HHsearch alignment for GI: 254780982 and conserved domain: TIGR00949
>TIGR00949 2A76 Homoserine/Threonine efflux protein; InterPro: IPR004778 Proteins in this group include, A chemotactic transduction protein from Pseudomonas aeruginosa. The homoserine/homoserine lactone efflux protein from Escherichia coli. and a number of hypothetical proteins.; GO: 0016021 integral to membrane.
Probab=100.00 E-value=9.4e-44 Score=235.45 Aligned_cols=181 Identities=25% Similarity=0.418 Sum_probs=161.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
Q ss_conf 8994799999999831028899999999977669999999977755-3074788867689999999999997412-----
Q gi|254780982|r 19 APGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYS----- 92 (202)
Q Consensus 19 ~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~yL~~lg~~~~~~----- 92 (202)
T Consensus 1 ~PGp~~~~V~~tsl~~G~~~g~~~~lG~~~G~a~~~~l~~lGla~li~~~~~LF~~ik~~G~aYL~ylG~~~~Rg~s~~~ 80 (194)
T TIGR00949 1 SPGPNLFVVMQTSLSSGRRAGVLTILGIALGLAIWIVLALLGLAVLISKSVILFTVIKYLGGAYLIYLGVKMLRGKSMLK 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99875699999999862888878889999999999999999999999999999999999999999999999998788988
Q ss_pred C--CCC--CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4--677--871013567888999987898632742578878666765247733399999999999999999999999999
Q gi|254780982|r 93 P--FND--LPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC 168 (202)
Q Consensus 93 ~--~~~--~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (202)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~F~~GlL~nL~NPK~vlff~siF~~~~~~~~~~~~~~~~~~~~i~v~~i~w~~~~~~~f 160 (194)
T TIGR00949 81 KSKLQSPAAQVELAESTTVKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPITWQLIVLGLTIIVETILWFYVLSLIF 160 (194)
T ss_pred HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99863406556415530699999999987410068888877665541147502799999999999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 999999605138999999999---9999999999
Q gi|254780982|r 169 SKLRTLFSSSKFVKIQNRVSA---VVFLLLALRI 199 (202)
Q Consensus 169 ~~~~~~~~~~~~~~~in~i~g---~~li~~ai~l 199 (202)
T Consensus 161 ~~~~~~~~y~~~~~~~~~~~GGvG~~f~~fG~~L 194 (194)
T TIGR00949 161 SRPAVRRKYSKLQKLIDGITGGVGALFVGFGIRL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999756799999554317999999987519