RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780981|ref|YP_003065394.1| hypothetical protein
CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
           fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
           gallus} (A:119-491)
          Length = 373

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 43  ENEKKELSEHEKKVIESQENPKKQFSEHEKKETD-DPKSARKENIVMKKTFSQKSKKYTP 101
              K+ ++    ++   Q + ++Q  E ++ E D D K    +    +    Q  K+   
Sbjct: 3   VTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYD 62

Query: 102 YFDHYMTNGHLNLPQNNG 119
               ++T         + 
Sbjct: 63  NIQKHLTQASSIDMHPDF 80


>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification
          enzyme GIDA; rossmann fold, FAD-binding domain,
          dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium
          tepidum} (A:59-130,A:450-474)
          Length = 97

 Score = 27.8 bits (62), Expect = 0.53
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 16 AINPCGIEEDNLKSSPLPHIALESLSAENEKKELSEHEKKVIESQEN 62
          AI+  GI+   L  S  P  A+ S  A+ +K + S + ++++E +E+
Sbjct: 30 AIDATGIQFRMLNRSKGP--AMHSPRAQADKTQYSLYMRRIVEHEEH 74


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.308    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 856,617
Number of extensions: 33145
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 17
Length of query: 122
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 49
Effective length of database: 2,488,284
Effective search space: 121925916
Effective search space used: 121925916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.3 bits)