Query gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 202 No_of_seqs 115 out of 3554 Neff 8.3 Searched_HMMs 39220 Date Mon May 30 03:26:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK10520 rhtB homoserine/homos 100.0 0 0 290.8 26.3 202 1-202 1-203 (205) 2 PRK10958 leucine export protei 100.0 0 0 267.2 25.5 201 1-201 2-210 (213) 3 PRK10229 threonine efflux syst 100.0 0 0 258.1 25.4 199 3-202 2-205 (206) 4 COG1280 RhtB Putative threonin 100.0 0 0 257.0 26.0 202 1-202 1-206 (208) 5 pfam01810 LysE LysE type trans 100.0 0 0 257.3 22.0 188 15-202 2-191 (191) 6 PRK10323 neutral amino-acid ef 100.0 2.8E-45 0 243.5 25.0 193 1-200 1-194 (195) 7 TIGR00949 2A76 Homoserine/Thre 100.0 9.4E-44 0 235.4 19.6 181 19-199 1-194 (194) 8 COG1279 Lysine efflux permease 100.0 1.7E-32 4.3E-37 179.4 22.2 197 2-202 1-201 (202) 9 PRK09304 arginine exporter pro 100.0 9.9E-30 2.5E-34 165.7 20.5 181 17-201 2-186 (197) 10 TIGR00948 2a75 L-lysine export 100.0 9.4E-28 2.4E-32 155.8 17.2 174 17-192 2-213 (213) 11 pfam11139 DUF2910 Protein of u 99.3 8.1E-09 2.1E-13 61.6 21.8 190 11-202 3-209 (212) 12 PRK11111 hypothetical protein; 99.0 2.3E-07 5.7E-12 54.4 18.8 194 1-202 5-203 (214) 13 PRK10995 multiple drug resista 98.9 2.4E-06 6.2E-11 49.2 19.8 196 1-202 2-211 (222) 14 pfam01914 MarC MarC family int 98.6 1.5E-05 3.9E-10 45.3 16.6 190 5-202 3-197 (203) 15 PRK10739 putative dITP- and XT 98.5 2.6E-05 6.6E-10 44.1 17.0 188 3-202 1-189 (197) 16 pfam02683 DsbD Cytochrome C bi 98.5 3E-05 7.6E-10 43.8 18.4 160 37-201 39-206 (206) 17 COG2095 MarC Multiple antibiot 98.2 0.00019 4.7E-09 39.9 16.9 188 1-202 1-194 (203) 18 TIGR00427 TIGR00427 conserved 98.1 0.00038 9.6E-09 38.3 17.6 184 3-202 7-204 (206) 19 PRK00293 dipZ thiol:disulfide 97.8 0.0011 2.8E-08 36.0 18.5 190 4-201 172-385 (577) 20 PRK11469 hypothetical protein; 97.8 0.0013 3.3E-08 35.7 18.2 119 67-201 80-201 (206) 21 COG0785 CcdA Cytochrome c biog 97.7 0.0022 5.5E-08 34.6 19.3 193 6-200 13-220 (220) 22 pfam03741 TerC Integral membra 96.9 0.018 4.6E-07 30.0 18.9 165 20-202 10-183 (184) 23 COG1971 Predicted membrane pro 96.5 0.037 9.5E-07 28.4 19.7 162 24-201 18-185 (190) 24 pfam05758 Ycf1 Ycf1. The chlor 96.4 0.044 1.1E-06 28.0 10.5 122 9-137 6-136 (832) 25 TIGR02840 spore_YtaF putative 94.7 0.21 5.3E-06 24.7 13.2 167 29-199 16-214 (215) 26 pfam03596 Cad Cadmium resistan 94.0 0.019 4.9E-07 29.8 0.9 153 37-201 23-181 (192) 27 pfam01306 LacY_symp LacY proto 92.1 0.6 1.5E-05 22.4 13.7 20 112-131 210-229 (413) 28 COG4232 Thiol:disulfide interc 91.9 0.64 1.6E-05 22.3 14.9 187 6-200 170-380 (569) 29 PRK10019 nickel/cobalt efflux 91.0 0.79 2E-05 21.8 20.4 84 9-92 20-112 (278) 30 COG2119 Predicted membrane pro 89.4 1.1 2.8E-05 21.1 14.5 159 23-200 20-182 (190) 31 TIGR00897 2A0118 polyol permea 88.7 1.3 3.2E-05 20.8 5.8 79 103-185 211-303 (411) 32 pfam03209 PUCC PUCC protein. T 87.4 1.5 3.9E-05 20.4 16.5 122 7-132 94-218 (402) 33 pfam02417 Chromate_transp Chro 83.4 2.5 6.3E-05 19.3 11.6 88 2-92 39-131 (169) 34 COG1457 CodB Purine-cytosine p 75.0 4.8 0.00012 17.9 13.9 100 38-141 126-225 (442) 35 COG2836 Uncharacterized conser 74.4 4.9 0.00013 17.8 19.7 170 20-200 24-215 (232) 36 PRK09528 lacY galactoside perm 70.9 6.1 0.00015 17.4 14.2 19 113-131 212-230 (418) 37 COG2215 ABC-type uncharacteriz 69.3 6.6 0.00017 17.2 23.2 192 8-201 60-298 (303) 38 TIGR00802 nico transition meta 65.4 8 0.0002 16.8 5.9 70 26-95 23-114 (290) 39 COG0730 Predicted permeases [G 64.7 8.3 0.00021 16.7 18.8 37 165-201 216-252 (258) 40 pfam02674 Colicin_V Colicin V 62.0 9.4 0.00024 16.5 8.4 23 68-90 56-78 (145) 41 TIGR02357 thia_yuaJ probable p 60.6 10 0.00025 16.3 11.2 142 22-176 40-185 (187) 42 pfam10639 UPF0546 Uncharacteri 56.8 12 0.0003 16.0 3.4 76 111-199 30-110 (112) 43 TIGR00779 cad cadmium resistan 49.4 16 0.0004 15.3 4.1 162 26-201 12-183 (196) 44 COG2271 UhpC Sugar phosphate p 46.8 17 0.00044 15.1 4.0 16 115-130 245-260 (448) 45 PRK10473 multidrug efflux syst 41.7 21 0.00054 14.7 19.7 21 159-179 250-270 (392) 46 pfam01925 TauE Sulfite exporte 39.0 23 0.0006 14.5 19.4 31 165-199 206-236 (236) 47 COG1283 NptA Na+/phosphate sym 35.8 27 0.00068 14.2 10.7 27 36-62 82-108 (533) 48 PRK11102 bicyclomycin/multidru 35.4 27 0.00069 14.2 19.7 20 108-127 180-199 (377) 49 COG0861 TerC Membrane protein 33.6 29 0.00074 14.0 17.2 78 12-96 22-104 (254) 50 PRK10062 hypothetical protein; 29.5 34 0.00088 13.6 10.9 123 36-167 51-194 (303) 51 KOG2881 consensus 28.3 36 0.00092 13.5 8.1 83 6-93 65-151 (294) 52 pfam12263 DUF3611 Protein of u 25.3 42 0.0011 13.2 9.4 101 20-120 2-113 (183) 53 pfam05631 DUF791 Protein of un 24.4 43 0.0011 13.1 11.8 87 104-194 226-325 (354) 54 PRK10263 DNA translocase FtsK; 23.6 45 0.0011 13.1 10.8 105 7-130 33-142 (1355) 55 COG2059 ChrA Chromate transpor 22.7 47 0.0012 13.0 12.9 91 1-94 43-138 (195) 56 COG4956 Integral membrane prot 22.3 48 0.0012 12.9 8.3 55 38-92 76-132 (356) 57 COG5524 Bacteriorhodopsin [Gen 21.6 50 0.0013 12.9 7.8 24 153-176 230-253 (285) 58 TIGR00566 trpG_papA glutamine 21.6 8.6 0.00022 16.6 -2.5 22 3-24 45-66 (212) 59 COG4280 Predicted membrane pro 21.5 50 0.0013 12.8 12.9 85 1-94 1-86 (236) 60 TIGR01417 PTS_I_fam phosphoeno 21.4 50 0.0013 12.8 1.6 53 19-71 486-540 (576) 61 pfam06800 Sugar_transport Suga 21.1 51 0.0013 12.8 10.0 126 58-202 87-214 (268) 62 TIGR02849 spore_III_AD stage I 20.2 53 0.0014 12.7 3.4 32 66-97 38-69 (101) No 1 >PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional Probab=100.00 E-value=0 Score=290.78 Aligned_cols=202 Identities=27% Similarity=0.465 Sum_probs=191.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH Q ss_conf 9989999999999999948994799999999831028899999999977669999999977755-307478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~ 79 (202) ||+|.|+.|+.+++..+++|||++++++++++++|+|++++.++|+.+|+.++...+..|++.+ .++|..+.++|++|+ T Consensus 1 M~l~~~l~f~~~~~~~~itPGP~~~~vi~~~~~~G~r~~~~~~~G~~~G~~~~~~la~~Gl~~l~~~~p~~f~~lk~~Ga 80 (205) T PRK10520 1 MTLEWWLAYLLTSIILSLSPGSGAINTMSTSLSHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGA 80 (205) T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98999999999999996298688999999998858898999999999999999999999999999978999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999974124677871013567888999987898632742578878666765247733399999999999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM 159 (202) Q Consensus 80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~ 159 (202) .||+|+|++.||++.+..++++.+.++..+.|++|+++|++|||+++||.+++|||++++++...|.+.+..++...+.. T Consensus 81 ~YLi~Lg~~~~r~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~~Ff~a~~pqFi~~~~~~~~q~~~l~~~~~~~~~~ 160 (205) T PRK10520 81 AYLIWLGIQQWRAAGAIDLHTLASTQSRRKLFKRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDII 160 (205) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999998525667755456687666899999999925919999999998777189852499999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999996051389999999999999999999609 Q gi|254780982|r 160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) |+..|+..+++.+++++++|..|++||++|.+|+++|++++.| T Consensus 161 ~~~~~a~~~~~~~~~l~~~~~~~~~nrv~g~~li~~g~~La~~ 203 (205) T PRK10520 161 VMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASA 203 (205) T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999998594999999999999999999999860 No 2 >PRK10958 leucine export protein LeuE; Provisional Probab=100.00 E-value=0 Score=267.17 Aligned_cols=201 Identities=20% Similarity=0.284 Sum_probs=178.0 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH Q ss_conf 99899999999999999489947999999998310288999999999776699999999777553-07478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~ 79 (202) ||+++++.|+...+.++++|||++++++++++++|+|++++.++|+.+|+.+|...+.+|++.+. ++|+.+.++||+|+ T Consensus 2 ~~~t~l~~F~~~~~~~~itPGP~~~~v~~~sl~~G~~~~l~~~~G~~~G~~i~~~~a~~Gl~aLl~~~p~~f~vlk~~Ga 81 (213) T PRK10958 2 LGVTDLWTYLVGAIFIVLLPGPNSLYVLSTAAQRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGA 81 (213) T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87789999999999997088576999999998858898999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHH Q ss_conf 9999999997412467-----78710135678889999878986327425788786667652477333-99999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPFN-----DLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYI-LPQSLILSLTM 153 (202) Q Consensus 80 ~yL~~lg~~~~~~~~~-----~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~-~~~~~~l~~~~ 153 (202) +||+|+|+|++|++.+ +.+.++.+.++..+.|++|+++|++|||+++||++++|||++++.+. ..+...+..++ T Consensus 82 ~YLi~LGik~lrs~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~lFf~a~fpqFi~~~~~~~~~~~~~l~~~~ 161 (213) T PRK10958 82 AYLLYLGVKMLRAALRGWRARKAEAAASPAVDGGAPFRKALILSLTNPKAILFFVSFFVQFVDPNYAHPALSFLILATIL 161 (213) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 99999999999988740144554445567765567999999997249339999899766326888872899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999960-5138999999999999999999960 Q gi|254780982|r 154 VSVDAMVLMTFSLICSKLRTLFS-SSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) ..+.+.|+..+.+.+++.+++++ ++|..|++|+++|.+|+++|++++. T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~vfig~g~~LAT 210 (213) T PRK10958 162 QLVSFCYLSFLIFSGAFLAQYFRRRKKLAAGGNSLVGLLFVGFAAKLAT 210 (213) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999758799999999999999999999984 No 3 >PRK10229 threonine efflux system; Provisional Probab=100.00 E-value=0 Score=258.15 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=172.7 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH Q ss_conf 899999999999999489947999999998310288999999999776699999999777553-0747888676899999 Q gi|254780982|r 3 LETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAW 81 (202) Q Consensus 3 ~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~y 81 (202) ++.|++++..++..+++|||++++++++++++|+|+++..++|+.+|+.+|...+.+|++.+. ++|+.+.++|++|+.| T Consensus 2 l~~~l~~~l~~l~~~isPGPd~~lv~~~s~~~G~r~g~~~~~Gi~~G~~v~~~la~~Gl~~l~~~~~~~f~~ik~~Ga~Y 81 (206) T PRK10229 2 LMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLIIEKMAWLHTIIMVGGGLY 81 (206) T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999619866799999999885799899999999999999999999999999997599999999999999 Q ss_pred HHHHHHHHHHCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 999999974124677871----0135678889999878986327425788786667652477333999999999999999 Q gi|254780982|r 82 LIYSAWSAWYSPFNDLPL----GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD 157 (202) Q Consensus 82 L~~lg~~~~~~~~~~~~~----~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~ 157 (202) |+|+|+|++|+..++.+. .+.+.++..+.|++|+++|++|||+++||++++|||++++.+...+... .......+ T Consensus 82 L~yLG~~~lr~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~nllNPK~~lFf~a~f~qfi~~~~~~~~~~~~-~~~~~~~~ 160 (206) T PRK10229 82 LCWMGYQMLRGALKKEDVAAEEPQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAGARWGI-FALIIVET 160 (206) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHH T ss_conf 99999999986423567654443435552668999999998008299999999988654898646899999-99999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999996051389999999999999999999609 Q gi|254780982|r 158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) ..|+..++...++.+.+...+|..|++|+++|.+|+++|++++.| T Consensus 161 ~~w~~~~~~~~s~~~~~~~~~r~~~~i~~~~G~~~i~~gi~L~~s 205 (206) T PRK10229 161 LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIIS 205 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999996699999879889999999999999999999965 No 4 >COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism] Probab=100.00 E-value=0 Score=257.05 Aligned_cols=202 Identities=27% Similarity=0.496 Sum_probs=182.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH Q ss_conf 998999999999999994899479999999983102889999999997766999999997775-5307478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~~~~~~~l~~~G~ 79 (202) |+++.++.++.+++...++|||+|++++++++++|+|+++..++|+.+||.+++.++.+|++. +.++|..+.++|++|+ T Consensus 1 m~~~~~l~~~~~~~~~~~~PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~~~~~l~~~Gl~all~~~~~~f~~lk~~Ga 80 (208) T COG1280 1 MMLTNLLAFLLAALVLAATPGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGA 80 (208) T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 95899999999999996598916999999999857899999999999999999999999999999972999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHH Q ss_conf 9999999997412467787101356788--89999878986327425788786667652477333-99999999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPFNDLPLGEIPLSSK--SKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYI-LPQSLILSLTMVSV 156 (202) Q Consensus 80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~--~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~-~~~~~~l~~~~~~~ 156 (202) +||+|+|++++|++....++++.+.++. ++.|++|+++|++|||+++||++++|||++++.+. ..+.+.+..++... T Consensus 81 aYL~ylg~~~lra~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~ 160 (208) T COG1280 81 AYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILV 160 (208) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999998576645555444444541156999999998359199999999999981788842799999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999996051389999999999999999999609 Q gi|254780982|r 157 DAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) .+.+...++..+.+.+++.++++..|++|+++|.+++++|++++.