Query         gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 202
No_of_seqs    115 out of 3554
Neff          8.3 
Searched_HMMs 39220
Date          Mon May 30 03:26:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10520 rhtB homoserine/homos 100.0       0       0  290.8  26.3  202    1-202     1-203 (205)
  2 PRK10958 leucine export protei 100.0       0       0  267.2  25.5  201    1-201     2-210 (213)
  3 PRK10229 threonine efflux syst 100.0       0       0  258.1  25.4  199    3-202     2-205 (206)
  4 COG1280 RhtB Putative threonin 100.0       0       0  257.0  26.0  202    1-202     1-206 (208)
  5 pfam01810 LysE LysE type trans 100.0       0       0  257.3  22.0  188   15-202     2-191 (191)
  6 PRK10323 neutral amino-acid ef 100.0 2.8E-45       0  243.5  25.0  193    1-200     1-194 (195)
  7 TIGR00949 2A76 Homoserine/Thre 100.0 9.4E-44       0  235.4  19.6  181   19-199     1-194 (194)
  8 COG1279 Lysine efflux permease 100.0 1.7E-32 4.3E-37  179.4  22.2  197    2-202     1-201 (202)
  9 PRK09304 arginine exporter pro 100.0 9.9E-30 2.5E-34  165.7  20.5  181   17-201     2-186 (197)
 10 TIGR00948 2a75 L-lysine export 100.0 9.4E-28 2.4E-32  155.8  17.2  174   17-192     2-213 (213)
 11 pfam11139 DUF2910 Protein of u  99.3 8.1E-09 2.1E-13   61.6  21.8  190   11-202     3-209 (212)
 12 PRK11111 hypothetical protein;  99.0 2.3E-07 5.7E-12   54.4  18.8  194    1-202     5-203 (214)
 13 PRK10995 multiple drug resista  98.9 2.4E-06 6.2E-11   49.2  19.8  196    1-202     2-211 (222)
 14 pfam01914 MarC MarC family int  98.6 1.5E-05 3.9E-10   45.3  16.6  190    5-202     3-197 (203)
 15 PRK10739 putative dITP- and XT  98.5 2.6E-05 6.6E-10   44.1  17.0  188    3-202     1-189 (197)
 16 pfam02683 DsbD Cytochrome C bi  98.5   3E-05 7.6E-10   43.8  18.4  160   37-201    39-206 (206)
 17 COG2095 MarC Multiple antibiot  98.2 0.00019 4.7E-09   39.9  16.9  188    1-202     1-194 (203)
 18 TIGR00427 TIGR00427 conserved   98.1 0.00038 9.6E-09   38.3  17.6  184    3-202     7-204 (206)
 19 PRK00293 dipZ thiol:disulfide   97.8  0.0011 2.8E-08   36.0  18.5  190    4-201   172-385 (577)
 20 PRK11469 hypothetical protein;  97.8  0.0013 3.3E-08   35.7  18.2  119   67-201    80-201 (206)
 21 COG0785 CcdA Cytochrome c biog  97.7  0.0022 5.5E-08   34.6  19.3  193    6-200    13-220 (220)
 22 pfam03741 TerC Integral membra  96.9   0.018 4.6E-07   30.0  18.9  165   20-202    10-183 (184)
 23 COG1971 Predicted membrane pro  96.5   0.037 9.5E-07   28.4  19.7  162   24-201    18-185 (190)
 24 pfam05758 Ycf1 Ycf1. The chlor  96.4   0.044 1.1E-06   28.0  10.5  122    9-137     6-136 (832)
 25 TIGR02840 spore_YtaF putative   94.7    0.21 5.3E-06   24.7  13.2  167   29-199    16-214 (215)
 26 pfam03596 Cad Cadmium resistan  94.0   0.019 4.9E-07   29.8   0.9  153   37-201    23-181 (192)
 27 pfam01306 LacY_symp LacY proto  92.1     0.6 1.5E-05   22.4  13.7   20  112-131   210-229 (413)
 28 COG4232 Thiol:disulfide interc  91.9    0.64 1.6E-05   22.3  14.9  187    6-200   170-380 (569)
 29 PRK10019 nickel/cobalt efflux   91.0    0.79   2E-05   21.8  20.4   84    9-92     20-112 (278)
 30 COG2119 Predicted membrane pro  89.4     1.1 2.8E-05   21.1  14.5  159   23-200    20-182 (190)
 31 TIGR00897 2A0118 polyol permea  88.7     1.3 3.2E-05   20.8   5.8   79  103-185   211-303 (411)
 32 pfam03209 PUCC PUCC protein. T  87.4     1.5 3.9E-05   20.4  16.5  122    7-132    94-218 (402)
 33 pfam02417 Chromate_transp Chro  83.4     2.5 6.3E-05   19.3  11.6   88    2-92     39-131 (169)
 34 COG1457 CodB Purine-cytosine p  75.0     4.8 0.00012   17.9  13.9  100   38-141   126-225 (442)
 35 COG2836 Uncharacterized conser  74.4     4.9 0.00013   17.8  19.7  170   20-200    24-215 (232)
 36 PRK09528 lacY galactoside perm  70.9     6.1 0.00015   17.4  14.2   19  113-131   212-230 (418)
 37 COG2215 ABC-type uncharacteriz  69.3     6.6 0.00017   17.2  23.2  192    8-201    60-298 (303)
 38 TIGR00802 nico transition meta  65.4       8  0.0002   16.8   5.9   70   26-95     23-114 (290)
 39 COG0730 Predicted permeases [G  64.7     8.3 0.00021   16.7  18.8   37  165-201   216-252 (258)
 40 pfam02674 Colicin_V Colicin V   62.0     9.4 0.00024   16.5   8.4   23   68-90     56-78  (145)
 41 TIGR02357 thia_yuaJ probable p  60.6      10 0.00025   16.3  11.2  142   22-176    40-185 (187)
 42 pfam10639 UPF0546 Uncharacteri  56.8      12  0.0003   16.0   3.4   76  111-199    30-110 (112)
 43 TIGR00779 cad cadmium resistan  49.4      16  0.0004   15.3   4.1  162   26-201    12-183 (196)
 44 COG2271 UhpC Sugar phosphate p  46.8      17 0.00044   15.1   4.0   16  115-130   245-260 (448)
 45 PRK10473 multidrug efflux syst  41.7      21 0.00054   14.7  19.7   21  159-179   250-270 (392)
 46 pfam01925 TauE Sulfite exporte  39.0      23  0.0006   14.5  19.4   31  165-199   206-236 (236)
 47 COG1283 NptA Na+/phosphate sym  35.8      27 0.00068   14.2  10.7   27   36-62     82-108 (533)
 48 PRK11102 bicyclomycin/multidru  35.4      27 0.00069   14.2  19.7   20  108-127   180-199 (377)
 49 COG0861 TerC Membrane protein   33.6      29 0.00074   14.0  17.2   78   12-96     22-104 (254)
 50 PRK10062 hypothetical protein;  29.5      34 0.00088   13.6  10.9  123   36-167    51-194 (303)
 51 KOG2881 consensus               28.3      36 0.00092   13.5   8.1   83    6-93     65-151 (294)
 52 pfam12263 DUF3611 Protein of u  25.3      42  0.0011   13.2   9.4  101   20-120     2-113 (183)
 53 pfam05631 DUF791 Protein of un  24.4      43  0.0011   13.1  11.8   87  104-194   226-325 (354)
 54 PRK10263 DNA translocase FtsK;  23.6      45  0.0011   13.1  10.8  105    7-130    33-142 (1355)
 55 COG2059 ChrA Chromate transpor  22.7      47  0.0012   13.0  12.9   91    1-94     43-138 (195)
 56 COG4956 Integral membrane prot  22.3      48  0.0012   12.9   8.3   55   38-92     76-132 (356)
 57 COG5524 Bacteriorhodopsin [Gen  21.6      50  0.0013   12.9   7.8   24  153-176   230-253 (285)
 58 TIGR00566 trpG_papA glutamine   21.6     8.6 0.00022   16.6  -2.5   22    3-24     45-66  (212)
 59 COG4280 Predicted membrane pro  21.5      50  0.0013   12.8  12.9   85    1-94      1-86  (236)
 60 TIGR01417 PTS_I_fam phosphoeno  21.4      50  0.0013   12.8   1.6   53   19-71    486-540 (576)
 61 pfam06800 Sugar_transport Suga  21.1      51  0.0013   12.8  10.0  126   58-202    87-214 (268)
 62 TIGR02849 spore_III_AD stage I  20.2      53  0.0014   12.7   3.4   32   66-97     38-69  (101)

No 1  
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=100.00  E-value=0  Score=290.78  Aligned_cols=202  Identities=27%  Similarity=0.465  Sum_probs=191.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
Q ss_conf             9989999999999999948994799999999831028899999999977669999999977755-307478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~   79 (202)
                      ||+|.|+.|+.+++..+++|||++++++++++++|+|++++.++|+.+|+.++...+..|++.+ .++|..+.++|++|+
T Consensus         1 M~l~~~l~f~~~~~~~~itPGP~~~~vi~~~~~~G~r~~~~~~~G~~~G~~~~~~la~~Gl~~l~~~~p~~f~~lk~~Ga   80 (205)
T PRK10520          1 MTLEWWLAYLLTSIILSLSPGSGAINTMSTSLSHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGA   80 (205)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999996298688999999998858898999999999999999999999999999978999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999974124677871013567888999987898632742578878666765247733399999999999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM  159 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~  159 (202)
                      .||+|+|++.||++.+..++++.+.++..+.|++|+++|++|||+++||.+++|||++++++...|.+.+..++...+..
T Consensus        81 ~YLi~Lg~~~~r~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~~Ff~a~~pqFi~~~~~~~~q~~~l~~~~~~~~~~  160 (205)
T PRK10520         81 AYLIWLGIQQWRAAGAIDLHTLASTQSRRKLFKRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYLVLGVTTVVVDII  160 (205)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998525667755456687666899999999925919999999998777189852499999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999996051389999999999999999999609
Q gi|254780982|r  160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      |+..|+..+++.+++++++|..|++||++|.+|+++|++++.|
T Consensus       161 ~~~~~a~~~~~~~~~l~~~~~~~~~nrv~g~~li~~g~~La~~  203 (205)
T PRK10520        161 VMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASA  203 (205)
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999998594999999999999999999999860


No 2  
>PRK10958 leucine export protein LeuE; Provisional
Probab=100.00  E-value=0  Score=267.17  Aligned_cols=201  Identities=20%  Similarity=0.284  Sum_probs=178.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH
Q ss_conf             99899999999999999489947999999998310288999999999776699999999777553-07478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~   79 (202)
                      ||+++++.|+...+.++++|||++++++++++++|+|++++.++|+.+|+.+|...+.+|++.+. ++|+.+.++||+|+
T Consensus         2 ~~~t~l~~F~~~~~~~~itPGP~~~~v~~~sl~~G~~~~l~~~~G~~~G~~i~~~~a~~Gl~aLl~~~p~~f~vlk~~Ga   81 (213)
T PRK10958          2 LGVTDLWTYLVGAIFIVLLPGPNSLYVLSTAAQRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGA   81 (213)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87789999999999997088576999999998858898999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHH
Q ss_conf             9999999997412467-----78710135678889999878986327425788786667652477333-99999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPFN-----DLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYI-LPQSLILSLTM  153 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~~-----~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~-~~~~~~l~~~~  153 (202)
                      +||+|+|+|++|++.+     +.+.++.+.++..+.|++|+++|++|||+++||++++|||++++.+. ..+...+..++
T Consensus        82 ~YLi~LGik~lrs~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~lFf~a~fpqFi~~~~~~~~~~~~~l~~~~  161 (213)
T PRK10958         82 AYLLYLGVKMLRAALRGWRARKAEAAASPAVDGGAPFRKALILSLTNPKAILFFVSFFVQFVDPNYAHPALSFLILATIL  161 (213)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999988740144554445567765567999999997249339999899766326888872899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999960-5138999999999999999999960
Q gi|254780982|r  154 VSVDAMVLMTFSLICSKLRTLFS-SSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      ..+.+.|+..+.+.+++.+++++ ++|..|++|+++|.+|+++|++++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~vfig~g~~LAT  210 (213)
T PRK10958        162 QLVSFCYLSFLIFSGAFLAQYFRRRKKLAAGGNSLVGLLFVGFAAKLAT  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999758799999999999999999999984


