RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780981|ref|YP_003065394.1| hypothetical protein
CLIBASIA_04410 [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase), transmembrane region {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 69

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 67 FSEHEKKETDDPKSARKENIVMKKTFS 93
          FS++ + E  D   + KE+   +K FS
Sbjct: 10 FSDYRRPEVLDSTKSSKESSEARKGFS 36


>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase
           {Garden sage (Salvia officinalis) [TaxId: 38868]}
          Length = 328

 Score = 23.7 bits (51), Expect = 4.3
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 43  ENEKKELSEHEKKVIESQENPKKQFSEHEKKET--DDPKSARKENIVMKKTFSQKSK--- 97
                 L  + +       N     +    KE      +  RK  + + + +  ++K   
Sbjct: 105 TESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYH 164

Query: 98  -KYTPYFDHYMTNG 110
             YTP  D Y+   
Sbjct: 165 SGYTPSLDEYLNIA 178


>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli
           [TaxId: 562]}
          Length = 171

 Score = 23.7 bits (51), Expect = 4.4
 Identities = 4/10 (40%), Positives = 9/10 (90%)

Query: 5   FTILTMLFVS 14
           F +LT++++S
Sbjct: 162 FMVLTIVYLS 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,858
Number of extensions: 16943
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 15
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)