+ T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~ 206 (208) T COG1280 161 GFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALS 206 (208) T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999998444599999999999999999999851 No 5 >pfam01810 LysE LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine. Probab=100.00 E-value=0 Score=257.28 Aligned_cols=188 Identities=18% Similarity=0.341 Sum_probs=173.0 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999489947999999998310288999999999776699999999777553-0747888676899999999999974124 Q gi|254780982|r 15 IITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAWLIYSAWSAWYSP 93 (202) Q Consensus 15 ~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~yL~~lg~~~~~~~ 93 (202) .++++|||+|++++++++++|+|++++.++|+.+||.+++.++.+|++.+. ++|+.+.++|++|+.||+|+|+++||++ T Consensus 2 ~l~~sPGP~~~~vi~~~~~~G~~~~~~~~~G~~~g~~~~~~l~~~Gl~~l~~~~~~~~~~l~~~G~~yL~ylg~~~~~~~ 81 (191) T pfam01810 2 SLALPPGPVNAFVLTQSIRRGFKHGLLVGLGAALGDAVLILLGLFGLAVLLGASPILFTVLKLGGGAYLLYLGILTLRAA 81 (191) T ss_pred EEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 36755767899999999985879999999999999999999999999999986599999999999999999999999824 Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 677871-0135678889999878986327425788786667652477333999999999999999999999999999999 Q gi|254780982|r 94 FNDLPL-GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLR 172 (202) Q Consensus 94 ~~~~~~-~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (202) .++.++ ++.++++..+.|++|+.+|++|||+++||++++|+|++++++...+.+.+..++...++.|+..++..+++.+ T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~G~~~~llNPK~~lf~~~~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 161 (191) T pfam01810 82 WSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSVGGSFIGKNQYGGAQRIIFAAGLILASLIWFSFLAFLASRLA 161 (191) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56543333566754889999999998009699999999999970776650789999999999999999999999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 996051389999999999999999999609 Q gi|254780982|r 173 TLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 173 ~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) ++++++|.+|++|+++|.+|+.+|++++-| T Consensus 162 ~~~~~~~~~~~i~~~~g~~li~~gi~l~~S 191 (191) T pfam01810 162 RRFKYKKLQRIINAIAGALLIGFGVYLLYS 191 (191) T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 997086799999999999999999999849 No 6 >PRK10323 neutral amino-acid efflux protein; Provisional Probab=100.00 E-value=2.8e-45 Score=243.51 Aligned_cols=193 Identities=22% Similarity=0.333 Sum_probs=174.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH Q ss_conf 998999999999999994899479999999983102889999999997766999999997775-5307478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~~~~~~~l~~~G~ 79 (202) ||.+.+.++..+.++.++||||+|++++++|.++|+|++++..+|+.+|...+.+.+.+|... +..+|..+.++|++|+ T Consensus 1 M~~~ll~a~~~f~~v~siTPGPnnil~~~~g~~~G~r~tlp~~~Gi~~G~~~~~~l~~~gl~~l~~~~P~~~~~lk~~Ga 80 (195) T PRK10323 1 MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGA 80 (195) T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98899999999999996588769999999998568999999998898999999999999999999988899999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999974124677871013567888999987898632742578878666765247733399999999999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM 159 (202) Q Consensus 80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~ 159 (202) +||+|+|||++++++++.+++ +++..|++|+..|+.|||+|++.++.+++|+.++++...+...+..++..+... T Consensus 81 ~YLlyLA~ki~~s~~~~~~~~-----~~~~~F~~g~~~Q~lNPKa~l~~~~~~s~F~~p~~~~~~~~~~~~~~~~~v~~~ 155 (195) T PRK10323 81 AYIVWLAWKIATSPTKEDGLQ-----PKPISFWASFALQFVNVKIILYGITALSTFVLPQTQALSWVVGVSVLLAMIGTF 155 (195) T ss_pred HHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999999971987655677-----687469999999973799999999999986287642499999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999960513899999999999999999996 Q gi|254780982|r 160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~ 200 (202) ....|+..|+.++|+++ |..|++|+++|.+++..++++. T Consensus 156 ~~~~Wa~~G~~l~r~l~--~~~R~~N~~ma~lLv~~av~i~ 194 (195) T PRK10323 156 GNVCWALAGHLFQRLFR--QYGRQLNIVLALLLVYCAVRIF 194 (195) T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999--8789999999999999999997 No 7 >TIGR00949 2A76 Homoserine/Threonine efflux protein; InterPro: IPR004778 Proteins in this group include, A chemotactic transduction protein from Pseudomonas aeruginosa. The homoserine/homoserine lactone efflux protein from Escherichia coli. and a number of hypothetical proteins.; GO: 0016021 integral to membrane. Probab=100.00 E-value=9.4e-44 Score=235.45 Aligned_cols=181 Identities=25% Similarity=0.418 Sum_probs=161.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHC----- Q ss_conf 8994799999999831028899999999977669999999977755-3074788867689999999999997412----- Q gi|254780982|r 19 APGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYS----- 92 (202) Q Consensus 19 ~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~yL~~lg~~~~~~----- 92 (202) +||||.+.++++++++|+|.|...++|+.+||.+|+.++.+|++.+ .+.+..+..+||.|++||+|+|++++|. T Consensus 1 ~PGp~~~~V~~tsl~~G~~~g~~~~lG~~~G~a~~~~l~~lGla~li~~~~~LF~~ik~~G~aYL~ylG~~~~Rg~s~~~ 80 (194) T TIGR00949 1 SPGPNLFVVMQTSLSSGRRAGVLTILGIALGLAIWIVLALLGLAVLISKSVILFTVIKYLGGAYLIYLGVKMLRGKSMLK 80 (194) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99875699999999862888878889999999999999999999999999999999999999999999999998788988 Q ss_pred C--CCC--CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4--677--871013567888999987898632742578878666765247733399999999999999999999999999 Q gi|254780982|r 93 P--FND--LPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC 168 (202) Q Consensus 93 ~--~~~--~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (202) + .++ .+.+.+++.+..+.|++|+++|++|||+++||.|+||||++++.+...+...+.++.+..+.+|+..++... T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~F~~GlL~nL~NPK~vlff~siF~~~~~~~~~~~~~~~~~~~~i~v~~i~w~~~~~~~f 160 (194) T TIGR00949 81 KSKLQSPAAQVELAESTTVKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPITWQLIVLGLTIIVETILWFYVLSLIF 160 (194) T ss_pred HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99863406556415530699999999987410068888877665541147502799999999999999999999999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHH Q ss_conf 999999605138999999999---9999999999 Q gi|254780982|r 169 SKLRTLFSSSKFVKIQNRVSA---VVFLLLALRI 199 (202) Q Consensus 169 ~~~~~~~~~~~~~~~in~i~g---~~li~~ai~l 199 (202) ++.+.+...+|.+|++|++.| .++++||+.+ T Consensus 161 ~~~~~~~~y~~~~~~~~~~~GGvG~~f~~fG~~L 194 (194) T TIGR00949 161 SRPAVRRKYSKLQKLIDGITGGVGALFVGFGIRL 194 (194) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999999756799999554317999999987519 No 8 >COG1279 Lysine efflux permease [General function prediction only] Probab=100.00 E-value=1.7e-32 Score=179.42 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=172.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHH Q ss_conf 989999999999999948994799999999831028899999999977669999999977755-3074788867689999 Q gi|254780982|r 2 TLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVA 80 (202) Q Consensus 2 ~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~ 80 (202) .++.++..+..++.+.++-||+|.++++||+++ ++.++.++-..+.|.+.+.+..+|++.+ .++|+...++++.|+. T Consensus 1 ~~~~~l~Gf~l~~~LI~pIGaQNaFVl~QGi~r--~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~ 78 (202) T COG1279 1 MMSAFLQGFLLGASLILPIGAQNAFVLNQGIRR--EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAA 78 (202) T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH T ss_conf 969999899999999985340359999988866--219999999999999999999988999998678999999999899 Q ss_pred HHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999741246778710---135678889999878986327425788786667652477333999999999999999 Q gi|254780982|r 81 WLIYSAWSAWYSPFNDLPLG---EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD 157 (202) Q Consensus 81 yL~~lg~~~~~~~~~~~~~~---~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~ 157 (202) ||+|+|+..||+++++.++. +.++.+..+.....+.++++||+++++.+.+.+..-.. ....+.+.+.++....+ T Consensus 79 FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~~l~~alavT~LNPhvyLDtvvliGs~~~~--~~~~~k~~F~~Ga~~aS 156 (202) T COG1279 79 FLLYYGLLALKSAPRGPSQLQVAEFTKLKLKKVLLFALAVTLLNPHVYLDTVVLIGSLAAQ--LSDEAKWFFALGAISAS 156 (202) T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH T ss_conf 9999999999850666000454676622279999999999980721334467765121654--06521278999899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999996051389999999999999999999609 Q gi|254780982|r 158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) +.|+...++.+..+++.+++||.+|++|+++|++|+..|+.+..+ T Consensus 157 ~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202) T COG1279 157 FLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202) T ss_pred HHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999976110581999999999999999999999516 No 9 >PRK09304 arginine exporter protein; Provisional Probab=99.97 E-value=9.9e-30 Score=165.66 Aligned_cols=181 Identities=15% Similarity=0.240 Sum_probs=155.3 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 948994799999999831028899999999977669999999977755-3074788867689999999999997412467 Q gi|254780982|r 17 TSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYSPFN 95 (202) Q Consensus 17 ~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~ 95 (202) +++.||+|.++++||++ +++.+++++-....|.+.+....+|++.+ .++|+...++++.|+.||+|+|++.+|++.+ T Consensus 2 IiaIGaQNaFVl~QGl~--r~hv~~v~~ic~lsD~~LI~~Gv~G~g~l~~~~p~l~~~~~~~G~~fL~~yG~~~~rsa~~ 79 (197) T PRK09304 2 ILPLGPQNAFVMNQGIR--RQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMS 79 (197) T ss_pred EEEECCHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 23234137999998870--1339999999999999999999999999999678999999999999999999999999836 Q ss_pred C---CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7---8710135678889999878986327425788786667652477333999999999999999999999999999999 Q gi|254780982|r 96 D---LPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLR 172 (202) Q Consensus 96 ~---~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (202) . .+..+.++.+..+...+.+.++++||++|++.+.+.+.+-.. ....+.+.+..+....++.|+...++.++.++ T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~~lavT~LNPHvyLDTv~llGs~s~~--~~~~~k~~F~~Ga~~AS~iWF~~Lg~ga~~ls 157 (197) T PRK09304 80 SNIELASAEVLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQ--LDVEPKRWFALGTISASFLWFFGLALLAAWLA 157 (197) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6633332233322289999999999971815888899997430034--78037899999999999999999999999989 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99605138999999999999999999960 Q gi|254780982|r 173 TLFSSSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 173 ~~~~~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) +++++||.+|++|.++|++|..+|++++- T Consensus 158 ~~~~~p~~wr~id~~i~~iM~~~A~~L~~ 186 (197) T PRK09304 158 PRLRTAKAQRIINLVVGCVMWFIALQLAR 186 (197) T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88688479999999999999999999999 No 10 >TIGR00948 2a75 L-lysine exporter; InterPro: IPR004777 L-lysine exporter, LysE is an exporter, which: (i) structurally represents a new type of translocator; (ii) demonstrates that exporters are also present for primary metabolites such as amino acids; and (iii) serves in one physiological function to link import with export activity .; GO: 0016021 integral to membrane. Probab=99.96 E-value=9.4e-28 Score=155.83 Aligned_cols=174 Identities=13% Similarity=0.182 Sum_probs=147.8 Q ss_pred HHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 94899479999999983102-88999999999776699999999777553-07478886768999999999999741246 Q gi|254780982|r 17 TSAPGPGNILTINHALQHGW-RPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAWLIYSAWSAWYSPF 94 (202) Q Consensus 17 ~~~PGP~~~~~i~~~~~~G~-~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~yL~~lg~~~~~~~~ 94 (202) .++-||+|.++++||+++.. ++.++.+.=..++|.+.+.+..+|.+.+. ++|....+++|.|++||+|+|+..+|++. T Consensus 2 i~~iG~QN~Fv~~qGi~R~~iWr~l~~~~lC~~cD~~Li~~Gv~G~~~l~~~~P~~~~~~~~GG~lFL~~yg~~a~~~a~ 81 (213) T TIGR00948 2 ILPIGAQNAFVLRQGIRREYIWRVLLIVALCLICDLVLIAAGVFGVSALLAASPILLAVLTWGGVLFLLWYGLLALKTAW 81 (213) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 35610346999872232325899999999999998999999999899999744689999999889999999999998730 Q ss_pred CC-----------CC--CCCC----------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC Q ss_conf 77-----------87--1013----------------------5678889999878986327425788786667652477 Q gi|254780982|r 95 ND-----------LP--LGEI----------------------PLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMN 139 (202) Q Consensus 95 ~~-----------~~--~~~~----------------------~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~ 139 (202) ++ .+ .+|. ++....+.....+.++++||++|++.+.+++.+-+ T Consensus 82 ~~kveaPqiiee~~~~~~~~~PlGGsavatdtrnrvrvevsvd~~~~~~k~~~~~l~vTlLNPhvYLDt~~liG~~~~-- 159 (213) T TIGR00948 82 RGKVEAPQIIEEPKALVPDEPPLGGSAVATDTRNRVRVEVSVDKKLGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGL-- 159 (213) T ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-- T ss_conf 144555213220033145677776401110132214677740663028999999999983367899999999976554-- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHH Q ss_conf 33399999999999999999999999999999-999605138999999999999 Q gi|254780982|r 140 HYILPQSLILSLTMVSVDAMVLMTFSLICSKL-RTLFSSSKFVKIQNRVSAVVF 192 (202) Q Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~in~i~g~~l 192 (202) +....