No 3  
>PRK10229 threonine efflux system; Provisional
Probab=100.00  E-value=0  Score=258.15  Aligned_cols=199  Identities=14%  Similarity=0.239  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Q ss_conf             899999999999999489947999999998310288999999999776699999999777553-0747888676899999
Q gi|254780982|r    3 LETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAW   81 (202)
Q Consensus         3 ~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~y   81 (202)
                      ++.|++++..++..+++|||++++++++++++|+|+++..++|+.+|+.+|...+.+|++.+. ++|+.+.++|++|+.|
T Consensus         2 l~~~l~~~l~~l~~~isPGPd~~lv~~~s~~~G~r~g~~~~~Gi~~G~~v~~~la~~Gl~~l~~~~~~~f~~ik~~Ga~Y   81 (206)
T PRK10229          2 LMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLIIEKMAWLHTIIMVGGGLY   81 (206)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999619866799999999885799899999999999999999999999999997599999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999974124677871----0135678889999878986327425788786667652477333999999999999999
Q gi|254780982|r   82 LIYSAWSAWYSPFNDLPL----GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD  157 (202)
Q Consensus        82 L~~lg~~~~~~~~~~~~~----~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~  157 (202)
                      |+|+|+|++|+..++.+.    .+.+.++..+.|++|+++|++|||+++||++++|||++++.+...+... .......+
T Consensus        82 L~yLG~~~lr~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~nllNPK~~lFf~a~f~qfi~~~~~~~~~~~~-~~~~~~~~  160 (206)
T PRK10229         82 LCWMGYQMLRGALKKEDVAAEEPQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAGARWGI-FALIIVET  160 (206)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHH
T ss_conf             99999999986423567654443435552668999999998008299999999988654898646899999-99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999996051389999999999999999999609
Q gi|254780982|r  158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      ..|+..++...++.+.+...+|..|++|+++|.+|+++|++++.|
T Consensus       161 ~~w~~~~~~~~s~~~~~~~~~r~~~~i~~~~G~~~i~~gi~L~~s  205 (206)
T PRK10229        161 LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIIS  205 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999996699999879889999999999999999999965


No 4  
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=257.05  Aligned_cols=202  Identities=27%  Similarity=0.496  Sum_probs=182.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH
Q ss_conf             998999999999999994899479999999983102889999999997766999999997775-5307478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~~~~~~~l~~~G~   79 (202)
                      |+++.++.++.+++...++|||+|++++++++++|+|+++..++|+.+||.+++.++.+|++. +.++|..+.++|++|+
T Consensus         1 m~~~~~l~~~~~~~~~~~~PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~~~~~l~~~Gl~all~~~~~~f~~lk~~Ga   80 (208)
T COG1280           1 MMLTNLLAFLLAALVLAATPGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGA   80 (208)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95899999999999996598916999999999857899999999999999999999999999999972999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHH
Q ss_conf             9999999997412467787101356788--89999878986327425788786667652477333-99999999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPFNDLPLGEIPLSSK--SKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYI-LPQSLILSLTMVSV  156 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~--~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~-~~~~~~l~~~~~~~  156 (202)
                      +||+|+|++++|++....++++.+.++.  ++.|++|+++|++|||+++||++++|||++++.+. ..+.+.+..++...
T Consensus        81 aYL~ylg~~~lra~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~~~  160 (208)
T COG1280          81 AYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILV  160 (208)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999998576645555444444541156999999998359199999999999981788842799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999996051389999999999999999999609
Q gi|254780982|r  157 DAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      .+.+...++..+.+.+++.++++..|++|+++|.+++++|++++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~  206 (208)
T COG1280         161 GFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALS  206 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999998444599999999999999999999851


No 5  
>pfam01810 LysE LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.
Probab=100.00  E-value=0  Score=257.28  Aligned_cols=188  Identities=18%  Similarity=0.341  Sum_probs=173.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999489947999999998310288999999999776699999999777553-0747888676899999999999974124
Q gi|254780982|r   15 IITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAWLIYSAWSAWYSP   93 (202)
Q Consensus        15 ~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~yL~~lg~~~~~~~   93 (202)
                      .++++|||+|++++++++++|+|++++.++|+.+||.+++.++.+|++.+. ++|+.+.++|++|+.||+|+|+++||++
T Consensus         2 ~l~~sPGP~~~~vi~~~~~~G~~~~~~~~~G~~~g~~~~~~l~~~Gl~~l~~~~~~~~~~l~~~G~~yL~ylg~~~~~~~   81 (191)
T pfam01810         2 SLALPPGPVNAFVLTQSIRRGFKHGLLVGLGAALGDAVLILLGLFGLAVLLGASPILFTVLKLGGGAYLLYLGILTLRAA   81 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             36755767899999999985879999999999999999999999999999986599999999999999999999999824


Q ss_pred             CCCCCC-CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             677871-0135678889999878986327425788786667652477333999999999999999999999999999999
Q gi|254780982|r   94 FNDLPL-GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLR  172 (202)
Q Consensus        94 ~~~~~~-~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  172 (202)
                      .++.++ ++.++++..+.|++|+.+|++|||+++||++++|+|++++++...+.+.+..++...++.|+..++..+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~G~~~~llNPK~~lf~~~~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  161 (191)
T pfam01810        82 WSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSVGGSFIGKNQYGGAQRIIFAAGLILASLIWFSFLAFLASRLA  161 (191)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56543333566754889999999998009699999999999970776650789999999999999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             996051389999999999999999999609
Q gi|254780982|r  173 TLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       173 ~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      ++++++|.+|++|+++|.+|+.+|++++-|
T Consensus       162 ~~~~~~~~~~~i~~~~g~~li~~gi~l~~S  191 (191)
T pfam01810       162 RRFKYKKLQRIINAIAGALLIGFGVYLLYS  191 (191)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             997086799999999999999999999849


No 6  
>PRK10323 neutral amino-acid efflux protein; Provisional
Probab=100.00  E-value=2.8e-45  Score=243.51  Aligned_cols=193  Identities=22%  Similarity=0.333  Sum_probs=174.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH
Q ss_conf             998999999999999994899479999999983102889999999997766999999997775-5307478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~~~~~~~l~~~G~   79 (202)
                      ||.+.+.++..+.++.++||||+|++++++|.++|+|++++..+|+.+|...+.+.+.+|... +..+|..+.++|++|+
T Consensus         1 M~~~ll~a~~~f~~v~siTPGPnnil~~~~g~~~G~r~tlp~~~Gi~~G~~~~~~l~~~gl~~l~~~~P~~~~~lk~~Ga   80 (195)
T PRK10323          1 MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGA   80 (195)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98899999999999996588769999999998568999999998898999999999999999999988899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999974124677871013567888999987898632742578878666765247733399999999999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM  159 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~  159 (202)
                      +||+|+|||++++++++.+++     +++..|++|+..|+.|||+|++.++.+++|+.++++...+...+..++..+...
T Consensus        81 ~YLlyLA~ki~~s~~~~~~~~-----~~~~~F~~g~~~Q~lNPKa~l~~~~~~s~F~~p~~~~~~~~~~~~~~~~~v~~~  155 (195)
T PRK10323         81 AYIVWLAWKIATSPTKEDGLQ-----PKPISFWASFALQFVNVKIILYGITALSTFVLPQTQALSWVVGVSVLLAMIGTF  155 (195)
T ss_pred             HHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999999971987655677-----687469999999973799999999999986287642499999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999960513899999999999999999996
Q gi|254780982|r  160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~  200 (202)
                      ....|+..|+.++|+++  |..|++|+++|.+++..++++.
T Consensus       156 ~~~~Wa~~G~~l~r~l~--~~~R~~N~~ma~lLv~~av~i~  194 (195)
T PRK10323        156 GNVCWALAGHLFQRLFR--QYGRQLNIVLALLLVYCAVRIF  194 (195)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999--8789999999999999999997


No 7  
>TIGR00949 2A76 Homoserine/Threonine efflux protein; InterPro: IPR004778 Proteins in this group include,  A chemotactic transduction protein from Pseudomonas aeruginosa. The homoserine/homoserine lactone efflux protein from Escherichia coli.  and a number of hypothetical proteins.; GO: 0016021 integral to membrane.
Probab=100.00  E-value=9.4e-44  Score=235.45  Aligned_cols=181  Identities=25%  Similarity=0.418  Sum_probs=161.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
Q ss_conf             8994799999999831028899999999977669999999977755-3074788867689999999999997412-----
Q gi|254780982|r   19 APGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYS-----   92 (202)
Q Consensus        19 ~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~yL~~lg~~~~~~-----   92 (202)
                      +||||.+.++++++++|+|.|...++|+.+||.+|+.++.+|++.+ .+.+..+..+||.|++||+|+|++++|.     
T Consensus         1 ~PGp~~~~V~~tsl~~G~~~g~~~~lG~~~G~a~~~~l~~lGla~li~~~~~LF~~ik~~G~aYL~ylG~~~~Rg~s~~~   80 (194)
T TIGR00949         1 SPGPNLFVVMQTSLSSGRRAGVLTILGIALGLAIWIVLALLGLAVLISKSVILFTVIKYLGGAYLIYLGVKMLRGKSMLK   80 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99875699999999862888878889999999999999999999999999999999999999999999999998788988


Q ss_pred             C--CCC--CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4--677--871013567888999987898632742578878666765247733399999999999999999999999999
Q gi|254780982|r   93 P--FND--LPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC  168 (202)
Q Consensus        93 ~--~~~--~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  168 (202)
                      +  .++  .+.+.+++.+..+.|++|+++|++|||+++||.|+||||++++.+...+...+.++.+..+.+|+..++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~F~~GlL~nL~NPK~vlff~siF~~~~~~~~~~~~~~~~~~~~i~v~~i~w~~~~~~~f  160 (194)
T TIGR00949        81 KSKLQSPAAQVELAESTTVKKSFRRGLLTNLSNPKAVLFFISIFSQFINPNTPITWQLIVLGLTIIVETILWFYVLSLIF  160 (194)
T ss_pred             HHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99863406556415530699999999987410068888877665541147502799999999999999999999999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf             999999605138999999999---9999999999
Q gi|254780982|r  169 SKLRTLFSSSKFVKIQNRVSA---VVFLLLALRI  199 (202)
Q Consensus       169 ~~~~~~~~~~~~~~~in~i~g---~~li~~ai~l  199 (202)
                      ++.+.+...+|.+|++|++.|   .++++||+.+
T Consensus       161 ~~~~~~~~y~~~~~~~~~~~GGvG~~f~~fG~~L  194 (194)
T TIGR00949       161 SRPAVRRKYSKLQKLIDGITGGVGALFVGFGIRL  194 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999756799999554317999999987519


No 8  
>COG1279 Lysine efflux permease [General function prediction only]
Probab=100.00  E-value=1.7e-32  Score=179.42  Aligned_cols=197  Identities=16%  Similarity=0.208  Sum_probs=172.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHH
Q ss_conf             989999999999999948994799999999831028899999999977669999999977755-3074788867689999
Q gi|254780982|r    2 TLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVA   80 (202)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~   80 (202)
                      .++.++..+..++.+.++-||+|.++++||+++  ++.++.++-..+.|.+.+.+..+|++.+ .++|+...++++.|+.
T Consensus         1 ~~~~~l~Gf~l~~~LI~pIGaQNaFVl~QGi~r--~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~   78 (202)
T COG1279           1 MMSAFLQGFLLGASLILPIGAQNAFVLNQGIRR--EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAA   78 (202)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             969999899999999985340359999988866--219999999999999999999988999998678999999999899


Q ss_pred             HHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999741246778710---135678889999878986327425788786667652477333999999999999999
Q gi|254780982|r   81 WLIYSAWSAWYSPFNDLPLG---EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD  157 (202)
Q Consensus        81 yL~~lg~~~~~~~~~~~~~~---~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~  157 (202)
                      ||+|+|+..||+++++.++.   +.++.+..+.....+.++++||+++++.+.+.+..-..  ....+.+.+.++....+
T Consensus        79 FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~~l~~alavT~LNPhvyLDtvvliGs~~~~--~~~~~k~~F~~Ga~~aS  156 (202)
T COG1279          79 FLLYYGLLALKSAPRGPSQLQVAEFTKLKLKKVLLFALAVTLLNPHVYLDTVVLIGSLAAQ--LSDEAKWFFALGAISAS  156 (202)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_conf             9999999999850666000454676622279999999999980721334467765121654--06521278999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999996051389999999999999999999609
Q gi|254780982|r  158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      +.|+...++.+..+++.+++||.+|++|+++|++|+..|+.+..+
T Consensus       157 ~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~  201 (202)
T COG1279         157 FLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ  201 (202)
T ss_pred             HHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999976110581999999999999999999999516


No 9  
>PRK09304 arginine exporter protein; Provisional
Probab=99.97  E-value=9.9e-30  Score=165.66  Aligned_cols=181  Identities=15%  Similarity=0.240  Sum_probs=155.3

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             948994799999999831028899999999977669999999977755-3074788867689999999999997412467
Q gi|254780982|r   17 TSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYSPFN   95 (202)
Q Consensus        17 ~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~   95 (202)
                      +++.||+|.++++||++  +++.+++++-....|.+.+....+|++.+ .++|+...++++.|+.||+|+|++.+|++.+
T Consensus         2 IiaIGaQNaFVl~QGl~--r~hv~~v~~ic~lsD~~LI~~Gv~G~g~l~~~~p~l~~~~~~~G~~fL~~yG~~~~rsa~~   79 (197)
T PRK09304          2 ILPLGPQNAFVMNQGIR--RQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMS   79 (197)
T ss_pred             EEEECCHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             23234137999998870--1339999999999999999999999999999678999999999999999999999999836


