HHsearch alignment for GI: 254780982 and conserved domain: TIGR02840
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205 This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=94.66 E-value=0.21 Score=24.68 Aligned_cols=167 Identities=20% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHH-HHHC-CHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC
Q ss_conf 9998310288-99999999977669-9999999777-5530-747888676899999999999----9741246778710
Q gi|254780982|r 29 NHALQHGWRP-NKILILGQETAVFI-IMLSITMGTK-FLSQ-LAYTMLIIKFLGVAWLIYSAW----SAWYSPFNDLPLG 100 (202)
Q Consensus 29 ~~~~~~G~~~-~~~~~~G~~~g~~~-~~~~~~~g~~-~l~~-~~~~~~~l~~~G~~yL~~lg~----~~~~~~~~~~~~~ 100 (202)
T Consensus 16 ~vG~~YGlrkIkip~~S~liIa~~S~l~~~~sM~~G~~L~~~lP~~--~~~~lG~~iL~~~G~~~~~~~~r~k~~~~~~~ 93 (215)
T TIGR02840 16 GVGIAYGLRKIKIPFLSLLIIAVISGLFIFISMLLGKLLAKFLPPK--VTEILGAIILIAIGIWIIYNAFRPKKERKKRS 93 (215)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999975246531669999999999999999999999999746767--88899999999999999999860578887630
Q ss_pred CCCCCCH---HHHHHHHHHHHHC-CC-------------HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 1356788---8999987898632-74-------------25788786667652477-333999999999999-9999999
Q gi|254780982|r 101 EIPLSSK---SKLFVKGFITDIT-NG-------------KAWAFFMAMVPAYLNMN-HYILPQSLILSLTMV-SVDAMVL 161 (202)
Q Consensus 101 ~~~~~~~---~~~f~~G~~v~l~-NP-------------ka~~f~~~~~~~fi~~~-~~~~~~~~~l~~~~~-~~~~~~~ 161 (202)
T Consensus 94 ~~~~~~~vWr~~~~~lg~~~~IL~~P~~AD~D~SG~I~~kE-AllLG~ALs-LDafGaGiGAsl~G~~p~~~~~~~~~~S 171 (215)
T TIGR02840 94 SEKDLSKVWRFELKSLGIVIQILRNPEVADLDKSGNITGKE-ALLLGIALS-LDAFGAGIGASLLGLNPLATSILVAVMS 171 (215)
T ss_pred CCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 01357610244650013556653377626777886200899-999999999-9999998999886117899999999999
Q ss_pred HHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999605138-----9999999999999999999
Q gi|254780982|r 162 MTFSLICSKLRTLFSSSKF-----VKIQNRVSAVVFLLLALRI 199 (202)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-----~~~in~i~g~~li~~ai~l 199 (202)
T Consensus 172 ~~fv~~G~~lG~~~~~~~~G~FT~~~~s~~l~G~~Li~lG~~~ 214 (215)
T TIGR02840 172 FIFVSLGLKLGKKVSKVSIGKFTIKKFSTFLPGILLILLGVFR 214 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988678874045313587788664899999999973