+.+.|.+++..+++.|+...++.+.++ ++.++++|.+|++|.+.+++| T Consensus 160 q~~~~~r~~F~AGa~~AS~~WF~~La~~a~~lG~~~l~~~~~~~~~n~~va~vM 213 (213) T TIGR00948 160 QFSDEERWLFAAGAIAASLVWFASLAFGAARLGSPLLASPKVWRIINLVVAVVM 213 (213) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC T ss_conf 310024789999999999999999999999854400244779999989986359 No 11 >pfam11139 DUF2910 Protein of unknown function (DUF2910). Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known. Probab=99.28 E-value=8.1e-09 Score=61.56 Aligned_cols=190 Identities=10% Similarity=0.031 Sum_probs=136.9 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C----CHHHHHHHHHHHHHHHHHH Q ss_conf 9999999489947999999998310288999999999776699999999777553-0----7478886768999999999 Q gi|254780982|r 11 IFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-Q----LAYTMLIIKFLGVAWLIYS 85 (202) Q Consensus 11 ~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~----~~~~~~~l~~~G~~yL~~l 85 (202) ......+++|-+.-..+.=-.-.+..+++..+..|...+.........++...+. . .+.....+++.-+..++.. T Consensus 3 ~lal~~alsP~~i~~~vllL~~prp~~~~laFl~g~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~lvlGv~ll~~ 82 (212) T pfam11139 3 PLALGIALSPLRIGVAVLLLLRPRPVRRLLAFLAGWLLGYVAVGVVLLFVLHSLLLGLSHGPSRAVSWLQLVLGVALLLL 82 (212) T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 77898981939999999998489802666999999999999999999999743044345788616999999999999999 Q ss_pred HHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHH Q ss_conf 999741246778710-----135678889999878986327425788786667652477333999999---999999999 Q gi|254780982|r 86 AWSAWYSPFNDLPLG-----EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI---LSLTMVSVD 157 (202) Q Consensus 86 g~~~~~~~~~~~~~~-----~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~---l~~~~~~~~ 157 (202) |++.|+.++++.++. ..+..+..+.+.-|+...+.|||..++|++........+.+...|... +..+..... T Consensus 83 a~~~~~~~~~~~~~~p~w~~~~~~~~~~~a~~lg~~l~l~~~~~~~~~laA~~~I~~sg~~~~~~~~al~~f~via~~~~ 162 (212) T pfam11139 83 GARIWLRRPARQSEPPRWMRRLDRLPLGGALGLGAVLGLLSPKPLLLYLAALAAIGASGLSPGTQLAALVVFNVVAVLPL 162 (212) T ss_pred HHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99850358777767735776132158017999999999723761899999999998069968889999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999960513899999----99999999999999609 Q gi|254780982|r 158 AMVLMTFSLICSKLRTLFSSSKFVKIQN----RVSAVVFLLLALRIVAN 202 (202) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in----~i~g~~li~~ai~l~~s 202 (202) ..-...|....+|.++.+. |.++|++ .+.+.++..+|.+++.+ T Consensus 163 ~ipll~~l~a~~r~~~~L~--~l~~Wl~~~~~~i~~~i~~v~G~~l~~~ 209 (212) T pfam11139 163 LIPLLAYLVAPERTQAALA--RLRDWLRAHGRLIVAVLLGVVGLLLLAQ 209 (212) T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999975587999999--9999999764249999999999999982 No 12 >PRK11111 hypothetical protein; Provisional Probab=99.00 E-value=2.3e-07 Score=54.38 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=103.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 998999999999999994899479999-9999831028899999999977669999999977755307478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILT-INHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~-i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~ 79 (202) ||++.++..+...+...=|+|-.-.+. +.++.+...|+.+..-... .+..+......+|-..+.-..--...+++.|+ T Consensus 5 md~~~fi~~fi~Lf~iinPig~~pifl~lt~~~~~~~r~~ia~~a~~-~a~~il~~f~~~G~~iL~~fGIsl~afrIaGG 83 (214) T PRK11111 5 FDFSIYLKFFIGLFALVNPVGILPVFISMTSHQTAAERNKTNLTANF-SVAIILLISLFLGDFILNLFGISIDSFRIAGG 83 (214) T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 70999999999999997520069999999679999999999999999-99999999999889999996998999999949 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 999999999741246778710135678--8899--998789863274257887866676524773339999999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPFNDLPLGEIPLSS--KSKL--FVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVS 155 (202) Q Consensus 80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~--~~~~--f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~ 155 (202) ..|...|+++.+.+.++.+.++.++++ .... +.==..=-+.-|.++.-.+... .+.+...+.......... T Consensus 84 iiL~~ial~Ml~g~~~~~~~~~~e~~~~~~~~~iaivPLAiPllaGPGaIttvi~~~-----~~~~~~~~~~~~~~ai~~ 158 (214) T PRK11111 84 ILVVSIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWG-----TRYHSWSNLLGFSVAIAL 158 (214) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH T ss_conf 999999999864865665566221432112233210222454146858999999998-----645648899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999996051389999999999999999999609 Q gi|254780982|r 156 VDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) +....+.. -..++++.|++ +++-.+.++|++|.++...|+.+..| T Consensus 159 ~~~~~~~~-l~~a~~i~r~L-G~~g~~vi~RlmGliL~aiaVq~i~~ 203 (214) T PRK11111 159 FALCCWGL-FRMAPWLVRLL-GQTGINVITRIMGLLLMALGIEFIVT 203 (214) T ss_pred HHHHHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999-99899999998-88899999999999999999999999 No 13 >PRK10995 multiple drug resistance protein MarC; Provisional Probab=98.86 E-value=2.4e-06 Score=49.23 Aligned_cols=196 Identities=10% Similarity=0.129 Sum_probs=97.5 Q ss_pred CCHHHHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 99899999999999999489-9--47999999998310288999999999776699999999777553074788867689 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAP-G--PGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFL 77 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~P-G--P~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~ 77 (202) ||+-+++......++..+.| | |.+.. +.++.++..|+.+..-. ...+..+.......|-..+.-..--...+|+. T Consensus 2 ~~~~~~~~~~~v~Lf~IinPig~~PiFls-lt~~~~~~~r~~ia~~a-~~~a~~iLl~f~~~G~~iL~~fGIsl~afrIa 79 (222) T PRK10995 2 LDLFKAIGLGLVVLLPLANPLTTVALFLG-LSGNMTSEERNRQSLMA-SVYVFAIMMVAFYAGQLVMDTFGISIPGLRIA 79 (222) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 78999999999999999671306999999-84899999999999999-99999999999998999999969989999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC------CHH--HHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 9999999999974124677871013567------888--999987898-6327425788786667652477333999999 Q gi|254780982|r 78 GVAWLIYSAWSAWYSPFNDLPLGEIPLS------SKS--KLFVKGFIT-DITNGKAWAFFMAMVPAYLNMNHYILPQSLI 148 (202) Q Consensus 78 G~~yL~~lg~~~~~~~~~~~~~~~~~~~------~~~--~~f~~G~~v-~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~ 148 (202) |+..|...|+++...+.+..+.++.+.+ +.. ..+. =+.+ -+.-|.++.--+....+. +.. ........ T Consensus 80 GGiiL~~ia~~Ml~~~~~~~~~~~~~~~~~~~~~~~~~~iaiv-PLAiPllaGPGaIatvi~l~~~~-~~~-~~~~~~~~ 156 (222) T PRK10995 80 GGLIVAFIGFRMLFPQQKAEDSPEAKSKSEELADEPSANIAFV-PLAMPSTAGPGTIAMIISSASTI-REG-STFADWVL 156 (222) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCCCCCCHHHHHHHHHHHHC-CCC-CCHHHHHH T ss_conf 9999999999985355544334322345322111223430021-01142135846999999998623-543-20477999 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999--9999999996051389999999999999999999609 Q gi|254780982|r 149 LSLTMVSVDAMVLMTFS--LICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 149 l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) ...........+...|. ..+.++.|++ +++-.+.++|++|.++...|+.+..+ T Consensus 157 ~~~~~~~i~~~~~~~~~~l~~s~~i~r~L-G~~g~~vl~RimGllL~aiaVq~i~~ 211 (222) T PRK10995 157 MVAPPLIFLLVALILWGSLRSSGAIMRLL-GKGGIEAISRLMGFLLVCMGVQFIIN 211 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999769999998-88899999999999999999999999 No 14 >pfam01914 MarC MarC family integral membrane protein. Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters. Probab=98.58 E-value=1.5e-05 Score=45.29 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999999489947999-999998310288999999999776699999999777553074788867689999999 Q gi|254780982|r 5 TWIHFLIFTLIITSAPGPGNIL-TINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLI 83 (202) Q Consensus 5 ~~l~~~~~~~~~~~~PGP~~~~-~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~ 83 (202) .++..+...+...=|+|-.-.+ .+.++.+...|+.... -....+..+.......|-..+.-..--...+++.|+..|. T Consensus 3 ~~l~~f~~Lf~iinPig~~pifl~lt~~~~~~~r~~ia~-~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~ 81 (203) T pfam01914 3 FIFSAFLSLFAIINPIGNVPVFISLTENYPAEERKRIIL-RASIIAFLILLLFLVFGKLILKLFGISIDAFRIAGGILLF 81 (203) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 899999999999846347999999858999999999999-9999999999999999999999968879999998289999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999741246778710135678----88999987898632742578878666765247733399999999999999999 Q gi|254780982|r 84 YSAWSAWYSPFNDLPLGEIPLSS----KSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM 159 (202) Q Consensus 84 ~lg~~~~~~~~~~~~~~~~~~~~----~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~ 159 (202) ..|+++.+.+.++.+.++.+..+ ....+.==..=-+.-|-++.-.+.... +.+...+..........+... T Consensus 82 ~ial~ml~~~~~~~~~~~~~~~~~~~~~~~aivPLaiPllaGPG~Ittvi~l~~-----~~~~~~~~~~~~~ai~~~~~~ 156 (203) T pfam01914 82 LIAIDMLFGKQSKEKTSKSEKEESEDIDEIAVVPLAIPLIAGPGAITTTMVLMA-----EHGTIGLKIAVILAILLAWLI 156 (203) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHH T ss_conf 999999658655333464433332222344100001310368389999999986-----558788999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999996051389999999999999999999609 Q gi|254780982|r 160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) . ...-..++++.|++ +++-.+.++|++|.++...|+.+..| T Consensus 157 ~-~l~l~~s~~i~k~l-G~~g~~ii~Rl~GliL~aiavq~i~~ 197 (203) T pfam01914 157 T-FLILLSSSFIIRLL-GRTGINALTRIMGLLLAAIAVQMIVT 197 (203) T ss_pred H-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9-99999889999998-88999999999999999999999999 No 15 >PRK10739 putative dITP- and XTP- hydrolase; Provisional Probab=98.54 E-value=2.6e-05 Score=44.13 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=94.8 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 89999999999999948994799999-99983102889999999997766999999997775530747888676899999 Q gi|254780982|r 3 LETWIHFLIFTLIITSAPGPGNILTI-NHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAW 81 (202) Q Consensus 3 ~~~~l~~~~~~~~~~~~PGP~~~~~i-~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~y 81 (202) +++++......+...=|+|-.-.++- .++.+...|+-...- ....+..+......+|-..+.-..--...+|+.|+.. T Consensus 1 m~~li~~fi~LF~iinPig~~PiFlslt~~~~~~~r~~ia~~-a~~~a~~il~~F~~~G~~il~~fgIsi~afrIaGGil 79 (197) T PRK10739 1 MNEIISATVLLILIMDPLGNLPIFMSVLKHLEPKRRRAIMIR-ELLIALLVMLVFLFAGEKILAFLNLRAETVSISGGII 79 (197) T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 967999999999997621069999998479999999999999-9999999999999989999999499889999987899 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999997412467787101356788899998789863274257887866676524773339999999999999999999 Q gi|254780982|r 82 LIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVL 161 (202) Q Consensus 82 L~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~ 161 (202) |...|+++.....++.+.+..+.++. .+.-=..=-+.-|-++.-.+... .+.... ...............+ T Consensus 80 L~~ia~~Ml~~~~~~~~~~~~~~~~~--~ivPLAiPllaGPGaIttvi~l~-----~~~~~~--~~~~~~ai~~~~~~~~ 150 (197) T PRK10739 80 LFLIAIKMIFPSAEGNSSGLPAGEEP--FLVPLAIPLVAGPSILATLMLLS-----HQYPNQ--MGHLVIALLIAWGGTF 150 (197) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCC--EEEEECCCCCCCCHHHHHHHHHH-----HHCCHH--HHHHHHHHHHHHHHHH T ss_conf 99999998626665665555655542--02300153225868999999998-----304224--7999999999999999 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999996051389999999999999999999609 Q gi|254780982|r 162 MTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) .. -..++++.|++ +++-.+.+.|++|.++...|+.+..| T Consensus 151 ~~-l~~s~~i~r~l-G~~G~~ii~RlmGliLaaIavq~i~~ 189 (197) T PRK10739 151 VI-LLQSSLFLRLL-GEKGVNALERLMGLILVMMSTQMFLD 189 (197) T ss_pred HH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99-99989999997-98999999999999999999999999 No 16 >pfam02683 DsbD Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Probab=98.52 E-value=3e-05 Score=43.82 Aligned_cols=160 Identities=10% Similarity=0.064 Sum_probs=85.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCHHH Q ss_conf 88999999999776699999999777553074788867689999999999997412-------46778710135678889 Q gi|254780982|r 37 RPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYS-------PFNDLPLGEIPLSSKSK 109 (202) Q Consensus 37 ~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~-------~~~~~~~~~~~~~~~~~ 109 (202) ++++..++|..+........+......+. .....+.+..+..++.++..+... ..+......+++++... T Consensus 39 ~~~~~f~lG~~~~f~~lG~~~~~~g~~~~---~~~~~~~~~~g~~~il~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (206) T pfam02683 39 LKALLFVLGLSIVFLSLGYGAAFLGGLFR---DYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRLGHKKLKVEGPMLG 115 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 99999999999999999999999999999---989999999999999999999999857776556666651266785067 Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 99987898632-74257887866676524773339999999999999999999999999999999960513899999999 Q gi|254780982|r 110 LFVKGFITDIT-NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVS 188 (202) Q Consensus 110 ~f~~G~~v~l~-NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~ 188 (202) .|..|+...+. -|=+-.+..++.+.-... ++.......+..-..... .-+...+...++.++..+.+|+.