Q ss_pred             C---CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7---8710135678889999878986327425788786667652477333999999999999999999999999999999
Q gi|254780982|r   96 D---LPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLR  172 (202)
Q Consensus        96 ~---~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  172 (202)
                      .   .+..+.++.+..+...+.+.++++||++|++.+.+.+.+-..  ....+.+.+..+....++.|+...++.++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~i~~~lavT~LNPHvyLDTv~llGs~s~~--~~~~~k~~F~~Ga~~AS~iWF~~Lg~ga~~ls  157 (197)
T PRK09304         80 SNIELASAEVLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQ--LDVEPKRWFALGTISASFLWFFGLALLAAWLA  157 (197)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6633332233322289999999999971815888899997430034--78037899999999999999999999999989


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99605138999999999999999999960
Q gi|254780982|r  173 TLFSSSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       173 ~~~~~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      +++++||.+|++|.++|++|..+|++++-
T Consensus       158 ~~~~~p~~wr~id~~i~~iM~~~A~~L~~  186 (197)
T PRK09304        158 PRLRTAKAQRIINLVVGCVMWFIALQLAR  186 (197)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88688479999999999999999999999


No 10 
>TIGR00948 2a75 L-lysine exporter; InterPro: IPR004777 L-lysine exporter, LysE is an exporter, which: (i) structurally represents a new type of translocator; (ii) demonstrates that exporters are also present for primary metabolites such as amino acids; and (iii) serves in one physiological function to link import with export activity .; GO: 0016021 integral to membrane.
Probab=99.96  E-value=9.4e-28  Score=155.83  Aligned_cols=174  Identities=13%  Similarity=0.182  Sum_probs=147.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             94899479999999983102-88999999999776699999999777553-07478886768999999999999741246
Q gi|254780982|r   17 TSAPGPGNILTINHALQHGW-RPNKILILGQETAVFIIMLSITMGTKFLS-QLAYTMLIIKFLGVAWLIYSAWSAWYSPF   94 (202)
Q Consensus        17 ~~~PGP~~~~~i~~~~~~G~-~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~~~~~~~~l~~~G~~yL~~lg~~~~~~~~   94 (202)
                      .++-||+|.++++||+++.. ++.++.+.=..++|.+.+.+..+|.+.+. ++|....+++|.|++||+|+|+..+|++.
T Consensus         2 i~~iG~QN~Fv~~qGi~R~~iWr~l~~~~lC~~cD~~Li~~Gv~G~~~l~~~~P~~~~~~~~GG~lFL~~yg~~a~~~a~   81 (213)
T TIGR00948         2 ILPIGAQNAFVLRQGIRREYIWRVLLIVALCLICDLVLIAAGVFGVSALLAASPILLAVLTWGGVLFLLWYGLLALKTAW   81 (213)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             35610346999872232325899999999999998999999999899999744689999999889999999999998730


Q ss_pred             CC-----------CC--CCCC----------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             77-----------87--1013----------------------5678889999878986327425788786667652477
Q gi|254780982|r   95 ND-----------LP--LGEI----------------------PLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMN  139 (202)
Q Consensus        95 ~~-----------~~--~~~~----------------------~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~  139 (202)
                      ++           .+  .+|.                      ++....+.....+.++++||++|++.+.+++.+-+  
T Consensus        82 ~~kveaPqiiee~~~~~~~~~PlGGsavatdtrnrvrvevsvd~~~~~~k~~~~~l~vTlLNPhvYLDt~~liG~~~~--  159 (213)
T TIGR00948        82 RGKVEAPQIIEEPKALVPDEPPLGGSAVATDTRNRVRVEVSVDKKLGLKKVLAMTLAVTLLNPHVYLDTVVLIGALGL--  159 (213)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--
T ss_conf             144555213220033145677776401110132214677740663028999999999983367899999999976554--


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHH
Q ss_conf             33399999999999999999999999999999-999605138999999999999
Q gi|254780982|r  140 HYILPQSLILSLTMVSVDAMVLMTFSLICSKL-RTLFSSSKFVKIQNRVSAVVF  192 (202)
Q Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~in~i~g~~l  192 (202)
                      +....+.+.|.+++..+++.|+...++.+.++ ++.++++|.+|++|.+.+++|
T Consensus       160 q~~~~~r~~F~AGa~~AS~~WF~~La~~a~~lG~~~l~~~~~~~~~n~~va~vM  213 (213)
T TIGR00948       160 QFSDEERWLFAAGAIAASLVWFASLAFGAARLGSPLLASPKVWRIINLVVAVVM  213 (213)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             310024789999999999999999999999854400244779999989986359


No 11 
>pfam11139 DUF2910 Protein of unknown function (DUF2910). Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=99.28  E-value=8.1e-09  Score=61.56  Aligned_cols=190  Identities=10%  Similarity=0.031  Sum_probs=136.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C----CHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999489947999999998310288999999999776699999999777553-0----7478886768999999999
Q gi|254780982|r   11 IFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLS-Q----LAYTMLIIKFLGVAWLIYS   85 (202)
Q Consensus        11 ~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~-~----~~~~~~~l~~~G~~yL~~l   85 (202)
                      ......+++|-+.-..+.=-.-.+..+++..+..|...+.........++...+. .    .+.....+++.-+..++..
T Consensus         3 ~lal~~alsP~~i~~~vllL~~prp~~~~laFl~g~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~lvlGv~ll~~   82 (212)
T pfam11139         3 PLALGIALSPLRIGVAVLLLLRPRPVRRLLAFLAGWLLGYVAVGVVLLFVLHSLLLGLSHGPSRAVSWLQLVLGVALLLL   82 (212)
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             77898981939999999998489802666999999999999999999999743044345788616999999999999999


Q ss_pred             HHHHHHCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHH
Q ss_conf             999741246778710-----135678889999878986327425788786667652477333999999---999999999
Q gi|254780982|r   86 AWSAWYSPFNDLPLG-----EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI---LSLTMVSVD  157 (202)
Q Consensus        86 g~~~~~~~~~~~~~~-----~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~---l~~~~~~~~  157 (202)
                      |++.|+.++++.++.     ..+..+..+.+.-|+...+.|||..++|++........+.+...|...   +..+.....
T Consensus        83 a~~~~~~~~~~~~~~p~w~~~~~~~~~~~a~~lg~~l~l~~~~~~~~~laA~~~I~~sg~~~~~~~~al~~f~via~~~~  162 (212)
T pfam11139        83 GARIWLRRPARQSEPPRWMRRLDRLPLGGALGLGAVLGLLSPKPLLLYLAALAAIGASGLSPGTQLAALVVFNVVAVLPL  162 (212)
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99850358777767735776132158017999999999723761899999999998069968889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999960513899999----99999999999999609
Q gi|254780982|r  158 AMVLMTFSLICSKLRTLFSSSKFVKIQN----RVSAVVFLLLALRIVAN  202 (202)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in----~i~g~~li~~ai~l~~s  202 (202)
                      ..-...|....+|.++.+.  |.++|++    .+.+.++..+|.+++.+
T Consensus       163 ~ipll~~l~a~~r~~~~L~--~l~~Wl~~~~~~i~~~i~~v~G~~l~~~  209 (212)
T pfam11139       163 LIPLLAYLVAPERTQAALA--RLRDWLRAHGRLIVAVLLGVVGLLLLAQ  209 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999975587999999--9999999764249999999999999982


No 12 
>PRK11111 hypothetical protein; Provisional
Probab=99.00  E-value=2.3e-07  Score=54.38  Aligned_cols=194  Identities=11%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             998999999999999994899479999-9999831028899999999977669999999977755307478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILT-INHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~-i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~   79 (202)
                      ||++.++..+...+...=|+|-.-.+. +.++.+...|+.+..-... .+..+......+|-..+.-..--...+++.|+
T Consensus         5 md~~~fi~~fi~Lf~iinPig~~pifl~lt~~~~~~~r~~ia~~a~~-~a~~il~~f~~~G~~iL~~fGIsl~afrIaGG   83 (214)
T PRK11111          5 FDFSIYLKFFIGLFALVNPVGILPVFISMTSHQTAAERNKTNLTANF-SVAIILLISLFLGDFILNLFGISIDSFRIAGG   83 (214)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             70999999999999997520069999999679999999999999999-99999999999889999996998999999949


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999741246778710135678--8899--998789863274257887866676524773339999999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPFNDLPLGEIPLSS--KSKL--FVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVS  155 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~~~~~~~~~~~~~--~~~~--f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~  155 (202)
                      ..|...|+++.+.+.++.+.++.++++  ....  +.==..=-+.-|.++.-.+...     .+.+...+..........
T Consensus        84 iiL~~ial~Ml~g~~~~~~~~~~e~~~~~~~~~iaivPLAiPllaGPGaIttvi~~~-----~~~~~~~~~~~~~~ai~~  158 (214)
T PRK11111         84 ILVVSIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWG-----TRYHSWSNLLGFSVAIAL  158 (214)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH
T ss_conf             999999999864865665566221432112233210222454146858999999998-----645648899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999996051389999999999999999999609
Q gi|254780982|r  156 VDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      +....+.. -..++++.|++ +++-.+.++|++|.++...|+.+..|
T Consensus       159 ~~~~~~~~-l~~a~~i~r~L-G~~g~~vi~RlmGliL~aiaVq~i~~  203 (214)
T PRK11111        159 FALCCWGL-FRMAPWLVRLL-GQTGINVITRIMGLLLMALGIEFIVT  203 (214)
T ss_pred             HHHHHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999-99899999998-88899999999999999999999999


No 13 
>PRK10995 multiple drug resistance protein MarC; Provisional
Probab=98.86  E-value=2.4e-06  Score=49.23  Aligned_cols=196  Identities=10%  Similarity=0.129  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99899999999999999489-9--47999999998310288999999999776699999999777553074788867689
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAP-G--PGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFL   77 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~P-G--P~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~   77 (202)
                      ||+-+++......++..+.| |  |.+.. +.++.++..|+.+..-. ...+..+.......|-..+.-..--...+|+.
T Consensus         2 ~~~~~~~~~~~v~Lf~IinPig~~PiFls-lt~~~~~~~r~~ia~~a-~~~a~~iLl~f~~~G~~iL~~fGIsl~afrIa   79 (222)
T PRK10995          2 LDLFKAIGLGLVVLLPLANPLTTVALFLG-LSGNMTSEERNRQSLMA-SVYVFAIMMVAFYAGQLVMDTFGISIPGLRIA   79 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             78999999999999999671306999999-84899999999999999-99999999999998999999969989999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCC------CHH--HHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             9999999999974124677871013567------888--999987898-6327425788786667652477333999999
Q gi|254780982|r   78 GVAWLIYSAWSAWYSPFNDLPLGEIPLS------SKS--KLFVKGFIT-DITNGKAWAFFMAMVPAYLNMNHYILPQSLI  148 (202)
Q Consensus        78 G~~yL~~lg~~~~~~~~~~~~~~~~~~~------~~~--~~f~~G~~v-~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~  148 (202)
                      |+..|...|+++...+.+..+.++.+.+      +..  ..+. =+.+ -+.-|.++.--+....+. +.. ........
T Consensus        80 GGiiL~~ia~~Ml~~~~~~~~~~~~~~~~~~~~~~~~~~iaiv-PLAiPllaGPGaIatvi~l~~~~-~~~-~~~~~~~~  156 (222)
T PRK10995         80 GGLIVAFIGFRMLFPQQKAEDSPEAKSKSEELADEPSANIAFV-PLAMPSTAGPGTIAMIISSASTI-REG-STFADWVL  156 (222)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCCCCCCHHHHHHHHHHHHC-CCC-CCHHHHHH
T ss_conf             9999999999985355544334322345322111223430021-01142135846999999998623-543-20477999


Q ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999--9999999996051389999999999999999999609
Q gi|254780982|r  149 LSLTMVSVDAMVLMTFS--LICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       149 l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      ...........+...|.  ..+.++.|++ +++-.+.++|++|.++...|+.+..+
T Consensus       157 ~~~~~~~i~~~~~~~~~~l~~s~~i~r~L-G~~g~~vl~RimGllL~aiaVq~i~~  211 (222)
T PRK10995        157 MVAPPLIFLLVALILWGSLRSSGAIMRLL-GKGGIEAISRLMGFLLVCMGVQFIIN  211 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999769999998-88899999999999999999999999


No 14 
>pfam01914 MarC MarC family integral membrane protein. Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters.
Probab=98.58  E-value=1.5e-05  Score=45.29  Aligned_cols=190  Identities=13%  Similarity=0.143  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999489947999-999998310288999999999776699999999777553074788867689999999
Q gi|254780982|r    5 TWIHFLIFTLIITSAPGPGNIL-TINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLI   83 (202)
Q Consensus         5 ~~l~~~~~~~~~~~~PGP~~~~-~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~   83 (202)
                      .++..+...+...=|+|-.-.+ .+.++.+...|+.... -....+..+.......|-..+.-..--...+++.|+..|.
T Consensus         3 ~~l~~f~~Lf~iinPig~~pifl~lt~~~~~~~r~~ia~-~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~   81 (203)
T pfam01914         3 FIFSAFLSLFAIINPIGNVPVFISLTENYPAEERKRIIL-RASIIAFLILLLFLVFGKLILKLFGISIDAFRIAGGILLF   81 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             899999999999846347999999858999999999999-9999999999999999999999968879999998289999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999741246778710135678----88999987898632742578878666765247733399999999999999999
Q gi|254780982|r   84 YSAWSAWYSPFNDLPLGEIPLSS----KSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAM  159 (202)
Q Consensus        84 ~lg~~~~~~~~~~~~~~~~~~~~----~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~  159 (202)
                      ..|+++.+.+.++.+.++.+..+    ....+.==..=-+.-|-++.-.+....     +.+...+..........+...
T Consensus        82 ~ial~ml~~~~~~~~~~~~~~~~~~~~~~~aivPLaiPllaGPG~Ittvi~l~~-----~~~~~~~~~~~~~ai~~~~~~  156 (203)
T pfam01914        82 LIAIDMLFGKQSKEKTSKSEKEESEDIDEIAVVPLAIPLIAGPGAITTTMVLMA-----EHGTIGLKIAVILAILLAWLI  156 (203)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999658655333464433332222344100001310368389999999986-----558788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999996051389999999999999999999609
Q gi|254780982|r  160 VLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      . ...-..++++.|++ +++-.+.++|++|.++...|+.+..|
T Consensus       157 ~-~l~l~~s~~i~k~l-G~~g~~ii~Rl~GliL~aiavq~i~~  197 (203)
T pfam01914       157 T-FLILLSSSFIIRLL-GRTGINALTRIMGLLLAAIAVQMIVT  197 (203)
T ss_pred             H-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9-99999889999998-88999999999999999999999999


No 15 
>PRK10739 putative dITP- and XTP- hydrolase; Provisional
Probab=98.54  E-value=2.6e-05  Score=44.13  Aligned_cols=188  Identities=14%  Similarity=0.122  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             89999999999999948994799999-99983102889999999997766999999997775530747888676899999
Q gi|254780982|r    3 LETWIHFLIFTLIITSAPGPGNILTI-NHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAW   81 (202)
Q Consensus         3 ~~~~l~~~~~~~~~~~~PGP~~~~~i-~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~y   81 (202)
                      +++++......+...=|+|-.-.++- .++.+...|+-...- ....+..+......+|-..+.-..--...+|+.|+..
T Consensus         1 m~~li~~fi~LF~iinPig~~PiFlslt~~~~~~~r~~ia~~-a~~~a~~il~~F~~~G~~il~~fgIsi~afrIaGGil   79 (197)
T PRK10739          1 MNEIISATVLLILIMDPLGNLPIFMSVLKHLEPKRRRAIMIR-ELLIALLVMLVFLFAGEKILAFLNLRAETVSISGGII   79 (197)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             967999999999997621069999998479999999999999-9999999999999989999999499889999987899


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997412467787101356788899998789863274257887866676524773339999999999999999999
Q gi|254780982|r   82 LIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVL  161 (202)
Q Consensus        82 L~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~  161 (202)
                      |...|+++.....++.+.+..+.++.  .+.-=..=-+.-|-++.-.+...     .+....  ...............+
T Consensus        80 L~~ia~~Ml~~~~~~~~~~~~~~~~~--~ivPLAiPllaGPGaIttvi~l~-----~~~~~~--~~~~~~ai~~~~~~~~  150 (197)
T PRK10739         80 LFLIAIKMIFPSAEGNSSGLPAGEEP--FLVPLAIPLVAGPSILATLMLLS-----HQYPNQ--MGHLVIALLIAWGGTF  150 (197)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCC--EEEEECCCCCCCCHHHHHHHHHH-----HHCCHH--HHHHHHHHHHHHHHHH
T ss_conf             99999998626665665555655542--02300153225868999999998-----304224--7999999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999996051389999999999999999999609
Q gi|254780982|r  162 MTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      .. -..++++.|++ +++-.+.+.|++|.++...|+.+..|
T Consensus       151 ~~-l~~s~~i~r~l-G~~G~~ii~RlmGliLaaIavq~i~~  189 (197)
T PRK10739        151 VI-LLQSSLFLRLL-GEKGVNALERLMGLILVMMSTQMFLD  189 (197)
T ss_pred             HH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99-99989999997-98999999999999999999999999


No 16 
>pfam02683 DsbD Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.
Probab=98.52  E-value=3e-05  Score=43.82  Aligned_cols=160  Identities=10%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCHHH
Q ss_conf             88999999999776699999999777553074788867689999999999997412-------46778710135678889
Q gi|254780982|r   37 RPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYS-------PFNDLPLGEIPLSSKSK  109 (202)
Q Consensus        37 ~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~-------~~~~~~~~~~~~~~~~~  109 (202)
                      ++++..++|..+........+......+.   .....+.+..+..++.++..+...       ..+......+++++...
T Consensus        39 ~~~~~f~lG~~~~f~~lG~~~~~~g~~~~---~~~~~~~~~~g~~~il~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  115 (206)
T pfam02683        39 LKALLFVLGLSIVFLSLGYGAAFLGGLFR---DYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRLGHKKLKVEGPMLG  115 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99999999999999999999999999999---989999999999999999999999857776556666651266785067


Q ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99987898632-74257887866676524773339999999999999999999999999999999960513899999999
Q gi|254780982|r  110 LFVKGFITDIT-NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVS  188 (202)
Q Consensus       110 ~f~~G~~v~l~-NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~  188 (202)
                      .|..|+...+. -|=+-.+..++.+.-... ++.......+..-..... .-+...+...++.++..+.+|+.+++++++
T Consensus       116 ~Fl~G~~~~l~~~PC~~P~l~~iL~~aa~~-g~~~~g~~~l~~y~lG~~-lP~ll~~~~~~~l~~~~~~~~~~~~v~~v~  193 (206)
T pfam02683       116 AFLLGMLFALGWTPCIGPILASVLALAASS-GSLLLAALLLVVYVLGLG-IPFLLASLFAGSLLFLRWLRKNSRWIRIAS  193 (206)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999873545357999999999848-968999999999999999-999999999999987577789999999999


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999999960
Q gi|254780982|r  189 AVVFLLLALRIVA  201 (202)
Q Consensus       189 g~~li~~ai~l~~  201 (202)
                      |.+++..|+|++.
T Consensus       194 G~~li~~gi~~l~  206 (206)
T pfam02683       194 GVLLILIGILLLL  206 (206)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999979


No 17 
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=98.21  E-value=0.00019  Score=39.87  Aligned_cols=188  Identities=15%  Similarity=0.207  Sum_probs=92.6

Q ss_pred             CCHHHHHH-HHHHHHHHHHCCCHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99899999-9999999994899479-9999999831028-8999999999776699999999777553074788867689
Q gi|254780982|r    1 MTLETWIH-FLIFTLIITSAPGPGN-ILTINHALQHGWR-PNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFL   77 (202)
Q Consensus         1 M~~~~~l~-~~~~~~~~~~~PGP~~-~~~i~~~~~~G~~-~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~   77 (202)
                      |++...+. .+...+...=++|-.- +..+..+.+...| +-...  ....+-.+......+|-..+.-...-....+..
T Consensus         1 m~~~~~~~~~~i~Lf~i~dP~G~ipvf~slt~~~~~~~r~~v~~r--a~i~a~~ill~f~~~G~~il~~fgIsi~a~rIA   78 (203)
T COG2095           1 MDLLMFLLSAFILLFAIIDPIGNLPVFISLTKGLSPEERNRVALR--ASIIALLILLVFLLLGEGILRFFGISIDAFRIA   78 (203)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             961899999999999985778503879999768999999999999--999999999999999999999968866777874


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999741246778710-13567888999987898632742578878666765247733399999999999999
Q gi|254780982|r   78 GVAWLIYSAWSAWYSPFNDLPLG-EIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSV  156 (202)
Q Consensus        78 G~~yL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~  156 (202)
                      |+..|.+.|+++...+.++.+.+ |..+++ ...+.-=..=-+.-|.++.-......+    . +  .+......+..  
T Consensus        79 GGilLf~ia~~ml~~~~~~~~~~~e~~~~~-~iaivPLA~PliaGPg~Ist~i~~~~~----~-~--~~~~~~~~~i~--  148 (203)
T COG2095          79 GGILLFLIALRMLFGPTSRPKKKREEGQED-SIAIVPLAIPLIAGPGTIATVIVLSSQ----Y-G--NSKLAVVLAIL--  148 (203)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEECCCCCCCCCCHHHHHHHHHHHC----C-C--CCCHHHHHHHH--
T ss_conf             049899999999568767777786657657-802544657553475999999999813----5-7--44099999999--


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999--999999996051389999999999999999999609
Q gi|254780982|r  157 DAMVLMTFSL--ICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       157 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                       ..|..+|..  .+.++.|++ +++-.+.+.|++|+++..+|+.+..+
T Consensus       149 -~~~~~~~~~l~~s~~i~r~l-G~~G~~vl~RimGllL~al~vq~i~~  194 (203)
T COG2095         149 -LASLLTYLILLSSSRIMRLL-GKTGLNALTRIMGLLLAALGVQMILD  194 (203)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -99999999999889999997-78889999999999999999999999


No 18 
>TIGR00427 TIGR00427 conserved hypothetical protein TIGR00427; InterPro: IPR002771   Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. .
Probab=98.07  E-value=0.00038  Score=38.34  Aligned_cols=184  Identities=14%  Similarity=0.145  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             89999999999999948994--7999999998310288999999999776699999999777553074788867689999
Q gi|254780982|r    3 LETWIHFLIFTLIITSAPGP--GNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVA   80 (202)
Q Consensus         3 ~~~~l~~~~~~~~~~~~PGP--~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~   80 (202)
                      ++-|+..+...|...=|||-  .+....++=-+.-|.+--+-  .......+......+|-..+.-+.-..+.+|++|+.
T Consensus         7 l~f~~~~F~sLF~~~nP~G~~PiFi~LTe~y~~~~R~~i~kk--A~I~~~~IL~~f~~fG~~Il~~FGIsIdafriAGGI   84 (206)
T TIGR00427         7 LSFYIKVFISLFAIINPIGNVPIFISLTESYTAEEREKIAKK--AVISAFVILLIFLLFGDLILKYFGISIDAFRIAGGI   84 (206)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             015766877898885475502322114888877899999899--999999999999987457886608727898998899


Q ss_pred             HHHHHHHHHHHCCCCCCCCCC-CCC-CC-HHH---------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             999999997412467787101-356-78-889---------999878986327425788786667652477333999999
Q gi|254780982|r   81 WLIYSAWSAWYSPFNDLPLGE-IPL-SS-KSK---------LFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI  148 (202)
Q Consensus        81 yL~~lg~~~~~~~~~~~~~~~-~~~-~~-~~~---------~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~  148 (202)
                      .+.-.++.+.+.+..+.+..+ +|. ++ ...         -..+|       |-++.-.+...++    .++... ...
T Consensus        85 Llf~Ia~dml~gK~~~~~~~k~~E~~e~~~~dsI~v~PLA~PL~aG-------PGaIt~~mvl~~~----~~~I~~-k~~  152 (206)
T TIGR00427        85 LLFLIALDMLSGKESEKKKHKHDEKEESKEIDSIAVVPLALPLIAG-------PGAITATMVLIAK----ASDIGE-KFL  152 (206)
T ss_pred             HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCC-------CCHHHHHHHHHHH----CCHHHH-HHH
T ss_conf             9999999998402550452041347864465410222124542036-------5169999999970----330899-999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999999999996051389999999999999999999609
Q gi|254780982|r  149 LSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      ..+.......+++..+.....-.++.  ++.-.+.+-|++|++|...|+.++.+
T Consensus       153 V~l~Ial~~~~~~l~~~~~~~i~~~l--g~~Gin~~tRimGL~L~AiaV~~I~~  204 (206)
T TIGR00427       153 VVLAIALVLLITFLLFLYAAFIIRRL--GRTGINVITRIMGLLLAAIAVEFIVT  204 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999998768999886--23018899999999999988887515


No 19 
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.83  E-value=0.0011  Score=36.03  Aligned_cols=190  Identities=16%  Similarity=0.174  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHCCC-----HHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHCCHHH
Q ss_conf             999999999999994899-----47999999-9----9831028899999999977669999-999977--755307478
Q gi|254780982|r    4 ETWIHFLIFTLIITSAPG-----PGNILTIN-H----ALQHGWRPNKILILGQETAVFIIML-SITMGT--KFLSQLAYT   70 (202)
Q Consensus         4 ~~~l~~~~~~~~~~~~PG-----P~~~~~i~-~----~~~~G~~~~~~~~~G~~~g~~~~~~-~~~~g~--~~l~~~~~~   70 (202)
                      -.++.++..++.+..||-     |....++. +    +.++|+.-++..++|+++.+.+... ++..|.  +...++|++
T Consensus       172 ~~ll~ff~~GllL~lTPCV~PmiPIlssii~g~~~~~s~~r~~~lsl~Yvlgma~ty~~lG~~~~~~G~~~q~~lQ~P~v  251 (577)
T PRK00293        172 WSLLWFFLLGIGLAFTPCVLPMYPILSGIVLGGGQRLSTARAFLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV  251 (577)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             99999999989985387655658999998606678863146899999999999999999999999987789998734299