+++++++ T Consensus 116 ~Fl~G~~~~l~~~PC~~P~l~~iL~~aa~~-g~~~~g~~~l~~y~lG~~-lP~ll~~~~~~~l~~~~~~~~~~~~v~~v~ 193 (206) T pfam02683 116 AFLLGMLFALGWTPCIGPILASVLALAASS-GSLLLAALLLVVYVLGLG-IPFLLASLFAGSLLFLRWLRKNSRWIRIAS 193 (206) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999873545357999999999848-968999999999999999-999999999999987577789999999999 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999999960 Q gi|254780982|r 189 AVVFLLLALRIVA 201 (202) Q Consensus 189 g~~li~~ai~l~~ 201 (202) |.+++..|+|++. T Consensus 194 G~~li~~gi~~l~ 206 (206) T pfam02683 194 GVLLILIGILLLL 206 (206) T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999979 No 17 >COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion] Probab=98.21 E-value=0.00019 Score=39.87 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=92.6 Q ss_pred CCHHHHHH-HHHHHHHHHHCCCHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 99899999-9999999994899479-9999999831028-8999999999776699999999777553074788867689 Q gi|254780982|r 1 MTLETWIH-FLIFTLIITSAPGPGN-ILTINHALQHGWR-PNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFL 77 (202) Q Consensus 1 M~~~~~l~-~~~~~~~~~~~PGP~~-~~~i~~~~~~G~~-~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~ 77 (202) |++...+. .+...+...=++|-.- +..+..+.+...| +-... ....+-.+......+|-..+.-...-....+.. T Consensus 1 m~~~~~~~~~~i~Lf~i~dP~G~ipvf~slt~~~~~~~r~~v~~r--a~i~a~~ill~f~~~G~~il~~fgIsi~a~rIA 78 (203) T COG2095 1 MDLLMFLLSAFILLFAIIDPIGNLPVFISLTKGLSPEERNRVALR--ASIIALLILLVFLLLGEGILRFFGISIDAFRIA 78 (203) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 961899999999999985778503879999768999999999999--999999999999999999999968866777874 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999741246778710-13567888999987898632742578878666765247733399999999999999 Q gi|254780982|r 78 GVAWLIYSAWSAWYSPFNDLPLG-EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSV 156 (202) Q Consensus 78 G~~yL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~ 156 (202) |+..|.+.|+++...+.++.+.+ |..+++ ...+.-=..=-+.-|.++.-......+ . + .+......+.. T Consensus 79 GGilLf~ia~~ml~~~~~~~~~~~e~~~~~-~iaivPLA~PliaGPg~Ist~i~~~~~----~-~--~~~~~~~~~i~-- 148 (203) T COG2095 79 GGILLFLIALRMLFGPTSRPKKKREEGQED-SIAIVPLAIPLIAGPGTIATVIVLSSQ----Y-G--NSKLAVVLAIL-- 148 (203) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEECCCCCCCCCCHHHHHHHHHHHC----C-C--CCCHHHHHHHH-- T ss_conf 049899999999568767777786657657-802544657553475999999999813----5-7--44099999999-- Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999--999999996051389999999999999999999609 Q gi|254780982|r 157 DAMVLMTFSL--ICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 157 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) ..|..+|.. .+.++.|++ +++-.+.+.|++|+++..+|+.+..+ T Consensus 149 -~~~~~~~~~l~~s~~i~r~l-G~~G~~vl~RimGllL~al~vq~i~~ 194 (203) T COG2095 149 -LASLLTYLILLSSSRIMRLL-GKTGLNALTRIMGLLLAALGVQMILD 194 (203) T ss_pred -HHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf -99999999999889999997-78889999999999999999999999 No 18 >TIGR00427 TIGR00427 conserved hypothetical protein TIGR00427; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. . Probab=98.07 E-value=0.00038 Score=38.34 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=104.2 Q ss_pred HHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 89999999999999948994--7999999998310288999999999776699999999777553074788867689999 Q gi|254780982|r 3 LETWIHFLIFTLIITSAPGP--GNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVA 80 (202) Q Consensus 3 ~~~~l~~~~~~~~~~~~PGP--~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~ 80 (202) ++-|+..+...|...=|||- .+....++=-+.-|.+--+- .......+......+|-..+.-+.-..+.+|++|+. T Consensus 7 l~f~~~~F~sLF~~~nP~G~~PiFi~LTe~y~~~~R~~i~kk--A~I~~~~IL~~f~~fG~~Il~~FGIsIdafriAGGI 84 (206) T TIGR00427 7 LSFYIKVFISLFAIINPIGNVPIFISLTESYTAEEREKIAKK--AVISAFVILLIFLLFGDLILKYFGISIDAFRIAGGI 84 (206) T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 015766877898885475502322114888877899999899--999999999999987457886608727898998899 Q ss_pred HHHHHHHHHHHCCCCCCCCCC-CCC-CC-HHH---------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 999999997412467787101-356-78-889---------999878986327425788786667652477333999999 Q gi|254780982|r 81 WLIYSAWSAWYSPFNDLPLGE-IPL-SS-KSK---------LFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI 148 (202) Q Consensus 81 yL~~lg~~~~~~~~~~~~~~~-~~~-~~-~~~---------~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~ 148 (202) .+.-.++.+.+.+..+.+..+ +|. ++ ... -..+| |-++.-.+...++ .++... ... T Consensus 85 Llf~Ia~dml~gK~~~~~~~k~~E~~e~~~~dsI~v~PLA~PL~aG-------PGaIt~~mvl~~~----~~~I~~-k~~ 152 (206) T TIGR00427 85 LLFLIALDMLSGKESEKKKHKHDEKEESKEIDSIAVVPLALPLIAG-------PGAITATMVLIAK----ASDIGE-KFL 152 (206) T ss_pred HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCC-------CCHHHHHHHHHHH----CCHHHH-HHH T ss_conf 9999999998402550452041347864465410222124542036-------5169999999970----330899-999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999996051389999999999999999999609 Q gi|254780982|r 149 LSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) ..+.......+++..+.....-.++. ++.-.+.+-|++|++|...|+.++.+ T Consensus 153 V~l~Ial~~~~~~l~~~~~~~i~~~l--g~~Gin~~tRimGL~L~AiaV~~I~~ 204 (206) T TIGR00427 153 VVLAIALVLLITFLLFLYAAFIIRRL--GRTGINVITRIMGLLLAAIAVEFIVT 204 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999998768999886--23018899999999999988887515 No 19 >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional Probab=97.83 E-value=0.0011 Score=36.03 Aligned_cols=190 Identities=16% Similarity=0.174 Sum_probs=96.9 Q ss_pred HHHHHHHHHHHHHHHCCC-----HHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHCCHHH Q ss_conf 999999999999994899-----47999999-9----9831028899999999977669999-999977--755307478 Q gi|254780982|r 4 ETWIHFLIFTLIITSAPG-----PGNILTIN-H----ALQHGWRPNKILILGQETAVFIIML-SITMGT--KFLSQLAYT 70 (202) Q Consensus 4 ~~~l~~~~~~~~~~~~PG-----P~~~~~i~-~----~~~~G~~~~~~~~~G~~~g~~~~~~-~~~~g~--~~l~~~~~~ 70 (202) -.++.++..++.+..||- |....++. + +.++|+.-++..++|+++.+.+... ++..|. +...++|++ T Consensus 172 ~~ll~ff~~GllL~lTPCV~PmiPIlssii~g~~~~~s~~r~~~lsl~Yvlgma~ty~~lG~~~~~~G~~~q~~lQ~P~v 251 (577) T PRK00293 172 WSLLWFFLLGIGLAFTPCVLPMYPILSGIVLGGGQRLSTARAFLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV 251 (577) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH T ss_conf 99999999989985387655658999998606678863146899999999999999999999999987789998734299 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----CCCC---CCC--CCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC Q ss_conf 886768999999999999741-----2467---787--101356788899998789863-27425788786667652477 Q gi|254780982|r 71 MLIIKFLGVAWLIYSAWSAWY-----SPFN---DLP--LGEIPLSSKSKLFVKGFITDI-TNGKAWAFFMAMVPAYLNMN 139 (202) Q Consensus 71 ~~~l~~~G~~yL~~lg~~~~~-----~~~~---~~~--~~~~~~~~~~~~f~~G~~v~l-~NPka~~f~~~~~~~fi~~~ 139 (202) ...+ +..+..+|..++- -+.. ..+ ..+.+..+....|..|++..+ .-|=.-....+..- ++... T Consensus 252 l~~~----~~lfv~laLSmfG~fel~lP~~~~~~l~~~s~~~~gG~~~G~f~mG~lsaLv~sPC~~~PL~gaLl-yia~t 326 (577) T PRK00293 252 LIGL----AILFVLLALSMFGLFTLQLPSSLQTRLNLMSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALL-YIAQS 326 (577) T ss_pred HHHH----HHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHCC T ss_conf 9999----999999999986347742776777787765413578971529999999998854343287899999-99703 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33399999999999999999999999999999999605138999999999999999999960 Q gi|254780982|r 140 HYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) ++.......+.......... +...+....++ .-+...+...+.++.|.+|+..|+|++. T Consensus 327 g~~~~G~~~Lf~lglGMglP-lllig~~~~~l--LPK~G~WM~~vK~vfGfllLa~AiwlL~ 385 (577) T PRK00293 327 GDLLLGGLTLYLLALGMGLP-LILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVFLLE 385 (577) T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75677899999999888769-99998506641--9998618999999999999999999999 No 20 >PRK11469 hypothetical protein; Provisional Probab=97.79 E-value=0.0013 Score=35.68 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=62.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH Q ss_conf 7478886768999999999999741246778710135---6788899998789863274257887866676524773339 Q gi|254780982|r 67 LAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIP---LSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYIL 143 (202) Q Consensus 67 ~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~---~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~ 143 (202) .+.+..+=+|++...|.++|.+|++...++.++++.+ ..+.+..+..+..++ ++-+++-=++.-.+.+.. T Consensus 80 ~~~i~~~dhWiAf~LL~~IG~~MI~e~~~~~~~~~~~~~~~~~~~~Ll~lAiATS-------IDAlAVGvsla~l~~~i~ 152 (206) T PRK11469 80 SRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATS-------LDAMAVGVGLAFLQVNII 152 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHH T ss_conf 9999876899999999999999999986566632113444676999999999986-------999999999998463099 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999605138999999999999999999960 Q gi|254780982|r 144 PQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) .....+..+ ++ ..+..+-.+.+++ .++..|+-+.+.|+++++.|++++. T Consensus 153 ~~~lvIG~v----T~----~~s~~Gv~lG~~~-G~~~g~~Aei~GG~VLI~IGlkiL~ 201 (206) T PRK11469 153 ATALAIGCA----TL----IMSTLGMMVGRFI-GSIIGKKAEILGGLVLIGIGVQILW 201 (206) T ss_pred HHHHHHHHH----HH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999----99----9999999999998-8987019999999999999999999 No 21 >COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones] Probab=97.66 E-value=0.0022 Score=34.55 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=101.3 Q ss_pred HHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH Q ss_conf 9999999999994899-----479999999983102889999999997766999999997775530-7478886768999 Q gi|254780982|r 6 WIHFLIFTLIITSAPG-----PGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQ-LAYTMLIIKFLGV 79 (202) Q Consensus 6 ~l~~~~~~~~~~~~PG-----P~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~-~~~~~~~l~~~G~ 79 (202) ....+..+..-..+|= |..+..+...-...+++......+-..|..........+...+.+ .+.....++++++ T Consensus 13 ~~~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~g 92 (220) T COG0785 13 ILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAG 92 (220) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998999818266888899999996100105688999999999999999999999999999999998999999999 Q ss_pred HHHHHHHHHHHHCCC---CCCC---CCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 999999999741246---7787---1013567888999987898632-74257887866676524773339999999999 Q gi|254780982|r 80 AWLIYSAWSAWYSPF---NDLP---LGEIPLSSKSKLFVKGFITDIT-NGKAWAFFMAMVPAYLNMNHYILPQSLILSLT 152 (202) Q Consensus 80 ~yL~~lg~~~~~~~~---~~~~---~~~~~~~~~~~~f~~G~~v~l~-NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~ 152 (202) ..++-+|+....... ...+ +.+.+..+....|.-|+...+. -|=.-..+.++...-.. .++ ..+...+... T Consensus 93 i~li~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~-~~~-~~~g~~ll~~ 170 (220) T COG0785 93 ILLILLGLLFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAAS-TGS-VVLGALLLAA 170 (220) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHH T ss_conf 99999999999986245665444535124676306788999999999855446799999999974-884-6899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999--960513899999999999999999996 Q gi|254780982|r 153 MVSVDAMVLMTFSLICSKLRT--LFSSSKFVKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~in~i~g~~li~~ai~l~ 200 (202) ....-..-+...+...++..+ ...-+|+.+.++++.|..++.+|++++ T Consensus 171 Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~ll 220 (220) T COG0785 171 YALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLLL 220 (220) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99998999999999999999988899999763999999999999999739 No 22 >pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Probab=96.89 E-value=0.018 Score=29.99 Aligned_cols=165 Identities=17% Similarity=0.263 Sum_probs=78.2 Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 994799999999831--028899999999977669999999977755307478886768999999999999741246778 Q gi|254780982|r 20 PGPGNILTINHALQH--GWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDL 97 (202) Q Consensus 20 PGP~~~~~i~~~~~~--G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~ 97 (202) -|-+|+.++....++ ...+--..-.|...+...=......+...+...| .++++|+.||+|.+++.++...++. T Consensus 10 Ls~DN~ivial~~~~lP~~~r~~al~~Gi~~A~v~R~i~i~~~~~ll~~~~----~l~~igg~~Li~~~~k~~~~~~~~~ 85 (184) T pfam03741 10 LSVDNAFVIALIFRKLPPEQQKKALFWGIIGALVLRIILILLGSALLELFD----WILLIGGAFLLYTAIKLLRENEEDD 85 (184) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 885499999999804899999999999999999999999999999999707----9999999999999999987323443 Q ss_pred CCCCC------CCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 71013------5678889999878-9863274257887866676524773339999999999999999999999999999 Q gi|254780982|r 98 PLGEI------PLSSKSKLFVKGF-ITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSK 170 (202) Q Consensus 98 ~~~~~------~~~~~~~~f~~G~-~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (202) +++.. +.++..+.|.... .+-+.+ ++|-+-=.+.-+...+ +.+.+ .+.. .......