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-----CCCC---CCC--CCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC
Q ss_conf             886768999999999999741-----2467---787--101356788899998789863-27425788786667652477
Q gi|254780982|r   71 MLIIKFLGVAWLIYSAWSAWY-----SPFN---DLP--LGEIPLSSKSKLFVKGFITDI-TNGKAWAFFMAMVPAYLNMN  139 (202)
Q Consensus        71 ~~~l~~~G~~yL~~lg~~~~~-----~~~~---~~~--~~~~~~~~~~~~f~~G~~v~l-~NPka~~f~~~~~~~fi~~~  139 (202)
                      ...+    +..+..+|..++-     -+..   ..+  ..+.+..+....|..|++..+ .-|=.-....+..- ++...
T Consensus       252 l~~~----~~lfv~laLSmfG~fel~lP~~~~~~l~~~s~~~~gG~~~G~f~mG~lsaLv~sPC~~~PL~gaLl-yia~t  326 (577)
T PRK00293        252 LIGL----AILFVLLALSMFGLFTLQLPSSLQTRLNLMSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALL-YIAQS  326 (577)
T ss_pred             HHHH----HHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHCC
T ss_conf             9999----999999999986347742776777787765413578971529999999998854343287899999-99703


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33399999999999999999999999999999999605138999999999999999999960
Q gi|254780982|r  140 HYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      ++.......+.......... +...+....++  .-+...+...+.++.|.+|+..|+|++.
T Consensus       327 g~~~~G~~~Lf~lglGMglP-lllig~~~~~l--LPK~G~WM~~vK~vfGfllLa~AiwlL~  385 (577)
T PRK00293        327 GDLLLGGLTLYLLALGMGLP-LILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVFLLE  385 (577)
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75677899999999888769-99998506641--9998618999999999999999999999


No 20 
>PRK11469 hypothetical protein; Provisional
Probab=97.79  E-value=0.0013  Score=35.68  Aligned_cols=119  Identities=12%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             7478886768999999999999741246778710135---6788899998789863274257887866676524773339
Q gi|254780982|r   67 LAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIP---LSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYIL  143 (202)
Q Consensus        67 ~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~---~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~  143 (202)
                      .+.+..+=+|++...|.++|.+|++...++.++++.+   ..+.+..+..+..++       ++-+++-=++.-.+.+..
T Consensus        80 ~~~i~~~dhWiAf~LL~~IG~~MI~e~~~~~~~~~~~~~~~~~~~~Ll~lAiATS-------IDAlAVGvsla~l~~~i~  152 (206)
T PRK11469         80 SRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATS-------LDAMAVGVGLAFLQVNII  152 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHH
T ss_conf             9999876899999999999999999986566632113444676999999999986-------999999999998463099


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999605138999999999999999999960
Q gi|254780982|r  144 PQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      .....+..+    ++    ..+..+-.+.+++ .++..|+-+.+.|+++++.|++++.
T Consensus       153 ~~~lvIG~v----T~----~~s~~Gv~lG~~~-G~~~g~~Aei~GG~VLI~IGlkiL~  201 (206)
T PRK11469        153 ATALAIGCA----TL----IMSTLGMMVGRFI-GSIIGKKAEILGGLVLIGIGVQILW  201 (206)
T ss_pred             HHHHHHHHH----HH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999----99----9999999999998-8987019999999999999999999


No 21 
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66  E-value=0.0022  Score=34.55  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH
Q ss_conf             9999999999994899-----479999999983102889999999997766999999997775530-7478886768999
Q gi|254780982|r    6 WIHFLIFTLIITSAPG-----PGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQ-LAYTMLIIKFLGV   79 (202)
Q Consensus         6 ~l~~~~~~~~~~~~PG-----P~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~-~~~~~~~l~~~G~   79 (202)
                      ....+..+..-..+|=     |..+..+...-...+++......+-..|..........+...+.+ .+.....++++++
T Consensus        13 ~~~aflaGlls~lSPCilpllP~~l~~~~~~~~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~g   92 (220)
T COG0785          13 ILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGSLGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAG   92 (220)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998999818266888899999996100105688999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHCCC---CCCC---CCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             999999999741246---7787---1013567888999987898632-74257887866676524773339999999999
Q gi|254780982|r   80 AWLIYSAWSAWYSPF---NDLP---LGEIPLSSKSKLFVKGFITDIT-NGKAWAFFMAMVPAYLNMNHYILPQSLILSLT  152 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~---~~~~---~~~~~~~~~~~~f~~G~~v~l~-NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~  152 (202)
                      ..++-+|+.......   ...+   +.+.+..+....|.-|+...+. -|=.-..+.++...-.. .++ ..+...+...
T Consensus        93 i~li~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~-~~~-~~~g~~ll~~  170 (220)
T COG0785          93 ILLILLGLLFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCIGPILGSILALAAS-TGS-VVLGALLLAA  170 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHH
T ss_conf             99999999999986245665444535124676306788999999999855446799999999974-884-6899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999--960513899999999999999999996
Q gi|254780982|r  153 MVSVDAMVLMTFSLICSKLRT--LFSSSKFVKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~in~i~g~~li~~ai~l~  200 (202)
                      ....-..-+...+...++..+  ...-+|+.+.++++.|..++.+|++++
T Consensus       171 Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~ll  220 (220)
T COG0785         171 YALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLLL  220 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99998999999999999999988899999763999999999999999739


No 22 
>pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions.
Probab=96.89  E-value=0.018  Score=29.99  Aligned_cols=165  Identities=17%  Similarity=0.263  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             994799999999831--028899999999977669999999977755307478886768999999999999741246778
Q gi|254780982|r   20 PGPGNILTINHALQH--GWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDL   97 (202)
Q Consensus        20 PGP~~~~~i~~~~~~--G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~   97 (202)
                      -|-+|+.++....++  ...+--..-.|...+...=......+...+...|    .++++|+.||+|.+++.++...++.
T Consensus        10 Ls~DN~ivial~~~~lP~~~r~~al~~Gi~~A~v~R~i~i~~~~~ll~~~~----~l~~igg~~Li~~~~k~~~~~~~~~   85 (184)
T pfam03741        10 LSVDNAFVIALIFRKLPPEQQKKALFWGIIGALVLRIILILLGSALLELFD----WILLIGGAFLLYTAIKLLRENEEDD   85 (184)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             885499999999804899999999999999999999999999999999707----9999999999999999987323443


Q ss_pred             CCCCC------CCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             71013------5678889999878-9863274257887866676524773339999999999999999999999999999
Q gi|254780982|r   98 PLGEI------PLSSKSKLFVKGF-ITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSK  170 (202)
Q Consensus        98 ~~~~~------~~~~~~~~f~~G~-~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  170 (202)
                      +++..      +.++..+.|.... .+-+.+   ++|-+-=.+.-+...+    +.+.+ .+..   .......-+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~av~~I~~~D---lvFSlDSV~aa~g~t~----~~~ii-~~~~---i~si~~m~~~~~~  154 (184)
T pfam03741        86 EENKIVRELKKVLPVTSSSLWLAVIQIELAD---LVFSLDSVPAAVGITD----DPFIV-ITGN---IFAILGLRFLAFL  154 (184)
T ss_pred             CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----CHHHH-HHHH---HHHHHHHHHHHHH
T ss_conf             2002345443015654037999999999999---9987628999999813----55999-9999---9999999999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99996051389999999999999999999609
Q gi|254780982|r  171 LRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       171 ~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      +.+...   ..+.++......+...|+.|...
T Consensus       155 ~~~~i~---~~~~l~~~~~~~L~~ig~kLi~e  183 (184)
T pfam03741       155 LAKLIE---RFPYLKYLAAAILGFIGVKLLLE  183 (184)
T ss_pred             HHHHHH---HCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999---87699999999999999999608


No 23 
>COG1971 Predicted membrane protein [Function unknown]
Probab=96.48  E-value=0.037  Score=28.41  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999999998310288-9999999997766999999997775530747888676899999999999974124677871013
Q gi|254780982|r   24 NILTINHALQHGWRP-NKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEI  102 (202)
Q Consensus        24 ~~~~i~~~~~~G~~~-~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~  102 (202)
                      +..-+.+|++..+.+ --....+.+.|..-.+.-...-..-..-++....+=+|+|...|.++|.+++++..++++++..
T Consensus        18 Fav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~~~~~~~   97 (190)
T COG1971          18 FAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKNEEDEFV   97 (190)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             99999831564251089999999999999999999999999999999999999999999999999999998035431021


Q ss_pred             CC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             56--78---88999987898632742578878666765247733399999999999999999999999999999999605
Q gi|254780982|r  103 PL--SS---KSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSS  177 (202)
Q Consensus       103 ~~--~~---~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (202)
                      ++  ++   .......|+.+++-|- +.-.-.+.    .  +.+.......+..    .+......=...++++.+++  
T Consensus        98 ~~~~~~~~~~~~~~~laiatSidal-~vG~~~a~----l--gv~i~~~av~iG~----~T~il~~~G~~IG~~~g~~~--  164 (190)
T COG1971          98 DPAEKHDLNFKELILLAIATSIDAL-AVGVGLAF----L--GVNILLAAVAIGL----ITLILSALGAIIGRKLGKFL--  164 (190)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH----H--CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--
T ss_conf             3520010349999999999999888-87533997----4--2369999999999----99999999999999999887--


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             138999999999999999999960
Q gi|254780982|r  178 SKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       178 ~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                         -+.-+.+.|.+++++|.+++.
T Consensus       165 ---g~~ae~lgGiiLI~~G~~iL~  185 (190)
T COG1971         165 ---GKYAEILGGIILIGIGVKILL  185 (190)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---239999988999999999999


No 24 
>pfam05758 Ycf1 Ycf1. The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.
Probab=96.36  E-value=0.044  Score=28.03  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999994899479999999983-1028899999999977669999999977-7553074788867689999999999
Q gi|254780982|r    9 FLIFTLIITSAPGPGNILTINHALQ-HGWRPNKILILGQETAVFIIMLSITMGT-KFLSQLAYTMLIIKFLGVAWLIYSA   86 (202)
Q Consensus         9 ~~~~~~~~~~~PGP~~~~~i~~~~~-~G~~~~~~~~~G~~~g~~~~~~~~~~g~-~~l~~~~~~~~~l~~~G~~yL~~lg   86 (202)
                      ++-.++.-+.+.||+-+++++.-+- .|--..+....|-.+|-.+..+.++..= -..+--|....++-   .-||++-=
T Consensus         6 GLYYGFLTTfsIGPSylfllRa~vmeegtek~vsAttGfItGQL~mfiSIYYaPLhlaL~rPHtITvL~---lPYllf~f   82 (832)
T pfam05758         6 GLYYGFLTTFSIGPSYLFLLRARVLEEGTEKKVSATTGFITGQLIMFISIYYAPLYLALGRPHTITVLA---LPYLLFHF   82 (832)
T ss_pred             EHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHH
T ss_conf             728779887265458999999998625776626887307888999999998899999974553308999---99999999


Q ss_pred             HHHHHCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             99741246778-------7101356788899998789863274257887866676524
Q gi|254780982|r   87 WSAWYSPFNDL-------PLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLN  137 (202)
Q Consensus        87 ~~~~~~~~~~~-------~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~  137 (202)
                      +  |....+-.       +.+.-...+-...|..+++.|++||-  +.=.++++-.++
T Consensus        83 f--~~n~k~f~~~~s~~~~~nSmrn~~iq~vFLnnlIfQL~N~~--iLPss~LaRLvn  136 (832)
T pfam05758        83 F--WNNHKDFFDYGSSLTPRNSMRNLSIQCVFLNNLIFQLLNPF--ILPSSVLARLVN  136 (832)
T ss_pred             H--HCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCHH--HCCCHHHHHHHH
T ss_conf             7--40665556654455642000124589999998999970413--157689998776


No 25 
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205   This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=94.66  E-value=0.21  Score=24.68  Aligned_cols=167  Identities=20%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHH-HHHC-CHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC
Q ss_conf             9998310288-99999999977669-9999999777-5530-747888676899999999999----9741246778710
Q gi|254780982|r   29 NHALQHGWRP-NKILILGQETAVFI-IMLSITMGTK-FLSQ-LAYTMLIIKFLGVAWLIYSAW----SAWYSPFNDLPLG  100 (202)
Q Consensus        29 ~~~~~~G~~~-~~~~~~G~~~g~~~-~~~~~~~g~~-~l~~-~~~~~~~l~~~G~~yL~~lg~----~~~~~~~~~~~~~  100 (202)
                      .-|+.||-|+ -+++..-..++-.- ....+....+ .+.+ .|..  +-+.+|+..|+-+|.    +.+|.++...+.+
T Consensus        16 ~vG~~YGlrkIkip~~S~liIa~~S~l~~~~sM~~G~~L~~~lP~~--~~~~lG~~iL~~~G~~~~~~~~r~k~~~~~~~   93 (215)
T TIGR02840        16 GVGIAYGLRKIKIPFLSLLIIAVISGLFIFISMLLGKLLAKFLPPK--VTEILGAIILIAIGIWIIYNAFRPKKERKKRS   93 (215)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999975246531669999999999999999999999999746767--88899999999999999999860578887630


Q ss_pred             CCCCCCH---HHHHHHHHHHHHC-CC-------------HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HHHHHHH
Q ss_conf             1356788---8999987898632-74-------------25788786667652477-333999999999999-9999999
Q gi|254780982|r  101 EIPLSSK---SKLFVKGFITDIT-NG-------------KAWAFFMAMVPAYLNMN-HYILPQSLILSLTMV-SVDAMVL  161 (202)
Q Consensus       101 ~~~~~~~---~~~f~~G~~v~l~-NP-------------ka~~f~~~~~~~fi~~~-~~~~~~~~~l~~~~~-~~~~~~~  161 (202)
                      ++++.++   .+.=.=|.+++++ ||             |. .+++++.=. .|.- ........-+-.... ....+.-
T Consensus        94 ~~~~~~~vWr~~~~~lg~~~~IL~~P~~AD~D~SG~I~~kE-AllLG~ALs-LDafGaGiGAsl~G~~p~~~~~~~~~~S  171 (215)
T TIGR02840        94 SEKDLSKVWRFELKSLGIVIQILRNPEVADLDKSGNITGKE-ALLLGIALS-LDAFGAGIGASLLGLNPLATSILVAVMS  171 (215)
T ss_pred             CCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             01357610244650013556653377626777886200899-999999999-9999998999886117899999999999


Q ss_pred             HHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999605138-----9999999999999999999
Q gi|254780982|r  162 MTFSLICSKLRTLFSSSKF-----VKIQNRVSAVVFLLLALRI  199 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-----~~~in~i~g~~li~~ai~l  199 (202)
                      ......|.++.++..+.++     .|.=+.+.|++++..|++-
T Consensus       172 ~~fv~~G~~lG~~~~~~~~G~FT~~~~s~~l~G~~Li~lG~~~  214 (215)
T TIGR02840       172 FIFVSLGLKLGKKVSKVSIGKFTIKKFSTFLPGILLILLGVFR  214 (215)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999988678874045313587788664899999999973


No 26 
>pfam03596 Cad Cadmium resistance transporter.
Probab=94.01  E-value=0.019  Score=29.85  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHH
Q ss_conf             8899999999977669999999977755307478886768999999999999741246778710135---6788899998
Q gi|254780982|r   37 RPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIP---LSSKSKLFVK  113 (202)
Q Consensus        37 ~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~---~~~~~~~f~~  113 (202)
                      ++-....+|.-+|......++..+.-.+...|.-  ++.-+.+..-+++|++.+.....++++++.+   +++..+.+.+
T Consensus        23 ~~~~~IviGqylGf~~Lv~~Sl~~a~g~~~ip~~--wilGlLGliPi~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (192)
T pfam03596        23 KSHKHIYIGQYLGSVALVLVSLLFAFVLNLVPEK--WILGLLGLIPIYLGIKVLIKGDDDDEEEILELLNSGKNNSLFGT  100 (192)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEE
T ss_conf             9733888447877999999999999998747999--99998758999999999972766551344444202566770599


Q ss_pred             HHHHHHCC-CHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHH
Q ss_conf             78986327-42578878666-765247733399999999999999999999999999999999-6051389999999999
Q gi|254780982|r  114 GFITDITN-GKAWAFFMAMV-PAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTL-FSSSKFVKIQNRVSAV  190 (202)
Q Consensus       114 G~~v~l~N-Pka~~f~~~~~-~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~in~i~g~  190 (202)
                      =..+++.| -   -+-++++ |.|.+.   ...+..+...++.....    .|++.+.++.++ .-.+...|+=+.+...
T Consensus       101 Va~vTiAncG---gDNIgiYvPlFa~~---~~~~l~v~livF~ilv~----vwc~~a~~l~~~p~I~~~l~ryg~~l~p~  170 (192)
T pfam03596       101 VAIITFASCG---ADNIGIFVPYFTTL---SMNNLLVALIVFLIMIL----ILCFIGYRLASIPHVSETLEKYSRWIVAI  170 (192)
T ss_pred             EEEEEEECCC---CCEEEEEEEECCCC---CHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHCCCHHHH
T ss_conf             9999995157---85168975210478---77989999999999999----99999999944815999999834634767


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999960
Q gi|254780982|r  191 VFLLLALRIVA  201 (202)
Q Consensus       191 ~li~~ai~l~~  201 (202)
                      ++++.|++++.
T Consensus       171 VlIgLGi~Il~  181 (192)
T pfam03596       171 VYIGLGIYILV  181 (192)
T ss_pred             HHHHCCEEEEE
T ss_conf             70530557889


No 27 
>pfam01306 LacY_symp LacY proton/sugar symporter. This family is closely related to the sugar transporter family.
Probab=92.06  E-value=0.6  Score=22.39  Aligned_cols=20  Identities=15%  Similarity=0.301  Sum_probs=12.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHH
Q ss_conf             98789863274257887866
Q gi|254780982|r  112 VKGFITDITNGKAWAFFMAM  131 (202)
Q Consensus       112 ~~G~~v~l~NPka~~f~~~~  131 (202)
                      .+...--+-||+-|.|.+-+
T Consensus       210 ~~~~~~llk~~~~~~f~l~v  229 (413)
T pfam01306       210 LRLALELFRMPKFWVFVLYV  229 (413)
T ss_pred             HHHHHHHHCCHHHHHHHHHH
T ss_conf             77799996154799999999


No 28 
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.86  E-value=0.64  Score=22.26  Aligned_cols=187  Identities=12%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHH------HHH--HHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHH--HHHHCCHHHHH
Q ss_conf             99999999999948994799999------999--8310288999999999--77669999-999977--75530747888
Q gi|254780982|r    6 WIHFLIFTLIITSAPGPGNILTI------NHA--LQHGWRPNKILILGQE--TAVFIIML-SITMGT--KFLSQLAYTML   72 (202)
Q Consensus         6 ~l~~~~~~~~~~~~PGP~~~~~i------~~~--~~~G~~~~~~~~~G~~--~g~~~~~~-~~~~g~--~~l~~~~~~~~   72 (202)
                      ++.+++.++.+.++|=--=++-+      ..+  .++.|+.++.++.|..  +......+ ++..|+  +.-.++|++..
T Consensus       170 ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~vl~  249 (569)
T COG4232         170 LLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPWVLG  249 (569)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHH
T ss_conf             99999998998620376553899999995555555324666779999999999999999999855461267671568999


Q ss_pred             HHHHHHHHHHHHHHHHHH-----HCCCC-----CCCCCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             676899999999999974-----12467-----787101356788899998789863-2742578878666765247733
Q gi|254780982|r   73 IIKFLGVAWLIYSAWSAW-----YSPFN-----DLPLGEIPLSSKSKLFVKGFITDI-TNGKAWAFFMAMVPAYLNMNHY  141 (202)
Q Consensus        73 ~l~~~G~~yL~~lg~~~~-----~~~~~-----~~~~~~~~~~~~~~~f~~G~~v~l-~NPka~~f~~~~~~~fi~~~~~  141 (202)
                      .+.+    ....++..|+     +.+..     ...++..+..+....|..|.+.++ ..|=+-.+-.+.+.. +....+
T Consensus       250 ~la~----lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Y-iaqsg~  324 (569)
T COG4232         250 GLAA----LFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLY-IAQSGN  324 (569)
T ss_pred             HHHH----HHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHCCH
T ss_conf             9999----99999998511301047277766776540156788628999998889872476765127899999-985451


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             39999999999999999999999999999999960513899999999999999999996
Q gi|254780982|r  142 ILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~  200 (202)
                      ...+...+.+........+ ...+..+  .+..-+...++..+.++.|.+|...++|++
T Consensus       325 ~~~g~~~l~al~LGMg~Pl-llv~~f~--~~~LPk~G~WM~~vK~~fGFvlLa~aiwLl  380 (569)
T COG4232         325 ALLGGLALYALGLGMGLPL-LLIGVFG--NRLLPKPGPWMNTVKQAFGFVLLATAIWLL  380 (569)
T ss_pred             HHHHHHHHHHHHHHCCCCH-HHHEECC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8789999999987425532-2310024--323899973899999998799999999999


No 29 
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=91.03  E-value=0.79  Score=21.80  Aligned_cols=84  Identities=11%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-C-HHHHHHHHHHHHHHHH
Q ss_conf             999999999489947999999998--310288999999999776699999999-7775530-7-4788867689999999
Q gi|254780982|r    9 FLIFTLIITSAPGPGNILTINHAL--QHGWRPNKILILGQETAVFIIMLSITM-GTKFLSQ-L-AYTMLIIKFLGVAWLI   83 (202)
Q Consensus         9 ~~~~~~~~~~~PGP~~~~~i~~~~--~~G~~~~~~~~~G~~~g~~~~~~~~~~-g~~~l~~-~-~~~~~~l~~~G~~yL~   83 (202)
                      -+..+..-++.||=.-+++.+.=+  +...|+++...+...+.......+..+ +...-.. . +....+++++.+..++
T Consensus        20 AfllGalHAL~PGHGKt~maAylva~rgt~~qAvlLglaatlsHTavV~llal~~l~~~~~~~~e~~~pwL~~~S~~lI~   99 (278)
T PRK10019         20 AILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIII   99 (278)
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998997268982499999999936621999999999999999999999999999998651388899999999999999


Q ss_pred             ----HHHHHHHHC
Q ss_conf             ----999997412
Q gi|254780982|r   84 ----YSAWSAWYS   92 (202)
Q Consensus        84 ----~lg~~~~~~   92 (202)
                          |+-||.||.
T Consensus       100 ~iG~wmlwr~~r~  112 (278)
T PRK10019        100 STAFWMFWRTWRG  112 (278)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999977


No 30 
>COG2119 Predicted membrane protein [Function unknown]
Probab=89.38  E-value=1.1  Score=21.06  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             799999999831028899999999977669-9999999777553074788867689999999999997412467787101
Q gi|254780982|r   23 GNILTINHALQHGWRPNKILILGQETAVFI-IMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGE  101 (202)
Q Consensus        23 ~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~-~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~  101 (202)
                      ..+..+--+++++++   ++-.|+..+... +.+.+..|-...  ++.......|.++.-.+-+|+++++..+.+.++.+
T Consensus        20 T~lia~llA~r~~~~---~v~~g~~~a~~~m~~la~~vG~~~~--~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~~   94 (190)
T COG2119          20 TQLIAMLLAMRYRRW---PVFAGIAIALFAMHALAVLVGHAAA--SLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEAQ   94 (190)
T ss_pred             HHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999766880---0379999999999999999988875--14844579999999999999998066221311334


Q ss_pred             CCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3567888999987898632---7425788786667652477333999999999999999999999999999999996051
Q gi|254780982|r  102 IPLSSKSKLFVKGFITDIT---NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSS  178 (202)
Q Consensus       102 ~~~~~~~~~f~~G~~v~l~---NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (202)
                        ..+++..|.+.|..-..   --|.=+-.+++     +.+.+..  ..++.. ......++...-...+....+++   
T Consensus        95 --~~~~~~~f~~tfi~~FlaE~GDKTQiATIaL-----aA~~~~~--~~V~~G-t~lg~~l~s~laVl~G~~ia~ki---  161 (190)
T COG2119          95 --AASPRGVFVTTFITFFLAELGDKTQIATIAL-----AADYHSP--WAVFAG-TTLGMILASVLAVLLGKLIAGKL---  161 (190)
T ss_pred             --CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH-----HHCCCCC--EEEEHH-HHHHHHHHHHHHHHHHHHHHCCC---
T ss_conf             --4554048999999999999553889999999-----6037996--566163-48999999889999779987117---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3899999999999999999996
Q gi|254780982|r  179 KFVKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       179 ~~~~~in~i~g~~li~~ai~l~  200 (202)
                       -.|.+.++.|+++..+|+...
T Consensus       162 -~~r~l~~~aallFl~fal~~~  182 (190)
T COG2119         162 -PERLLRFIAALLFLIFALVLL  182 (190)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHH
T ss_conf             -889999999999999999999