-+.... T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~av~~I~~~D---lvFSlDSV~aa~g~t~----~~~ii-~~~~---i~si~~m~~~~~~ 154 (184) T pfam03741 86 EENKIVRELKKVLPVTSSSLWLAVIQIELAD---LVFSLDSVPAAVGITD----DPFIV-ITGN---IFAILGLRFLAFL 154 (184) T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----CHHHH-HHHH---HHHHHHHHHHHHH T ss_conf 2002345443015654037999999999999---9987628999999813----55999-9999---9999999999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99996051389999999999999999999609 Q gi|254780982|r 171 LRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 171 ~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) +.+... ..+.++......+...|+.|... T Consensus 155 ~~~~i~---~~~~l~~~~~~~L~~ig~kLi~e 183 (184) T pfam03741 155 LAKLIE---RFPYLKYLAAAILGFIGVKLLLE 183 (184) T ss_pred HHHHHH---HCHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999---87699999999999999999608 No 23 >COG1971 Predicted membrane protein [Function unknown] Probab=96.48 E-value=0.037 Score=28.41 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=81.2 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 999999998310288-9999999997766999999997775530747888676899999999999974124677871013 Q gi|254780982|r 24 NILTINHALQHGWRP-NKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEI 102 (202) Q Consensus 24 ~~~~i~~~~~~G~~~-~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~ 102 (202) +..-+.+|++..+.+ --....+.+.|..-.+.-...-..-..-++....+=+|+|...|.++|.+++++..++++++.. T Consensus 18 Fav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~~~~~~~ 97 (190) T COG1971 18 FAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKNEEDEFV 97 (190) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH T ss_conf 99999831564251089999999999999999999999999999999999999999999999999999998035431021 Q ss_pred CC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 56--78---88999987898632742578878666765247733399999999999999999999999999999999605 Q gi|254780982|r 103 PL--SS---KSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSS 177 (202) Q Consensus 103 ~~--~~---~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202) ++ ++ .......|+.+++-|- +.-.-.+. . +.+.......+.. .+......=...++++.+++ T Consensus 98 ~~~~~~~~~~~~~~~laiatSidal-~vG~~~a~----l--gv~i~~~av~iG~----~T~il~~~G~~IG~~~g~~~-- 164 (190) T COG1971 98 DPAEKHDLNFKELILLAIATSIDAL-AVGVGLAF----L--GVNILLAAVAIGL----ITLILSALGAIIGRKLGKFL-- 164 (190) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH----H--CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-- T ss_conf 3520010349999999999999888-87533997----4--2369999999999----99999999999999999887-- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 138999999999999999999960 Q gi|254780982|r 178 SKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 178 ~~~~~~in~i~g~~li~~ai~l~~ 201 (202) -+.-+.+.|.+++++|.+++. T Consensus 165 ---g~~ae~lgGiiLI~~G~~iL~ 185 (190) T COG1971 165 ---GKYAEILGGIILIGIGVKILL 185 (190) T ss_pred ---HHHHHHHHHHHHHHHHHHHHH T ss_conf ---239999988999999999999 No 24 >pfam05758 Ycf1 Ycf1. The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Probab=96.36 E-value=0.044 Score=28.03 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=74.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999994899479999999983-1028899999999977669999999977-7553074788867689999999999 Q gi|254780982|r 9 FLIFTLIITSAPGPGNILTINHALQ-HGWRPNKILILGQETAVFIIMLSITMGT-KFLSQLAYTMLIIKFLGVAWLIYSA 86 (202) Q Consensus 9 ~~~~~~~~~~~PGP~~~~~i~~~~~-~G~~~~~~~~~G~~~g~~~~~~~~~~g~-~~l~~~~~~~~~l~~~G~~yL~~lg 86 (202) ++-.++.-+.+.||+-+++++.-+- .|--..+....|-.+|-.+..+.++..= -..+--|....++- .-||++-= T Consensus 6 GLYYGFLTTfsIGPSylfllRa~vmeegtek~vsAttGfItGQL~mfiSIYYaPLhlaL~rPHtITvL~---lPYllf~f 82 (832) T pfam05758 6 GLYYGFLTTFSIGPSYLFLLRARVLEEGTEKKVSATTGFITGQLIMFISIYYAPLYLALGRPHTITVLA---LPYLLFHF 82 (832) T ss_pred EHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHH T ss_conf 728779887265458999999998625776626887307888999999998899999974553308999---99999999 Q ss_pred HHHHHCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC Q ss_conf 99741246778-------7101356788899998789863274257887866676524 Q gi|254780982|r 87 WSAWYSPFNDL-------PLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLN 137 (202) Q Consensus 87 ~~~~~~~~~~~-------~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~ 137 (202) + |....+-. +.+.-...+-...|..+++.|++||- +.=.++++-.++ T Consensus 83 f--~~n~k~f~~~~s~~~~~nSmrn~~iq~vFLnnlIfQL~N~~--iLPss~LaRLvn 136 (832) T pfam05758 83 F--WNNHKDFFDYGSSLTPRNSMRNLSIQCVFLNNLIFQLLNPF--ILPSSVLARLVN 136 (832) T ss_pred H--HCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCHH--HCCCHHHHHHHH T ss_conf 7--40665556654455642000124589999998999970413--157689998776 No 25 >TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205 This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus.. Probab=94.66 E-value=0.21 Score=24.68 Aligned_cols=167 Identities=20% Similarity=0.162 Sum_probs=74.8 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHH-HHHC-CHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC Q ss_conf 9998310288-99999999977669-9999999777-5530-747888676899999999999----9741246778710 Q gi|254780982|r 29 NHALQHGWRP-NKILILGQETAVFI-IMLSITMGTK-FLSQ-LAYTMLIIKFLGVAWLIYSAW----SAWYSPFNDLPLG 100 (202) Q Consensus 29 ~~~~~~G~~~-~~~~~~G~~~g~~~-~~~~~~~g~~-~l~~-~~~~~~~l~~~G~~yL~~lg~----~~~~~~~~~~~~~ 100 (202) .-|+.||-|+ -+++..-..++-.- ....+....+ .+.+ .|.. +-+.+|+..|+-+|. +.+|.++...+.+ T Consensus 16 ~vG~~YGlrkIkip~~S~liIa~~S~l~~~~sM~~G~~L~~~lP~~--~~~~lG~~iL~~~G~~~~~~~~r~k~~~~~~~ 93 (215) T TIGR02840 16 GVGIAYGLRKIKIPFLSLLIIAVISGLFIFISMLLGKLLAKFLPPK--VTEILGAIILIAIGIWIIYNAFRPKKERKKRS 93 (215) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999975246531669999999999999999999999999746767--88899999999999999999860578887630 Q ss_pred CCCCCCH---HHHHHHHHHHHHC-CC-------------HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HHHHHHH Q ss_conf 1356788---8999987898632-74-------------25788786667652477-333999999999999-9999999 Q gi|254780982|r 101 EIPLSSK---SKLFVKGFITDIT-NG-------------KAWAFFMAMVPAYLNMN-HYILPQSLILSLTMV-SVDAMVL 161 (202) Q Consensus 101 ~~~~~~~---~~~f~~G~~v~l~-NP-------------ka~~f~~~~~~~fi~~~-~~~~~~~~~l~~~~~-~~~~~~~ 161 (202) ++++.++ .+.=.=|.+++++ || |. .+++++.=. .|.- ........-+-.... ....+.- T Consensus 94 ~~~~~~~vWr~~~~~lg~~~~IL~~P~~AD~D~SG~I~~kE-AllLG~ALs-LDafGaGiGAsl~G~~p~~~~~~~~~~S 171 (215) T TIGR02840 94 SEKDLSKVWRFELKSLGIVIQILRNPEVADLDKSGNITGKE-ALLLGIALS-LDAFGAGIGASLLGLNPLATSILVAVMS 171 (215) T ss_pred CCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 01357610244650013556653377626777886200899-999999999-9999998999886117899999999999 Q ss_pred HHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999605138-----9999999999999999999 Q gi|254780982|r 162 MTFSLICSKLRTLFSSSKF-----VKIQNRVSAVVFLLLALRI 199 (202) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-----~~~in~i~g~~li~~ai~l 199 (202) ......|.++.++..+.++ .|.=+.+.|++++..|++- T Consensus 172 ~~fv~~G~~lG~~~~~~~~G~FT~~~~s~~l~G~~Li~lG~~~ 214 (215) T TIGR02840 172 FIFVSLGLKLGKKVSKVSIGKFTIKKFSTFLPGILLILLGVFR 214 (215) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999988678874045313587788664899999999973 No 26 >pfam03596 Cad Cadmium resistance transporter. Probab=94.01 E-value=0.019 Score=29.85 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=73.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHH Q ss_conf 8899999999977669999999977755307478886768999999999999741246778710135---6788899998 Q gi|254780982|r 37 RPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIP---LSSKSKLFVK 113 (202) Q Consensus 37 ~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~---~~~~~~~f~~ 113 (202) ++-....+|.-+|......++..+.-.+...|.- ++.-+.+..-+++|++.+.....++++++.+ +++..+.+.+ T Consensus 23 ~~~~~IviGqylGf~~Lv~~Sl~~a~g~~~ip~~--wilGlLGliPi~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (192) T pfam03596 23 KSHKHIYIGQYLGSVALVLVSLLFAFVLNLVPEK--WILGLLGLIPIYLGIKVLIKGDDDDEEEILELLNSGKNNSLFGT 100 (192) T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEE T ss_conf 9733888447877999999999999998747999--99998758999999999972766551344444202566770599 Q ss_pred HHHHHHCC-CHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH Q ss_conf 78986327-42578878666-765247733399999999999999999999999999999999-6051389999999999 Q gi|254780982|r 114 GFITDITN-GKAWAFFMAMV-PAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTL-FSSSKFVKIQNRVSAV 190 (202) Q Consensus 114 G~~v~l~N-Pka~~f~~~~~-~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~in~i~g~ 190 (202) =..+++.| - -+-++++ |.|.+. ...+..+...++..... .|++.+.++.++ .-.+...|+=+.+... T Consensus 101 Va~vTiAncG---gDNIgiYvPlFa~~---~~~~l~v~livF~ilv~----vwc~~a~~l~~~p~I~~~l~ryg~~l~p~ 170 (192) T pfam03596 101 VAIITFASCG---ADNIGIFVPYFTTL---SMNNLLVALIVFLIMIL----ILCFIGYRLASIPHVSETLEKYSRWIVAI 170 (192) T ss_pred EEEEEEECCC---CCEEEEEEEECCCC---CHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHCCCHHHH T ss_conf 9999995157---85168975210478---77989999999999999----99999999944815999999834634767 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999960 Q gi|254780982|r 191 VFLLLALRIVA 201 (202) Q Consensus 191 ~li~~ai~l~~ 201 (202) ++++.|++++. T Consensus 171 VlIgLGi~Il~ 181 (192) T pfam03596 171 VYIGLGIYILV 181 (192) T ss_pred HHHHCCEEEEE T ss_conf 70530557889 No 27 >pfam01306 LacY_symp LacY proton/sugar symporter. This family is closely related to the sugar transporter family. Probab=92.06 E-value=0.6 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=12.7 Q ss_pred HHHHHHHHCCCHHHHHHHHH Q ss_conf 98789863274257887866 Q gi|254780982|r 112 VKGFITDITNGKAWAFFMAM 131 (202) Q Consensus 112 ~~G~~v~l~NPka~~f~~~~ 131 (202) .+...--+-||+-|.|.+-+ T Consensus 210 ~~~~~~llk~~~~~~f~l~v 229 (413) T pfam01306 210 LRLALELFRMPKFWVFVLYV 229 (413) T ss_pred HHHHHHHHCCHHHHHHHHHH T ss_conf 77799996154799999999 No 28 >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Probab=91.86 E-value=0.64 Score=22.26 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=92.7 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHH------HHH--HHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHH--HHHHCCHHHHH Q ss_conf 99999999999948994799999------999--8310288999999999--77669999-999977--75530747888 Q gi|254780982|r 6 WIHFLIFTLIITSAPGPGNILTI------NHA--LQHGWRPNKILILGQE--TAVFIIML-SITMGT--KFLSQLAYTML 72 (202) Q Consensus 6 ~l~~~~~~~~~~~~PGP~~~~~i------~~~--~~~G~~~~~~~~~G~~--~g~~~~~~-~~~~g~--~~l~~~~~~~~ 72 (202) ++.+++.++.+.++|=--=++-+ ..+ .++.|+.++.++.|.. +......+ ++..|+ +.-.++|++.. T Consensus 170 ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl~ 249 (569) T COG4232 170 LLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVLG 249 (569) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHH T ss_conf 99999998998620376553899999995555555324666779999999999999999999855461267671568999 Q ss_pred HHHHHHHHHHHHHHHHHH-----HCCCC-----CCCCCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCC Q ss_conf 676899999999999974-----12467-----787101356788899998789863-2742578878666765247733 Q gi|254780982|r 73 IIKFLGVAWLIYSAWSAW-----YSPFN-----DLPLGEIPLSSKSKLFVKGFITDI-TNGKAWAFFMAMVPAYLNMNHY 141 (202) Q Consensus 73 ~l~~~G~~yL~~lg~~~~-----~~~~~-----~~~~~~~~~~~~~~~f~~G~~v~l-~NPka~~f~~~~~~~fi~~~~~ 141 (202) .+.+ ....++..|+ +.+.. ...++..+..+....|..|.+.++ ..|=+-.+-.+.+.. +....+ T Consensus 250 ~la~----lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Y-iaqsg~ 324 (569) T COG4232 250 GLAA----LFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLY-IAQSGN 324 (569) T ss_pred HHHH----HHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHCCH T ss_conf 9999----99999998511301047277766776540156788628999998889872476765127899999-985451 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 39999999999999999999999999999999960513899999999999999999996 Q gi|254780982|r 142 ILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~ 200 (202) ...+...+.+........+ ...+..+ .+..-+...++..+.++.|.+|...++|++ T Consensus 325 ~~~g~~~l~al~LGMg~Pl-llv~~f~--~~~LPk~G~WM~~vK~~fGFvlLa~aiwLl 380 (569) T COG4232 325 ALLGGLALYALGLGMGLPL-LLIGVFG--NRLLPKPGPWMNTVKQAFGFVLLATAIWLL 380 (569) T ss_pred HHHHHHHHHHHHHHCCCCH-HHHEECC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 8789999999987425532-2310024--323899973899999998799999999999 No 29 >PRK10019 nickel/cobalt efflux protein RcnA; Provisional Probab=91.03 E-value=0.79 Score=21.80 Aligned_cols=84 Identities=11% Similarity=0.252 Sum_probs=46.4 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-C-HHHHHHHHHHHHHHHH Q ss_conf 999999999489947999999998--310288999999999776699999999-7775530-7-4788867689999999 Q gi|254780982|r 9 FLIFTLIITSAPGPGNILTINHAL--QHGWRPNKILILGQETAVFIIMLSITM-GTKFLSQ-L-AYTMLIIKFLGVAWLI 83 (202) Q Consensus 9 ~~~~~~~~~~~PGP~~~~~i~~~~--~~G~~~~~~~~~G~~~g~~~~~~~~~~-g~~~l~~-~-~~~~~~l~~~G~~yL~ 83 (202) -+..+..-++.||=.-+++.+.=+ +...|+++...+...+.......+..+ +...-.. . +....+++++.+..++ T Consensus 20 AfllGalHAL~PGHGKt~maAylva~rgt~~qAvlLglaatlsHTavV~llal~~l~~~~~~~~e~~~pwL~~~S~~lI~ 99 (278) T PRK10019 20 AILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIII 99 (278) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998997268982499999999936621999999999999999999999999999998651388899999999999999 Q ss_pred ----HHHHHHHHC Q ss_conf ----999997412 Q gi|254780982|r 84 ----YSAWSAWYS 92 (202) Q Consensus 84 ----~lg~~~~~~ 92 (202) |+-||.||. T Consensus 100 ~iG~wmlwr~~r~ 112 (278) T PRK10019 100 STAFWMFWRTWRG 112 (278) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999977 No 30 >COG2119 Predicted membrane protein [Function unknown] Probab=89.38 E-value=1.1 Score=21.06 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=75.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 799999999831028899999999977669-9999999777553074788867689999999999997412467787101 Q gi|254780982|r 23 GNILTINHALQHGWRPNKILILGQETAVFI-IMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGE 101 (202) Q Consensus 23 ~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~-~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~ 101 (202) ..+..+--+++++++ ++-.|+..+... +.+.+..|-... ++.......|.++.-.+-+|+++++..+.+.++.+ T Consensus 20 T~lia~llA~r~~~~---~v~~g~~~a~~~m~~la~~vG~~~~--~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~~ 94 (190) T COG2119 20 TQLIAMLLAMRYRRW---PVFAGIAIALFAMHALAVLVGHAAA--SLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEAQ 94 (190) T ss_pred HHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 999999999766880---0379999999999999999988875--14844579999999999999998066221311334 Q ss_pred CCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 3567888999987898632---7425788786667652477333999999999999999999999999999999996051 Q gi|254780982|r 102 IPLSSKSKLFVKGFITDIT---NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSS 178 (202) Q Consensus 102 ~~~~~~~~~f~~G~~v~l~---NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (202) ..+++..|.+.|..-.. --|.=+-.+++ +.+.+.. ..++.. ......++...-...+....+++ T Consensus 95 --~~~~~~~f~~tfi~~FlaE~GDKTQiATIaL-----aA~~~~~--~~V~~G-t~lg~~l~s~laVl~G~~ia~ki--- 161 (190) T COG2119 95 --AASPRGVFVTTFITFFLAELGDKTQIATIAL-----AADYHSP--WAVFAG-TTLGMILASVLAVLLGKLIAGKL--- 161 (190) T ss_pred --CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH-----HHCCCCC--EEEEHH-HHHHHHHHHHHHHHHHHHHHCCC--- T ss_conf --4554048999999999999553889999999-----6037996--566163-48999999889999779987117--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3899999999999999999996 Q gi|254780982|r 179 KFVKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 179 ~~~~~in~i~g~~li~~ai~l~ 200 (202) -.|.+.++.|+++..+|+... T Consensus 162 -~~r~l~~~aallFl~fal~~~ 182 (190) T COG2119 162 -PERLLRFIAALLFLIFALVLL 182 (190) T ss_pred -CHHHHHHHHHHHHHHHHHHHH T ss_conf -889999999999999999999 No 31 >TIGR00897 2A0118 polyol permease; InterPro: IPR004748 Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane. Probab=88.66 E-value=1.3 Score=20.79 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=57.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHH-------------HHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5678889999878986327425788-------------786667-65247733399999999999999999999999999 Q gi|254780982|r 103 PLSSKSKLFVKGFITDITNGKAWAF-------------FMAMVP-AYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC 168 (202) Q Consensus 103 ~~~~~~~~f~~G~~v~l~NPka~~f-------------~~~~~~-~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (202) .++++.+...+++.+-..|||..+- +.-++| .+++....+..+-+-.-.+........+..|...| T Consensus 211 t~~ek~~EL~ka~TilftNp~vl~gg~vriIN~ig~fGFavflPmm~~a~~G~StseWLQiWg~~Ff~nIvfN~ifGivG 290 (411) T TIGR00897 211 TTREKFEELGKAVTILFTNPKVLLGGVVRIINTIGLFGFAVFLPMMFLAELGFSTSEWLQIWGTLFFTNIVFNVIFGIVG 290 (411) T ss_pred CCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 66700677740000201078400002788776132213467635899976387402589999999999999999997541 Q ss_pred HHHHHHHHCCHHHHHHH Q ss_conf 99999960513899999 Q gi|254780982|r 169 SKLRTLFSSSKFVKIQN 185 (202) Q Consensus 169 ~~~~~~~~~~~~~~~in 185 (202) +|+.=+ +..+|+- T Consensus 291 dKlGW~----~~V~WFG 303 (411) T TIGR00897 291 DKLGWK----NTVIWFG 303 (411) T ss_pred CCCCCC----CEEEEEC T ss_conf 446873----1667637 No 32 >pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon. Probab=87.44 E-value=1.5 Score=20.38 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=55.9 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-H-HHHHHHHHHHHHHHH Q ss_conf 999999999994899479999999983102889999999997766999999997775-5307-4-788867689999999 Q gi|254780982|r 7 IHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQL-A-YTMLIIKFLGVAWLI 83 (202) Q Consensus 7 l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~-~-~~~~~l~~~G~~yL~ 83 (202) +.|...+.....+==|...++...+-.+.|-+....+--+.+- -+... ....+. +.++ | ....+++-....-+. T Consensus 94 laF~l~Glgv~a~~T~~lALlad~t~e~~R~~~v~i~w~Mli~-G~ivt--A~i~g~lL~~fs~~rLi~v~~~~a~i~~~ 170 (402) T pfam03209 94 LAFLLVGLGVHMSQTVGLALATDLADEEDRPKVVGLMYVMLLV-GIIVS--AITVGWLLADFSPARLIQVIQGVALATMV 170 (402) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999996566275578999998538865669999999999999-99999--99999975646999999999999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9999974124677871013567888999987898632742578878666 Q gi|254780982|r 84 YSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMV 132 (202) Q Consensus 84 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~ 132 (202) .--+..|+..+++.+..+.+ +++...|++..-.-+.||++-.|+.-++ T Consensus 171 l~~~A~wg~E~r~~~~~~~~-~~~~~~f~~a~~~~~~~p~ar~F~~fv~ 218 (402) T pfam03209 171 LNVIALWKQEARRPSRPREE-PRPEPSFLEAWLLFVAEPQARRFLFFLG 218 (402) T ss_pred HHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCEEHHHHHH T ss_conf 99999835666775545677-7789659999999983987300277999 No 33 >pfam02417 Chromate_transp Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP. Probab=83.41 E-value=2.5 Score=19.35 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=54.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHH Q ss_conf 989999999999999948994799-99999983-102889999999997766999999997775530747888---6768 Q gi|254780982|r 2 TLETWIHFLIFTLIITSAPGPGNI-LTINHALQ-HGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTML---IIKF 76 (202) Q Consensus 2 ~~~~~l~~~~~~~~~~~~PGP~~~-~~i~~~~~-~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~---~l~~ 76 (202) |-|++... ....-.+|||... ...-.|.+ +|+..++...+|...--.+.+.........+.++|+... -++. T Consensus 39 t~~~F~~~---~alaq~~PGP~~~n~a~~iG~~~~G~~Ga~~a~~~~~lP~~l~~~~~~~~~~~~~~~~~~~~~l~gv~~ 115 (169) T pfam02417 39 TEEEFLDL---LALAQALPGPNAINLATFVGYRLAGFLGALVATLGFILPSFLLILLLAPLYKRFRDSPWVQAFLAGVKP 115 (169) T ss_pred CHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999---999980786499999999999983467899999999999999999999999998367899999987899 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999999999997412 Q gi|254780982|r 77 LGVAWLIYSAWSAWYS 92 (202) Q Consensus 77 ~G~~yL~~lg~~~~~~ 92 (202) .-.+.++.-++++.|+ T Consensus 116 ~~vgli~~a~~~l~~~ 131 (169) T pfam02417 116 AVVGLILAAAIRLAKK 131 (169) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999998 No 34 >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Probab=75.00 E-value=4.8 Score=17.92 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=55.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89999999997766999999997775530747888676899999999999974124677871013567888999987898 Q gi|254780982|r 38 PNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFIT 117 (202) Q Consensus 38 ~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v 117 (202) .+++.-.++.+.-.+..+.+.+|...+...+....+.-.+-..|++|...+ +.... +....+..+....|..++.. T Consensus 126 ~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~---~~~~~-~~~~~~~~~~~~~fl~a~sl 201 (442) T COG1457 126 TGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFR---SKGGL-DALWVKGPTSPLSFLSALSL 201 (442) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCC-CEEECCCCCCCHHHHHHHHH T ss_conf 899677899999999999999829999999999999999999999999982---14664-42425689861249999999 Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 632742578878666765247733 Q gi|254780982|r 118 DITNGKAWAFFMAMVPAYLNMNHY 141 (202) Q Consensus 118 ~l~NPka~~f~~~~~~~fi~~~~~ 141 (202) ...+|-.|.-+.+=++.|.+..++ T Consensus 202 v~g~~~sw~~~~aDysRy~~~~t~ 225 (442) T COG1457 202 VIGSFASWGPYAADYSRYAPSPTP 225 (442) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999997611110102654578852 No 35 >COG2836 Uncharacterized conserved protein [Function unknown] Probab=74.45 E-value=4.9 Score=17.84 Aligned_cols=170 Identities=14% Similarity=0.061 Sum_probs=86.8 Q ss_pred CCHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-- Q ss_conf 99479-99999998310---2889999999997766999-99999777553074788867689999999999997412-- Q gi|254780982|r 20 PGPGN-ILTINHALQHG---WRPNKILILGQETAVFIIM-LSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYS-- 92 (202) Q Consensus 20 PGP~~-~~~i~~~~~~G---~~~~~~~~~G~~~g~~~~~-~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~-- 92 (202) =||.+ .+...+.-+.. ++..+..=.|-...+.+.- .....| ..+.++-..+.++.++-++.++++|.-..-. T Consensus 24 CGGi~~afs~~~~~~~~~~~~~~~~lyNlGRi~SYallG~i~G~lG-~~l~~~~~~~~~l~i~ag~~li~lGL~l~~~~~ 102 (232) T COG2836 24 CGGIVLAFSLLIPSKVSSSRLKLHLLYNLGRILSYALLGAILGALG-VSLGQSAGLRGVLFIIAGALLIALGLYLLARGG 102 (232) T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 3359999997544434088999999998607999999999999888-999878889999999999999999998854351 Q ss_pred ---C-CCCCCC-----------CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf ---4-677871-----------0135678889999878986327425788786667652477333999999999999999 Q gi|254780982|r 93 ---P-FNDLPL-----------GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD 157 (202) Q Consensus 93 ---~-~~~~~~-----------~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~ 157 (202) . .+.+.. ...+.++.++.+.-|+.=.+. |=..++...... +.. ++. .+-......+-.-+ T Consensus 103 ~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~l-PCGlVYs~l~~A--~~t-gS~-~~Gal~mlaFGlGT 177 (232) T COG2836 103 MWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLL-PCGLVYSALAYA--LST-GSA-FEGALVMLAFGLGT 177 (232) T ss_pred HHHHHHHCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH--HHC-CCH-HHHHHHHHHHHHCC T ss_conf 5667763601005798763234304567630789999885356-548999999999--972-888-88799999986010 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999960513899999999999999999996 Q gi|254780982|r 158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~ 200 (202) ...........+++++.. +|..||.++.++..++++.+ T Consensus 178 lP~ll~~G~~s~~~s~~~-----r~~~~rl~~gl~~v~g~~~l 215 (232) T COG2836 178 LPNLLAMGIFSSKLSKSS-----RKRLNRLSGGLMVVVGLIGL 215 (232) T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH T ss_conf 089999999999999999-----99999998599999999999 No 36 >PRK09528 lacY galactoside permease; Reviewed Probab=70.89 E-value=6.1 Score=17.40 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=12.0 Q ss_pred HHHHHHHCCCHHHHHHHHH Q ss_conf 8789863274257887866 Q gi|254780982|r 113 KGFITDITNGKAWAFFMAM 131 (202) Q Consensus 113 ~G~~v~l~NPka~~f~~~~ 131 (202) +...--+-||+-|.+.+.+ T Consensus 212 ~~~~~llk~~~~~~f~l~~ 230 (418) T PRK09528 212 KDALALFKLPKFWFLVLYV 230 (418) T ss_pred HHHHHHHCCCHHHHHHHHH T ss_conf 9999983674999999999 No 37 >COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=69.35 E-value=6.6 Score=17.22 Aligned_cols=192 Identities=13% Similarity=0.169 Sum_probs=87.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHH--CCHHHHHHHHHHHHH Q ss_conf 999999999948994799999999831--0288999999999776--69999-9999777553--074788867689999 Q gi|254780982|r 8 HFLIFTLIITSAPGPGNILTINHALQH--GWRPNKILILGQETAV--FIIML-SITMGTKFLS--QLAYTMLIIKFLGVA 80 (202) Q Consensus 8 ~~~~~~~~~~~~PGP~~~~~i~~~~~~--G~~~~~~~~~G~~~g~--~~~~~-~~~~g~~~l~--~~~~~~~~l~~~G~~ 80 (202) .-++.+.+-++-||-.-+.+.+.-+.+ ..|+++....-..+-. ..+.+ ....++.... ........++..+.. T Consensus 60 ~SflyGvlHAlgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~ 139 (303) T COG2215 60 LSFLYGVLHALGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFL 139 (303) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999988604898546899999983542114879999999999886999999999999975466776515899999999 Q ss_pred HHH----HHHHHHHHCC----CCC-----------------------CCCC---CC-CCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 999----9999974124----677-----------------------8710---13-56788899998789863274257 Q gi|254780982|r 81 WLI----YSAWSAWYSP----FND-----------------------LPLG---EI-PLSSKSKLFVKGFITDITNGKAW 125 (202) Q Consensus 81 yL~----~lg~~~~~~~----~~~-----------------------~~~~---~~-~~~~~~~~f~~G~~v~l~NPka~ 125 (202) .++ |+-||.+|+. ++. .... +. +..+.+..+..++...+- |=.- T Consensus 140 Lli~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~GLr-PCpg 218 (303) T COG2215 140 LLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGGLR-PCPG 218 (303) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCC-CCCH T ss_conf 999999999999998860257876300257786667765211355545689867723432289999999980676-6837 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHHH Q ss_conf 8878666765247733399999999999999999999999999999999605138-----99999999999999999996 Q gi|254780982|r 126 AFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKF-----VKIQNRVSAVVFLLLALRIV 200 (202) Q Consensus 126 ~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~in~i~g~~li~~ai~l~ 200 (202) .-++-.+..-.+........++.+..+..+ ........+...+....+..+.|. -+.+..+.|.+++.+|+..+ T Consensus 219 Ai~VLlfal~lgl~~~Gil~VlamS~Gtal-Tvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~g~~~l 297 (303) T COG2215 219 AIFVLLFALSLGLYTLGILSVLAMSIGTAL-TVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYFGLHLL 297 (303) T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999945487789999999971799-9999999999999999998154177787889999999999999999999 Q ss_pred C Q ss_conf 0 Q gi|254780982|r 201 A 201 (202) Q Consensus 201 ~ 201 (202) . T Consensus 298 ~ 298 (303) T COG2215 298 L 298 (303) T ss_pred H T ss_conf 8 No 38 >TIGR00802 nico transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family; InterPro: IPR004688 This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterised members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.; GO: 0015099 nickel ion transmembrane transporter activity, 0015675 nickel ion transport, 0016021 integral to membrane. Probab=65.35 E-value=8 Score=16.79 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=46.4 Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHC-CHHHHHHHHHHH----HHHHHHHH------- Q ss_conf 9999998310288---9999999997766999999997----775530-747888676899----99999999------- Q gi|254780982|r 26 LTINHALQHGWRP---NKILILGQETAVFIIMLSITMG----TKFLSQ-LAYTMLIIKFLG----VAWLIYSA------- 86 (202) Q Consensus 26 ~~i~~~~~~G~~~---~~~~~~G~~~g~~~~~~~~~~g----~~~l~~-~~~~~~~l~~~G----~~yL~~lg------- 86 (202) .