No 31 
>TIGR00897 2A0118 polyol permease; InterPro: IPR004748   Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=88.66  E-value=1.3  Score=20.79  Aligned_cols=79  Identities=18%  Similarity=0.111  Sum_probs=57.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHH-------------HHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5678889999878986327425788-------------786667-65247733399999999999999999999999999
Q gi|254780982|r  103 PLSSKSKLFVKGFITDITNGKAWAF-------------FMAMVP-AYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLIC  168 (202)
Q Consensus       103 ~~~~~~~~f~~G~~v~l~NPka~~f-------------~~~~~~-~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  168 (202)
                      .++++.+...+++.+-..|||..+-             +.-++| .+++....+..+-+-.-.+........+..|...|
T Consensus       211 t~~ek~~EL~ka~TilftNp~vl~gg~vriIN~ig~fGFavflPmm~~a~~G~StseWLQiWg~~Ff~nIvfN~ifGivG  290 (411)
T TIGR00897       211 TTREKFEELGKAVTILFTNPKVLLGGVVRIINTIGLFGFAVFLPMMFLAELGFSTSEWLQIWGTLFFTNIVFNVIFGIVG  290 (411)
T ss_pred             CCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             66700677740000201078400002788776132213467635899976387402589999999999999999997541


Q ss_pred             HHHHHHHHCCHHHHHHH
Q ss_conf             99999960513899999
Q gi|254780982|r  169 SKLRTLFSSSKFVKIQN  185 (202)
Q Consensus       169 ~~~~~~~~~~~~~~~in  185 (202)
                      +|+.=+    +..+|+-
T Consensus       291 dKlGW~----~~V~WFG  303 (411)
T TIGR00897       291 DKLGWK----NTVIWFG  303 (411)
T ss_pred             CCCCCC----CEEEEEC
T ss_conf             446873----1667637


No 32 
>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=87.44  E-value=1.5  Score=20.38  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-H-HHHHHHHHHHHHHHH
Q ss_conf             999999999994899479999999983102889999999997766999999997775-5307-4-788867689999999
Q gi|254780982|r    7 IHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKF-LSQL-A-YTMLIIKFLGVAWLI   83 (202)
Q Consensus         7 l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~-l~~~-~-~~~~~l~~~G~~yL~   83 (202)
                      +.|...+.....+==|...++...+-.+.|-+....+--+.+- -+...  ....+. +.++ | ....+++-....-+.
T Consensus        94 laF~l~Glgv~a~~T~~lALlad~t~e~~R~~~v~i~w~Mli~-G~ivt--A~i~g~lL~~fs~~rLi~v~~~~a~i~~~  170 (402)
T pfam03209        94 LAFLLVGLGVHMSQTVGLALATDLADEEDRPKVVGLMYVMLLV-GIIVS--AITVGWLLADFSPARLIQVIQGVALATMV  170 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999996566275578999998538865669999999999999-99999--99999975646999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             9999974124677871013567888999987898632742578878666
Q gi|254780982|r   84 YSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMV  132 (202)
Q Consensus        84 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~  132 (202)
                      .--+..|+..+++.+..+.+ +++...|++..-.-+.||++-.|+.-++
T Consensus       171 l~~~A~wg~E~r~~~~~~~~-~~~~~~f~~a~~~~~~~p~ar~F~~fv~  218 (402)
T pfam03209       171 LNVIALWKQEARRPSRPREE-PRPEPSFLEAWLLFVAEPQARRFLFFLG  218 (402)
T ss_pred             HHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCEEHHHHHH
T ss_conf             99999835666775545677-7789659999999983987300277999


No 33 
>pfam02417 Chromate_transp Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.
Probab=83.41  E-value=2.5  Score=19.35  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH---HHHH
Q ss_conf             989999999999999948994799-99999983-102889999999997766999999997775530747888---6768
Q gi|254780982|r    2 TLETWIHFLIFTLIITSAPGPGNI-LTINHALQ-HGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTML---IIKF   76 (202)
Q Consensus         2 ~~~~~l~~~~~~~~~~~~PGP~~~-~~i~~~~~-~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~---~l~~   76 (202)
                      |-|++...   ....-.+|||... ...-.|.+ +|+..++...+|...--.+.+.........+.++|+...   -++.
T Consensus        39 t~~~F~~~---~alaq~~PGP~~~n~a~~iG~~~~G~~Ga~~a~~~~~lP~~l~~~~~~~~~~~~~~~~~~~~~l~gv~~  115 (169)
T pfam02417        39 TEEEFLDL---LALAQALPGPNAINLATFVGYRLAGFLGALVATLGFILPSFLLILLLAPLYKRFRDSPWVQAFLAGVKP  115 (169)
T ss_pred             CHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999---999980786499999999999983467899999999999999999999999998367899999987899


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999997412
Q gi|254780982|r   77 LGVAWLIYSAWSAWYS   92 (202)
Q Consensus        77 ~G~~yL~~lg~~~~~~   92 (202)
                      .-.+.++.-++++.|+
T Consensus       116 ~~vgli~~a~~~l~~~  131 (169)
T pfam02417       116 AVVGLILAAAIRLAKK  131 (169)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999998


No 34 
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=75.00  E-value=4.8  Score=17.92  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             89999999997766999999997775530747888676899999999999974124677871013567888999987898
Q gi|254780982|r   38 PNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFIT  117 (202)
Q Consensus        38 ~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v  117 (202)
                      .+++.-.++.+.-.+..+.+.+|...+...+....+.-.+-..|++|...+   +.... +....+..+....|..++..
T Consensus       126 ~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~---~~~~~-~~~~~~~~~~~~~fl~a~sl  201 (442)
T COG1457         126 TGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFR---SKGGL-DALWVKGPTSPLSFLSALSL  201 (442)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCC-CEEECCCCCCCHHHHHHHHH
T ss_conf             899677899999999999999829999999999999999999999999982---14664-42425689861249999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             632742578878666765247733
Q gi|254780982|r  118 DITNGKAWAFFMAMVPAYLNMNHY  141 (202)
Q Consensus       118 ~l~NPka~~f~~~~~~~fi~~~~~  141 (202)
                      ...+|-.|.-+.+=++.|.+..++
T Consensus       202 v~g~~~sw~~~~aDysRy~~~~t~  225 (442)
T COG1457         202 VIGSFASWGPYAADYSRYAPSPTP  225 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             999997611110102654578852


No 35 
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=74.45  E-value=4.9  Score=17.84  Aligned_cols=170  Identities=14%  Similarity=0.061  Sum_probs=86.8

Q ss_pred             CCHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf             99479-99999998310---2889999999997766999-99999777553074788867689999999999997412--
Q gi|254780982|r   20 PGPGN-ILTINHALQHG---WRPNKILILGQETAVFIIM-LSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYS--   92 (202)
Q Consensus        20 PGP~~-~~~i~~~~~~G---~~~~~~~~~G~~~g~~~~~-~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~--   92 (202)
                      =||.+ .+...+.-+..   ++..+..=.|-...+.+.- .....| ..+.++-..+.++.++-++.++++|.-..-.  
T Consensus        24 CGGi~~afs~~~~~~~~~~~~~~~~lyNlGRi~SYallG~i~G~lG-~~l~~~~~~~~~l~i~ag~~li~lGL~l~~~~~  102 (232)
T COG2836          24 CGGIVLAFSLLIPSKVSSSRLKLHLLYNLGRILSYALLGAILGALG-VSLGQSAGLRGVLFIIAGALLIALGLYLLARGG  102 (232)
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             3359999997544434088999999998607999999999999888-999878889999999999999999998854351


Q ss_pred             ---C-CCCCCC-----------CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ---4-677871-----------0135678889999878986327425788786667652477333999999999999999
Q gi|254780982|r   93 ---P-FNDLPL-----------GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD  157 (202)
Q Consensus        93 ---~-~~~~~~-----------~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~  157 (202)
                         . .+.+..           ...+.++.++.+.-|+.=.+. |=..++......  +.. ++. .+-......+-.-+
T Consensus       103 ~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~l-PCGlVYs~l~~A--~~t-gS~-~~Gal~mlaFGlGT  177 (232)
T COG2836         103 MWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLL-PCGLVYSALAYA--LST-GSA-FEGALVMLAFGLGT  177 (232)
T ss_pred             HHHHHHHCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH--HHC-CCH-HHHHHHHHHHHHCC
T ss_conf             5667763601005798763234304567630789999885356-548999999999--972-888-88799999986010


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999960513899999999999999999996
Q gi|254780982|r  158 AMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~  200 (202)
                      ...........+++++..     +|..||.++.++..++++.+
T Consensus       178 lP~ll~~G~~s~~~s~~~-----r~~~~rl~~gl~~v~g~~~l  215 (232)
T COG2836         178 LPNLLAMGIFSSKLSKSS-----RKRLNRLSGGLMVVVGLIGL  215 (232)
T ss_pred             CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             089999999999999999-----99999998599999999999


No 36 
>PRK09528 lacY galactoside permease; Reviewed
Probab=70.89  E-value=6.1  Score=17.40  Aligned_cols=19  Identities=16%  Similarity=0.247  Sum_probs=12.0

Q ss_pred             HHHHHHHCCCHHHHHHHHH
Q ss_conf             8789863274257887866
Q gi|254780982|r  113 KGFITDITNGKAWAFFMAM  131 (202)
Q Consensus       113 ~G~~v~l~NPka~~f~~~~  131 (202)
                      +...--+-||+-|.+.+.+
T Consensus       212 ~~~~~llk~~~~~~f~l~~  230 (418)
T PRK09528        212 KDALALFKLPKFWFLVLYV  230 (418)
T ss_pred             HHHHHHHCCCHHHHHHHHH
T ss_conf             9999983674999999999


No 37 
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.35  E-value=6.6  Score=17.22  Aligned_cols=192  Identities=13%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHH--CCHHHHHHHHHHHHH
Q ss_conf             999999999948994799999999831--0288999999999776--69999-9999777553--074788867689999
Q gi|254780982|r    8 HFLIFTLIITSAPGPGNILTINHALQH--GWRPNKILILGQETAV--FIIML-SITMGTKFLS--QLAYTMLIIKFLGVA   80 (202)
Q Consensus         8 ~~~~~~~~~~~~PGP~~~~~i~~~~~~--G~~~~~~~~~G~~~g~--~~~~~-~~~~g~~~l~--~~~~~~~~l~~~G~~   80 (202)
                      .-++.+.+-++-||-.-+.+.+.-+.+  ..|+++....-..+-.  ..+.+ ....++....  ........++..+..
T Consensus        60 ~SflyGvlHAlgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~  139 (303)
T COG2215          60 LSFLYGVLHALGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFL  139 (303)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999988604898546899999983542114879999999999886999999999999975466776515899999999


Q ss_pred             HHH----HHHHHHHHCC----CCC-----------------------CCCC---CC-CCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             999----9999974124----677-----------------------8710---13-56788899998789863274257
Q gi|254780982|r   81 WLI----YSAWSAWYSP----FND-----------------------LPLG---EI-PLSSKSKLFVKGFITDITNGKAW  125 (202)
Q Consensus        81 yL~----~lg~~~~~~~----~~~-----------------------~~~~---~~-~~~~~~~~f~~G~~v~l~NPka~  125 (202)
                      .++    |+-||.+|+.    ++.                       ....   +. +..+.+..+..++...+- |=.-
T Consensus       140 Lli~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l~~GLr-PCpg  218 (303)
T COG2215         140 LLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGLTGGLR-PCPG  218 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCC-CCCH
T ss_conf             999999999999998860257876300257786667765211355545689867723432289999999980676-6837


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             8878666765247733399999999999999999999999999999999605138-----99999999999999999996
Q gi|254780982|r  126 AFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKF-----VKIQNRVSAVVFLLLALRIV  200 (202)
Q Consensus       126 ~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~in~i~g~~li~~ai~l~  200 (202)
                      .-++-.+..-.+........++.+..+..+ ........+...+....+..+.|.     -+.+..+.|.+++.+|+..+
T Consensus       219 Ai~VLlfal~lgl~~~Gil~VlamS~Gtal-Tvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~gli~l~~g~~~l  297 (303)
T COG2215         219 AIFVLLFALSLGLYTLGILSVLAMSIGTAL-TVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLGGLIGLYFGLHLL  297 (303)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999945487789999999971799-9999999999999999998154177787889999999999999999999


Q ss_pred             C
Q ss_conf             0
Q gi|254780982|r  201 A  201 (202)
Q Consensus       201 ~  201 (202)
                      .
T Consensus       298 ~  298 (303)
T COG2215         298 L  298 (303)
T ss_pred             H
T ss_conf             8