++|.=+++|+|. |+.+.+|+.+-.+..++....| ...+.+ .+....+=..+| +.||.-+| T Consensus 23 nttRkLmq~G~~P~gvG~fFslGHStVVv~LA~~~~~Glk~~~~~~~~~~~~l~eiGgliGT~vSa~FL~~ia~LN~~iL 102 (290) T TIGR00802 23 NTTRKLMQQGKRPLGVGFFFSLGHSTVVVVLATVLIAGLKVAVALLKERLDLLHEIGGLIGTLVSALFLLIIALLNLVIL 102 (290) T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999762769711134546404108899999999987998426521575531224459999999999999999999999 Q ss_pred ---HHHHHCCCC Q ss_conf ---997412467 Q gi|254780982|r 87 ---WSAWYSPFN 95 (202) Q Consensus 87 ---~~~~~~~~~ 95 (202) ||.+|+..+ T Consensus 103 ~~l~r~Fr~~r~ 114 (290) T TIGR00802 103 RNLLRLFRKVRR 114 (290) T ss_pred HHHHHHHHHHHH T ss_conf 979999888752 No 39 >COG0730 Predicted permeases [General function prediction only] Probab=64.66 E-value=8.3 Score=16.72 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999605138999999999999999999960 Q gi|254780982|r 165 SLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) +..+..+..+..++...+.+++..+.+++..+++++. T Consensus 216 ~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~ 252 (258) T COG0730 216 SILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLL 252 (258) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998679999999999999999999999 No 40 >pfam02674 Colicin_V Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon. Probab=61.99 E-value=9.4 Score=16.45 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 47888676899999999999974 Q gi|254780982|r 68 AYTMLIIKFLGVAWLIYSAWSAW 90 (202) Q Consensus 68 ~~~~~~l~~~G~~yL~~lg~~~~ 90 (202) +....++..+-.....|+..+.. T Consensus 56 ~~~~~~~a~~iifi~~~~i~~~i 78 (145) T pfam02674 56 PALAAIIAFLLIFLLVLLIGSLL 78 (145) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999999 No 41 >TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ; InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.. Probab=60.61 E-value=10 Score=16.32 Aligned_cols=142 Identities=14% Similarity=0.119 Sum_probs=75.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 47999999998310288999999999-77669999999977755307478886768999999999999741246778710 Q gi|254780982|r 22 PGNILTINHALQHGWRPNKILILGQE-TAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLG 100 (202) Q Consensus 22 P~~~~~i~~~~~~G~~~~~~~~~G~~-~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~ 100 (202) |-.+...++|.+.|.-+|+...+=.. .|+..- -..--.+.+.|++-.+..+-+.| .+|++.|+.- + T Consensus 40 PI~L~sfrrG~~~G~~~GLi~GlL~~i~G~ay~--~~l~~~Q~~ldY~laF~~~GlAG----------~F~~~~k~~~-~ 106 (187) T TIGR02357 40 PIVLISFRRGLKAGLVAGLIWGLLKIILGKAYK--NILHPVQVLLDYILAFAALGLAG----------VFASKVKKAL-K 106 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH-H T ss_conf 999999975258998998999999999656512--40008899999878889998998----------8899999987-5 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 1356788899998789863274257887866--67652477333999999999999999-9999999999999999960 Q gi|254780982|r 101 EIPLSSKSKLFVKGFITDITNGKAWAFFMAM--VPAYLNMNHYILPQSLILSLTMVSVD-AMVLMTFSLICSKLRTLFS 176 (202) Q Consensus 101 ~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~--~~~fi~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 176 (202) .+++++....-.-|.++..+-=-.+.|+..+ ++++.+...+..--.+..=.+....+ ..+......+..+..+.+. T Consensus 107 ~~~~~~~~~~~~lG~~~A~l~Ry~~HfiaGviFwG~YAPkG~s~~lYSl~~Ngss~~~~~l~~~ivL~ll~~~~~~~~~ 185 (187) T TIGR02357 107 SKTKKKALVAVILGVLVASLLRYFFHFIAGVIFWGSYAPKGMSAYLYSLIYNGSSALVEALICVIVLILLVKKAPQLFL 185 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 2125789999999999999999998786435301232888832999999999999999999999999999987787406 No 42 >pfam10639 UPF0546 Uncharacterized protein family UPF0546. This family of proteins has no known function. Many members are annotated as potential transmembrane proteins. Probab=56.83 E-value=12 Score=15.98 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=36.7 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 9987898632742578878666765247733399999999-----99999999999999999999999960513899999 Q gi|254780982|r 111 FVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILS-----LTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQN 185 (202) Q Consensus 111 f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 185 (202) +.+....-+.|||-++=++ +|+..+... ++.+. .+........+.. ..+..+...++.... + T Consensus 30 ~~~~~~~l~~n~~y~vPfl------lNqsGSv~f-~~lL~~~~lSlaVPi~NslaF~f-----T~i~~~~lgek~~~~-~ 96 (112) T pfam10639 30 FLLEFKFLFLRPKYLIPFL------LNQSGSVVF-FLLLGKTDLSLAVPIANSLAFVF-----TVLTGWLLGEKVLGR-K 96 (112) T ss_pred HHHHHHHHHCCHHHHHHHH------HHHHHHHHH-HHHHCCCCEEEEEECHHHHHHHH-----HHHHHHHHCCCCCCH-H T ss_conf 9999999980869999999------970568999-99870577047500231799999-----999999963666745-7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780982|r 186 RVSAVVFLLLALRI 199 (202) Q Consensus 186 ~i~g~~li~~ai~l 199 (202) ...|..++..|+.+ T Consensus 97 t~lG~~Lv~~Gi~L 110 (112) T pfam10639 97 TWLGMGLVVAGTAL 110 (112) T ss_pred HHHHHHHHHHCCEE T ss_conf 89999899805022 No 43 >TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.. Probab=49.45 E-value=16 Score=15.34 Aligned_cols=162 Identities=15% Similarity=0.229 Sum_probs=84.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----C Q ss_conf 99999983102889999999997766999999997775530-747888676899999999999974124677871----0 Q gi|254780982|r 26 LTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQ-LAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPL----G 100 (202) Q Consensus 26 ~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~-~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~----~ 100 (202) ++..++-.+-+++-=-.-.|.=+|..+.+....++...+.+ .|. +.++.++| ..=+|||++.|-....+.++ + T Consensus 12 Ll~~f~~~Kt~~~~kdI~iGQYlG~~ili~vSLl~afgv~nliPe-kWvlGLLG-LiPiYLGik~~Ikge~ded~~a~l~ 89 (196) T TIGR00779 12 LLILFARAKTRKEVKDIYIGQYLGSIILILVSLLLAFGVVNLIPE-KWVLGLLG-LIPIYLGIKVFIKGEEDEDERAILS 89 (196) T ss_pred HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHH-HHHHHHCEEEEEECCCCCHHHHHHH T ss_conf 999974220268733268833688999999999998888750641-47677764-5347423176774587613688887 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Q ss_conf 13567888999987898632742578878666-7652477333999999999999999999999999999999996---- Q gi|254780982|r 101 EIPLSSKSKLFVKGFITDITNGKAWAFFMAMV-PAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLF---- 175 (202) Q Consensus 101 ~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~-~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (202) ..++.+..+.|.+=..+++.|-- .+-.+++ |-|.... ..+.++-..++... -..|++.+.|+..+- T Consensus 90 l~~~GK~n~lfltvafit~asCg--aDnigiyvPyF~TLs---~~~l~~t~ivFlIm----v~~l~f~~yrLA~f~~isE 160 (196) T TIGR00779 90 LLESGKLNKLFLTVAFITLASCG--ADNIGIYVPYFVTLS---MTELLVTLIVFLIM----VAVLCFVAYRLAAFDFISE 160 (196) T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--CCCCEEECCCCHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCEE T ss_conf 63148445666566543211367--564304516301545---99999999999999----9999999888742786302 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 05138999999999999999999960 Q gi|254780982|r 176 SSSKFVKIQNRVSAVVFLLLALRIVA 201 (202) Q Consensus 176 ~~~~~~~~in~i~g~~li~~ai~l~~ 201 (202) .=+|+.|| +.+.++++.|++++. T Consensus 161 ~~Eky~RW---I~pIvfIgLGiyI~~ 183 (196) T TIGR00779 161 TVEKYSRW---IVPIVFIGLGIYILI 183 (196) T ss_pred EEECCCCC---HHHHHHHHHCCEEEE T ss_conf 55426750---045543310123667 No 44 >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Probab=46.83 E-value=17 Score=15.12 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=8.7 Q ss_pred HHHHHCCCHHHHHHHH Q ss_conf 8986327425788786 Q gi|254780982|r 115 FITDITNGKAWAFFMA 130 (202) Q Consensus 115 ~~v~l~NPka~~f~~~ 130 (202) +.--+.||-.|.-.++ T Consensus 245 ~~YVL~Nk~iW~la~a 260 (448) T COG2271 245 VKYVLKNKLIWLLALA 260 (448) T ss_pred HHHHHCCCHHHHHHHH T ss_conf 9999728099999999 No 45 >PRK10473 multidrug efflux system protein MdtL; Provisional Probab=41.66 E-value=21 Score=14.69 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCH Q ss_conf 999999999999999960513 Q gi|254780982|r 159 MVLMTFSLICSKLRTLFSSSK 179 (202) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ 179 (202) .....-.....++.++...++ T Consensus 250 ~~~~~gs~l~~~l~~r~g~~~ 270 (392) T PRK10473 250 GVSMTVSFSTPFALGIFKPRT 270 (392) T ss_pred HHHHHHHHHHHHHHHHHCHHH T ss_conf 999999999999999957999 No 46 >pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81. Probab=39.04 E-value=23 Score=14.47 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999996051389999999999999999999 Q gi|254780982|r 165 SLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRI 199 (202) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l 199 (202) .+.+.++.++.+ .+.++++..+++...|+++ T Consensus 206 ~~lG~~l~~ki~----~~~~r~~~~~~l~~~gi~m 236 (236) T pfam01925 206 ALLGARLARRLP----PRLLRRLFAVLLLLVGLKL 236 (236) T ss_pred HHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHC T ss_conf 999999998889----9999999999999999879 No 47 >COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism] Probab=35.80 E-value=27 Score=14.20 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 288999999999776699999999777 Q gi|254780982|r 36 WRPNKILILGQETAVFIIMLSITMGTK 62 (202) Q Consensus 36 ~~~~~~~~~G~~~g~~~~~~~~~~g~~ 62 (202) .+.++.+++|.-+|..+-..+..++++ T Consensus 82 l~~Ai~vilGANIGTtvTa~iva~~l~ 108 (533) T COG1283 82 LKQAIGVILGANIGTTVTAWIVALDLS 108 (533) T ss_pred HHHHHHHEECCCHHHHHHHHHHHHHHH T ss_conf 120244102353558999999998545 No 48 >PRK11102 bicyclomycin/multidrug efflux system; Provisional Probab=35.38 E-value=27 Score=14.16 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHCCCHHHHH Q ss_conf 89999878986327425788 Q gi|254780982|r 108 SKLFVKGFITDITNGKAWAF 127 (202) Q Consensus 108 ~~~f~~G~~v~l~NPka~~f 127 (202) .+...+.+..-+.||+.+.. T Consensus 180 ~~~~~~~~~~~l~~~~~~~~ 199 (377) T PRK11102 180 LRTTIRNFASLFRHKRVLGY 199 (377) T ss_pred HHHHHHHHHHHHHCHHHHHH T ss_conf 99999999999958689999 No 49 >COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism] Probab=33.65 E-value=29 Score=14.01 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=46.8 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHH Q ss_conf 99999948994799999999831----0288999999999776699999999777553074-788867689999999999 Q gi|254780982|r 12 FTLIITSAPGPGNILTINHALQH----GWRPNKILILGQETAVFIIMLSITMGTKFLSQLA-YTMLIIKFLGVAWLIYSA 86 (202) Q Consensus 12 ~~~~~~~~PGP~~~~~i~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~-~~~~~l~~~G~~yL~~lg 86 (202) .+..+=..-|-+|+.+++--.++ -++++... |...+.+.=......+ +.+.+.+ +.+.+ .+.||+|.+ T Consensus 22 tl~~lE~vL~iDN~iviai~~~~Lp~~qr~kal~~--Gl~~A~v~R~~ll~~~-s~Ll~l~~~l~~~----fg~~L~~~~ 94 (254) T COG0861 22 TLILLEIVLGIDNAIVIAILASKLPPKQRKKALFI--GLAGALVLRIILLASI-SWLLTLTQPLLYI----FGLYLLWRD 94 (254) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHH T ss_conf 99999999872499999999823899998799999--9999999999999999-9999803899999----999999999 Q ss_pred HHHHHCCCCC Q ss_conf 9974124677 Q gi|254780982|r 87 WSAWYSPFND 96 (202) Q Consensus 87 ~~~~~~~~~~ 96 (202) +++++..... T Consensus 95 ~~ll~~~~~~ 104 (254) T COG0861 95 IKLLLGGLFL 104 (254) T ss_pred HHHHHCCHHH T ss_conf 9997243037 No 50 >PRK10062 hypothetical protein; Provisional Probab=29.48 E-value=34 Score=13.64 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=67.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCCCC-------C Q ss_conf 28899999999977669999999977755-30-7478886768999999999999741----2467787101-------3 Q gi|254780982|r 36 WRPNKILILGQETAVFIIMLSITMGTKFL-SQ-LAYTMLIIKFLGVAWLIYSAWSAWY----SPFNDLPLGE-------I 102 (202) Q Consensus 36 ~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~-~~~~~~~l~~~G~~yL~~lg~~~~~----~~~~~~~~~~-------~ 102 (202) ..+-+|++-.+.-|...==+ +..-.+++ .. .||....+-.+|+.||.|=|.+-.- ....+.+..+ . T Consensus 51 a~RELPvvw~IakGSl~NKl-IllP~ALllSaf~Pw~i~plLmlGG~yLcfEGaEKv~h~~~~~~~~~~~~~~~~~~~~~ 129 (303) T PRK10062 51 ANRELPVVWGVAKGSLINKV-ILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPAQRQQRLEKL 129 (303) T ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC T ss_conf 44421467999875265228-99989999999989999999996458967702999999973665534435565543124 Q ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------56788899998789863274257887866676524773339999999999999999999999999 Q gi|254780982|r 103 --------PLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLI 167 (202) Q Consensus 103 --------~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 167 (202) ++++-+...++-|+.+. =+...++- .-.+++...|...+..+.+.++...|...+.. T Consensus 130 ~~~d~~~~E~~kikgAIrTDfILSa-----EImvIaL~---~V~~~~~~~q~~vL~~Vai~iTv~VYG~ValI 194 (303) T PRK10062 130 AAQDPLKFEKDKVKGAIRTDFILSA-----EIVAITLG---IVAEAPLLNQVLVLSGIALVVTVGVYGLVGVI 194 (303) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE T ss_conf 5455678899987637787478869-----99999850---13564199999999999999999998474137 No 51 >KOG2881 consensus Probab=28.33 E-value=36 Score=13.53 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHH--CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 9999999999994--899479999-99998310288999999999776699-9999997775530747888676899999 Q gi|254780982|r 6 WIHFLIFTLIITS--APGPGNILT-INHALQHGWRPNKILILGQETAVFII-MLSITMGTKFLSQLAYTMLIIKFLGVAW 81 (202) Q Consensus 6 ~l~~~~~~~~~~~--~PGP~~~~~-i~~~~~~G~~~~~~~~~G~~~g~~~~-~~~~~~g~~~l~~~~~~~~~l~~~G~~y 81 (202) ++..+...+.+++ -.|--.+.+ .--+++|+|+.-+ .|...+-.+. ++.+.+|-+.-.-.|. .+-.+++... T Consensus 65 ~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf---~Ga~~AL~lMTiLS~~lG~aap~lipr--~~T~~~~t~L 139 (294) T KOG2881 65 FLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVF---SGAMSALALMTILSVLLGWAAPNLIPR--KYTYYLATAL 139 (294) T ss_pred HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHH T ss_conf 99999887651145201523899999998644306688---778999999999999987752220128--9999999999 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999974124 Q gi|254780982|r 82 LIYSAWSAWYSP 93 (202) Q Consensus 82 L~~lg~~~~~~~ 93 (202) .+.+|+++.+.. T Consensus 140 F~iFGlkmL~eg 151 (294) T KOG2881 140 FLIFGLKMLKEG 151 (294) T ss_pred HHHHHHHHHHHH T ss_conf 999989999877 No 52 >pfam12263 DUF3611 Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important. Probab=25.25 E-value=42 Score=13.23 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=45.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-C----HH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9947999999998310288999999--9997766999999997775530-7----47-8886768999999999999741 Q gi|254780982|r 20 PGPGNILTINHALQHGWRPNKILIL--GQETAVFIIMLSITMGTKFLSQ-L----AY-TMLIIKFLGVAWLIYSAWSAWY 91 (202) Q Consensus 20 PGP~~~~~i~~~~~~G~~~~~~~~~--G~~~g~~~~~~~~~~g~~~l~~-~----~~-~~~~l~~~G~~yL~~lg~~~~~ 91 (202) |=|....-++++.+.--+-+++.-+ |.+.+-++......-+...-.+ . +. .+....++-..+=+|.+|+.-| T Consensus 2 ~~~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iLlF~~~~~~~~~~~~~~~g~~~gl~la~~glv~l~~Si~~~fry~r 81 (183) T pfam12263 2 PVSPALERLARGLRLLGWIGFWIQLVLGVVSALILLFAVLFSGLVRSPDRNLGLGIGLFLTIIGLIALGFSIFFAFRYTR 81 (183) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 98889999999999989999999999999999999999997045678876666208999999999999999999988999 Q ss_pred CCCCCC--CCCCCCCC-CHHHHHHHHHHHHHC Q ss_conf 246778--71013567-888999987898632 Q gi|254780982|r 92 SPFNDL--PLGEIPLS-SKSKLFVKGFITDIT 120 (202) Q Consensus 92 ~~~~~~--~~~~~~~~-~~~~~f~~G~~v~l~ 120 (202) -..+-. +.+..|++ +-.+..+.|+.+|+. T Consensus 82 lg~~L~~~~~~~rP~r~~~~r~lr~Gl~~nLv 113 (183) T pfam12263 82 LGRRLRNPDPAKRPSRADTVRLLRLGLIINLL 113 (183) T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99985558887899889999999999999999 No 53 >pfam05631 DUF791 Protein of unknown function (DUF791). This family consists of several eukaryotic proteins of unknown function. Probab=24.43 E-value=43 Score=13.15 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=41.4 Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHH-------HH------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6788899998789863274257887-------86------6676524773339999999999999999999999999999 Q gi|254780982|r 104 LSSKSKLFVKGFITDITNGKAWAFF-------MA------MVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSK 170 (202) Q Consensus 104 ~~~~~~~f~~G~~v~l~NPka~~f~-------~~------~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (202) +++..+.+++|.-.-..|||.+.-- .+ +.++-+++.+...+ ++.++..........=...++. T Consensus 226 ~~~~~~~~~~a~~~i~~d~~il~LG~iQSLFEgsMYiFVFlWTPaL~~~~~~iP----~GlIFs~FM~a~MlGSslf~~l 301 (354) T pfam05631 226 KKDLKEQFKVAAQAIASDPNVFCLGLVQSLFEGSMYTFVFLWTPALSPNDEEIP----HGFIFATFMLASMLGSSVAARL 301 (354) T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC----CEEHHHHHHHHHHHHHHHHHHH T ss_conf 502678999999999728017999999999887687505564365389999999----5013998999999877999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 999960513899999999999999 Q gi|254780982|r 171 LRTLFSSSKFVKIQNRVSAVVFLL 194 (202) Q Consensus 171 ~~~~~~~~~~~~~in~i~g~~li~ 194 (202) ..|..+.++..+.+-.+++..|.. T Consensus 302 ~~~~~~~e~~m~~v~~~~a~sl~~ 325 (354) T pfam05631 302 LQRHLRVESYMQIVFLLSAVCLSL 325 (354) T ss_pred HHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 870367899999999999999878 No 54 >PRK10263 DNA translocase FtsK; Provisional Probab=23.59 E-value=45 Score=13.06 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999489-94799999999831028899999999977669999999977755307478886768999999999 Q gi|254780982|r 7 IHFLIFTLIITSAP-GPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYS 85 (202) Q Consensus 7 l~~~~~~~~~~~~P-GP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~l 85 (202) ++..++...+.+.| -|+. +++.=++.-+.+--..|.+++|.++. .||+ +.+.==..++.+ T Consensus 33 ~Ai~LmvALlSFnPSDPSW----SQTAWhepIhNlGG~~GAWlADTLFf---~FGv------------LAY~iP~im~~~ 93 (1355) T PRK10263 33 FAVWLMAALLSFNPSDPSW----SQTAWHEPIHNLGGMPGAWLADTLFF---IFGV------------MAYTIPVIIVGG 93 (1355) T ss_pred HHHHHHHHHHCCCCCCCCC----CCCCCCCHHHCCCCCHHHHHHHHHHH---HHHH------------HHHHHHHHHHHH T ss_conf 9999999995268899884----33477862001576351899989999---9899------------998899999999 Q ss_pred HHHHHHCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 99974124677871013567----8889999878986327425788786 Q gi|254780982|r 86 AWSAWYSPFNDLPLGEIPLS----SKSKLFVKGFITDITNGKAWAFFMA 130 (202) Q Consensus 86 g~~~~~~~~~~~~~~~~~~~----~~~~~f~~G~~v~l~NPka~~f~~~ 130 (202) +|..||.+......+--.-. .....+.+..-+.-+|.--+-+|.+ T Consensus 94 cW~~fR~r~~~~~iDyf~~slRLiG~LaLiLTSCGLAalN~DDi~YFaS 142 (1355) T PRK10263 94 CWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFAS 142 (1355) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999986156766008999999999999999700465417411110257 No 55 >COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism] Probab=22.70 E-value=47 Score=12.97 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HH Q ss_conf 9989999999999999948994799999-999831-028899999999977669999999977755307478886---76 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTI-NHALQH-GWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLI---IK 75 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i-~~~~~~-G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~---l~ 75 (202) ||-|++... ...-...|||+...+. -.|-+. |.+.++...++-+.-..+.+.....-...+.+.|....+ +| T Consensus 43 is~~ef~~~---laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~~v~~~~~glk 119 (195) T COG2059 43 ISEEEFADA---LAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLPLVKGILKGLK 119 (195) T ss_pred CCHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 899999999---99980389779999999999998555489999999998999999999999998275639999999999 Q ss_pred HHHHHHHHHHHHHHHHCCC Q ss_conf 8999999999999741246 Q gi|254780982|r 76 FLGVAWLIYSAWSAWYSPF 94 (202) Q Consensus 76 ~~G~~yL~~lg~~~~~~~~ 94 (202) ..-...++-..|++.|+.. T Consensus 120 ~~ii~lv~~~~~~l~~~~~ 138 (195) T COG2059 120 PAIIALVLQAVWRLGKKAL 138 (195) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999861 No 56 >COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only] Probab=22.29 E-value=48 Score=12.92 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 89999999997766999999997775--53074788867689999999999997412 Q gi|254780982|r 38 PNKILILGQETAVFIIMLSITMGTKF--LSQLAYTMLIIKFLGVAWLIYSAWSAWYS 92 (202) Q Consensus 38 ~~~~~~~G~~~g~~~~~~~~~~g~~~--l~~~~~~~~~l~~~G~~yL~~lg~~~~~~ 92 (202) .....++-...|-++=.+.+.+...- ....|....++..++...|.|+|++..-. T Consensus 76 ~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k 132 (356) T COG4956 76 LPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADK 132 (356) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 689999998788999999999985377627960777689999999999973677640 No 57 >COG5524 Bacteriorhodopsin [General function prediction only] Probab=21.64 E-value=50 Score=12.85 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999960 Q gi|254780982|r 153 MVSVDAMVLMTFSLICSKLRTLFS 176 (202) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202) ....++..+..+.+...+.++.+. T Consensus 230 y~vLDl~~kv~f~~~ll~~~~~~g 253 (285) T COG5524 230 YGVLDLFAKVGFPFLLLRGARNFG 253 (285) T ss_pred EEHHHHHHHHHHHHHHHHHHHHCC T ss_conf 103798988719999999998618 No 58 >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process. Probab=21.61 E-value=8.6 Score=16.63 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHHHCCCHHH Q ss_conf 8999999999999994899479 Q gi|254780982|r 3 LETWIHFLIFTLIITSAPGPGN 24 (202) Q Consensus 3 ~~~~l~~~~~~~~~~~~PGP~~ 24 (202) +|.+.+.....=.++++|||.+ T Consensus 45 ie~L~P~~~lfdaivisPGPC~ 66 (212) T TIGR00566 45 IEALLPLLPLFDAIVISPGPCT 66 (212) T ss_pred HHHHCCCCCCCCEEEECCCCCC T ss_conf 8763113563345676586568 No 59 >COG4280 Predicted membrane protein [Function unknown] Probab=21.51 E-value=50 Score=12.84 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=47.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 9989999999999999948994799999999831028899999999977669999-999977755307478886768999 Q gi|254780982|r 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIML-SITMGTKFLSQLAYTMLIIKFLGV 79 (202) Q Consensus 1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~-~~~~g~~~l~~~~~~~~~l~~~G~ 79 (202) |+++.+++-+...++=..--+ ..+...+-.++.|.++ .|...|..+... ...+|-. +.-.| .+++++..+ T Consensus 1 Mnwsi~lAAl~sSlvElvEa~---aIa~avg~~~~wr~al---~ga~lglalvl~l~lvlGk~-L~lvP--ln~lqiv~g 71 (236) T COG4280 1 MNWSIFLAALGSSLVELVEAG---AIAAAVGNIYKWRLAL---IGAVLGLALVLILTLVLGKL-LYLVP--LNYLQIVSG 71 (236) T ss_pred CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHCCC-EEEEE--CHHHHHHHH T ss_conf 959999999998899999998---8987210120331788---99999999999999997564-03530--309999999 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999741246 Q gi|254780982|r 80 AWLIYSAWSAWYSPF 94 (202) Q Consensus 80 ~yL~~lg~~~~~~~~ 94 (202) ..|+|+|+|-.|+.. T Consensus 72 vLLllFG~rw~Rsav 86 (236) T COG4280 72 VLLLLFGYRWIRSAV 86 (236) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999789999999 No 60 >TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase; InterPro: IPR006318 These sequences are a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport. ; GO: 0016772 transferase activity transferring phosphorus-containing groups. Probab=21.36 E-value=50 Score=12.82 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=40.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHCCHHHH Q ss_conf 899479999999983102889999-99999776699-999999777553074788 Q gi|254780982|r 19 APGPGNILTINHALQHGWRPNKIL-ILGQETAVFII-MLSITMGTKFLSQLAYTM 71 (202) Q Consensus 19 ~PGP~~~~~i~~~~~~G~~~~~~~-~~G~~~g~~~~-~~~~~~g~~~l~~~~~~~ 71 (202) +|-|..+-++..=+..|...+.|+ +||...||=.. -++.++|+.-++-++... T Consensus 486 ~~nPavLrLIk~V~~~~~~~g~wvg~CGEmAGD~~a~plLlGlGl~ElSm~A~si 540 (576) T TIGR01417 486 PYNPAVLRLIKLVIDAAKQEGIWVGMCGEMAGDELAIPLLLGLGLRELSMSASSI 540 (576) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHCCCHHH T ss_conf 7888999999999987875699647506650578999998504730211242137 No 61 >pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. Probab=21.15 E-value=51 Score=12.80 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=58.2 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC Q ss_conf 99777553074788867689999999999997412467787101356788899998789863274257887866676524 Q gi|254780982|r 58 TMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLN 137 (202) Q Consensus 58 ~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~ 137 (202) ..|+-.+-|-+.....+--+.+.-++-.|.. ....++.++++.++ .+.+++|+..-+..--.+..|..+ |+..+ T Consensus 87 L~Gv~~fgEW~t~~~~~~G~~Al~liiiG~~--lTs~~~~~~~~~~~---~~~~~kgi~~LlistiGY~~Y~v~-p~~~~ 160 (268) T pfam06800 87 LFGVLVFGEWSTSMQKILGFLALILIIIGIY--LTSLQDKKEAKVES---SKNLKKGIILLLISTIGYVGYVVL-PQLFK 160 (268) T ss_pred HHHHHEECCCCCHHHHHHHHHHHHHHHHHHH--EEEEECCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHH-HHHHC T ss_conf 9987100446517899999999999997271--37631365556765---110552767886674136215454-88608 Q ss_pred CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 77--333999999999999999999999999999999996051389999999999999999999609 Q gi|254780982|r 138 MN--HYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 (202) Q Consensus 138 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s 202 (202) .+ +...+|.+-+..... .+ .. .+ ++... +...+.|.+.|+....-.+.++.| T Consensus 161 ~~g~~~~lPQaiGm~iga~-----i~---~~--~~-~~~~~--~k~~~~nii~G~~w~ignl~~~~S 214 (268) T pfam06800 161 VDGLSAILPQAIGMVIGAL-----IF---SL--KN-FKVFF--EKYTWLNIIPGLFWGIGNLFMLIS 214 (268) T ss_pred CCHHHEECHHHHHHHHHHH-----HH---HH--HC-CCCCH--HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8733136177899999999-----99---98--45-54313--577999876569999999999862 No 62 >TIGR02849 spore_III_AD stage III sporulation protein AD; InterPro: IPR014211 Members of this entry represent the uncharacterised protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. The operon is regulated by sigmaG . Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon.. Probab=20.22 E-value=53 Score=12.69 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=25.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 07478886768999999999999741246778 Q gi|254780982|r 66 QLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDL 97 (202) Q Consensus 66 ~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~ 97 (202) |.-+...++|++|-+|+.=+|=+.-|++..+. T Consensus 38 ~~~Y~~tvLKIIGIAYiaeFGs~~c~DAG~~~ 69 (101) T TIGR02849 38 DSVYLETVLKIIGIAYIAEFGSQICKDAGEKA 69 (101) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 36899999999999999999999988634603 Done!