No 38 
>TIGR00802 nico transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family; InterPro: IPR004688 This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterised members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.; GO: 0015099 nickel ion transmembrane transporter activity, 0015675 nickel ion transport, 0016021 integral to membrane.
Probab=65.35  E-value=8  Score=16.79  Aligned_cols=70  Identities=23%  Similarity=0.325  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHC-CHHHHHHHHHHH----HHHHHHHH-------
Q ss_conf             9999998310288---9999999997766999999997----775530-747888676899----99999999-------
Q gi|254780982|r   26 LTINHALQHGWRP---NKILILGQETAVFIIMLSITMG----TKFLSQ-LAYTMLIIKFLG----VAWLIYSA-------   86 (202)
Q Consensus        26 ~~i~~~~~~G~~~---~~~~~~G~~~g~~~~~~~~~~g----~~~l~~-~~~~~~~l~~~G----~~yL~~lg-------   86 (202)
                      .++|.=+++|+|.   |+.+.+|+.+-.+..++....|    ...+.+ .+....+=..+|    +.||.-+|       
T Consensus        23 nttRkLmq~G~~P~gvG~fFslGHStVVv~LA~~~~~Glk~~~~~~~~~~~~l~eiGgliGT~vSa~FL~~ia~LN~~iL  102 (290)
T TIGR00802        23 NTTRKLMQQGKRPLGVGFFFSLGHSTVVVVLATVLIAGLKVAVALLKERLDLLHEIGGLIGTLVSALFLLIIALLNLVIL  102 (290)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999762769711134546404108899999999987998426521575531224459999999999999999999999


Q ss_pred             ---HHHHHCCCC
Q ss_conf             ---997412467
Q gi|254780982|r   87 ---WSAWYSPFN   95 (202)
Q Consensus        87 ---~~~~~~~~~   95 (202)
                         ||.+|+..+
T Consensus       103 ~~l~r~Fr~~r~  114 (290)
T TIGR00802       103 RNLLRLFRKVRR  114 (290)
T ss_pred             HHHHHHHHHHHH
T ss_conf             979999888752


No 39 
>COG0730 Predicted permeases [General function prediction only]
Probab=64.66  E-value=8.3  Score=16.72  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999605138999999999999999999960
Q gi|254780982|r  165 SLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      +..+..+..+..++...+.+++..+.+++..+++++.
T Consensus       216 ~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~  252 (258)
T COG0730         216 SILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLL  252 (258)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999998679999999999999999999999


No 40 
>pfam02674 Colicin_V Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.
Probab=61.99  E-value=9.4  Score=16.45  Aligned_cols=23  Identities=26%  Similarity=0.143  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             47888676899999999999974
Q gi|254780982|r   68 AYTMLIIKFLGVAWLIYSAWSAW   90 (202)
Q Consensus        68 ~~~~~~l~~~G~~yL~~lg~~~~   90 (202)
                      +....++..+-.....|+..+..
T Consensus        56 ~~~~~~~a~~iifi~~~~i~~~i   78 (145)
T pfam02674        56 PALAAIIAFLLIFLLVLLIGSLL   78 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999


No 41 
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ; InterPro: IPR012651   Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation..
Probab=60.61  E-value=10  Score=16.32  Aligned_cols=142  Identities=14%  Similarity=0.119  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             47999999998310288999999999-77669999999977755307478886768999999999999741246778710
Q gi|254780982|r   22 PGNILTINHALQHGWRPNKILILGQE-TAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLG  100 (202)
Q Consensus        22 P~~~~~i~~~~~~G~~~~~~~~~G~~-~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~  100 (202)
                      |-.+...++|.+.|.-+|+...+=.. .|+..-  -..--.+.+.|++-.+..+-+.|          .+|++.|+.- +
T Consensus        40 PI~L~sfrrG~~~G~~~GLi~GlL~~i~G~ay~--~~l~~~Q~~ldY~laF~~~GlAG----------~F~~~~k~~~-~  106 (187)
T TIGR02357        40 PIVLISFRRGLKAGLVAGLIWGLLKIILGKAYK--NILHPVQVLLDYILAFAALGLAG----------VFASKVKKAL-K  106 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH-H
T ss_conf             999999975258998998999999999656512--40008899999878889998998----------8899999987-5


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             1356788899998789863274257887866--67652477333999999999999999-9999999999999999960
Q gi|254780982|r  101 EIPLSSKSKLFVKGFITDITNGKAWAFFMAM--VPAYLNMNHYILPQSLILSLTMVSVD-AMVLMTFSLICSKLRTLFS  176 (202)
Q Consensus       101 ~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~--~~~fi~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  176 (202)
                      .+++++....-.-|.++..+-=-.+.|+..+  ++++.+...+..--.+..=.+....+ ..+......+..+..+.+.
T Consensus       107 ~~~~~~~~~~~~lG~~~A~l~Ry~~HfiaGviFwG~YAPkG~s~~lYSl~~Ngss~~~~~l~~~ivL~ll~~~~~~~~~  185 (187)
T TIGR02357       107 SKTKKKALVAVILGVLVASLLRYFFHFIAGVIFWGSYAPKGMSAYLYSLIYNGSSALVEALICVIVLILLVKKAPQLFL  185 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             2125789999999999999999998786435301232888832999999999999999999999999999987787406


No 42 
>pfam10639 UPF0546 Uncharacterized protein family UPF0546. This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=56.83  E-value=12  Score=15.98  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=36.7

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             9987898632742578878666765247733399999999-----99999999999999999999999960513899999
Q gi|254780982|r  111 FVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILS-----LTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQN  185 (202)
Q Consensus       111 f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  185 (202)
                      +.+....-+.|||-++=++      +|+..+... ++.+.     .+........+..     ..+..+...++.... +
T Consensus        30 ~~~~~~~l~~n~~y~vPfl------lNqsGSv~f-~~lL~~~~lSlaVPi~NslaF~f-----T~i~~~~lgek~~~~-~   96 (112)
T pfam10639        30 FLLEFKFLFLRPKYLIPFL------LNQSGSVVF-FLLLGKTDLSLAVPIANSLAFVF-----TVLTGWLLGEKVLGR-K   96 (112)
T ss_pred             HHHHHHHHHCCHHHHHHHH------HHHHHHHHH-HHHHCCCCEEEEEECHHHHHHHH-----HHHHHHHHCCCCCCH-H
T ss_conf             9999999980869999999------970568999-99870577047500231799999-----999999963666745-7


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780982|r  186 RVSAVVFLLLALRI  199 (202)
Q Consensus       186 ~i~g~~li~~ai~l  199 (202)
                      ...|..++..|+.+
T Consensus        97 t~lG~~Lv~~Gi~L  110 (112)
T pfam10639        97 TWLGMGLVVAGTAL  110 (112)
T ss_pred             HHHHHHHHHHCCEE
T ss_conf             89999899805022


No 43 
>TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export..
Probab=49.45  E-value=16  Score=15.34  Aligned_cols=162  Identities=15%  Similarity=0.229  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----C
Q ss_conf             99999983102889999999997766999999997775530-747888676899999999999974124677871----0
Q gi|254780982|r   26 LTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQ-LAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPL----G  100 (202)
Q Consensus        26 ~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~-~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~----~  100 (202)
                      ++..++-.+-+++-=-.-.|.=+|..+.+....++...+.+ .|. +.++.++| ..=+|||++.|-....+.++    +
T Consensus        12 Ll~~f~~~Kt~~~~kdI~iGQYlG~~ili~vSLl~afgv~nliPe-kWvlGLLG-LiPiYLGik~~Ikge~ded~~a~l~   89 (196)
T TIGR00779        12 LLILFARAKTRKEVKDIYIGQYLGSIILILVSLLLAFGVVNLIPE-KWVLGLLG-LIPIYLGIKVFIKGEEDEDERAILS   89 (196)
T ss_pred             HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHH-HHHHHHCEEEEEECCCCCHHHHHHH
T ss_conf             999974220268733268833688999999999998888750641-47677764-5347423176774587613688887


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf             13567888999987898632742578878666-7652477333999999999999999999999999999999996----
Q gi|254780982|r  101 EIPLSSKSKLFVKGFITDITNGKAWAFFMAMV-PAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLF----  175 (202)
Q Consensus       101 ~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~-~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----  175 (202)
                      ..++.+..+.|.+=..+++.|--  .+-.+++ |-|....   ..+.++-..++...    -..|++.+.|+..+-    
T Consensus        90 l~~~GK~n~lfltvafit~asCg--aDnigiyvPyF~TLs---~~~l~~t~ivFlIm----v~~l~f~~yrLA~f~~isE  160 (196)
T TIGR00779        90 LLESGKLNKLFLTVAFITLASCG--ADNIGIYVPYFVTLS---MTELLVTLIVFLIM----VAVLCFVAYRLAAFDFISE  160 (196)
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC--CCCCEEECCCCHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCEE
T ss_conf             63148445666566543211367--564304516301545---99999999999999----9999999888742786302


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             05138999999999999999999960
Q gi|254780982|r  176 SSSKFVKIQNRVSAVVFLLLALRIVA  201 (202)
Q Consensus       176 ~~~~~~~~in~i~g~~li~~ai~l~~  201 (202)
                      .=+|+.||   +.+.++++.|++++.
T Consensus       161 ~~Eky~RW---I~pIvfIgLGiyI~~  183 (196)
T TIGR00779       161 TVEKYSRW---IVPIVFIGLGIYILI  183 (196)
T ss_pred             EEECCCCC---HHHHHHHHHCCEEEE
T ss_conf             55426750---045543310123667


No 44 
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=46.83  E-value=17  Score=15.12  Aligned_cols=16  Identities=19%  Similarity=0.289  Sum_probs=8.7

Q ss_pred             HHHHHCCCHHHHHHHH
Q ss_conf             8986327425788786
Q gi|254780982|r  115 FITDITNGKAWAFFMA  130 (202)
Q Consensus       115 ~~v~l~NPka~~f~~~  130 (202)
                      +.--+.||-.|.-.++
T Consensus       245 ~~YVL~Nk~iW~la~a  260 (448)
T COG2271         245 VKYVLKNKLIWLLALA  260 (448)
T ss_pred             HHHHHCCCHHHHHHHH
T ss_conf             9999728099999999


No 45 
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=41.66  E-value=21  Score=14.69  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCH
Q ss_conf             999999999999999960513
Q gi|254780982|r  159 MVLMTFSLICSKLRTLFSSSK  179 (202)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~  179 (202)
                      .....-.....++.++...++
T Consensus       250 ~~~~~gs~l~~~l~~r~g~~~  270 (392)
T PRK10473        250 GVSMTVSFSTPFALGIFKPRT  270 (392)
T ss_pred             HHHHHHHHHHHHHHHHHCHHH
T ss_conf             999999999999999957999


No 46 
>pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.
Probab=39.04  E-value=23  Score=14.47  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999996051389999999999999999999
Q gi|254780982|r  165 SLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRI  199 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l  199 (202)
                      .+.+.++.++.+    .+.++++..+++...|+++
T Consensus       206 ~~lG~~l~~ki~----~~~~r~~~~~~l~~~gi~m  236 (236)
T pfam01925       206 ALLGARLARRLP----PRLLRRLFAVLLLLVGLKL  236 (236)
T ss_pred             HHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHC
T ss_conf             999999998889----9999999999999999879


No 47 
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=35.80  E-value=27  Score=14.20  Aligned_cols=27  Identities=11%  Similarity=0.180  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             288999999999776699999999777
Q gi|254780982|r   36 WRPNKILILGQETAVFIIMLSITMGTK   62 (202)
Q Consensus        36 ~~~~~~~~~G~~~g~~~~~~~~~~g~~   62 (202)
                      .+.++.+++|.-+|..+-..+..++++
T Consensus        82 l~~Ai~vilGANIGTtvTa~iva~~l~  108 (533)
T COG1283          82 LKQAIGVILGANIGTTVTAWIVALDLS  108 (533)
T ss_pred             HHHHHHHEECCCHHHHHHHHHHHHHHH
T ss_conf             120244102353558999999998545


No 48 
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=35.38  E-value=27  Score=14.16  Aligned_cols=20  Identities=5%  Similarity=0.262  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHH
Q ss_conf             89999878986327425788
Q gi|254780982|r  108 SKLFVKGFITDITNGKAWAF  127 (202)
Q Consensus       108 ~~~f~~G~~v~l~NPka~~f  127 (202)
                      .+...+.+..-+.||+.+..
T Consensus       180 ~~~~~~~~~~~l~~~~~~~~  199 (377)
T PRK11102        180 LRTTIRNFASLFRHKRVLGY  199 (377)
T ss_pred             HHHHHHHHHHHHHCHHHHHH
T ss_conf             99999999999958689999


No 49 
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=33.65  E-value=29  Score=14.01  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=46.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf             99999948994799999999831----0288999999999776699999999777553074-788867689999999999
Q gi|254780982|r   12 FTLIITSAPGPGNILTINHALQH----GWRPNKILILGQETAVFIIMLSITMGTKFLSQLA-YTMLIIKFLGVAWLIYSA   86 (202)
Q Consensus        12 ~~~~~~~~PGP~~~~~i~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~-~~~~~l~~~G~~yL~~lg   86 (202)
                      .+..+=..-|-+|+.+++--.++    -++++...  |...+.+.=......+ +.+.+.+ +.+.+    .+.||+|.+
T Consensus        22 tl~~lE~vL~iDN~iviai~~~~Lp~~qr~kal~~--Gl~~A~v~R~~ll~~~-s~Ll~l~~~l~~~----fg~~L~~~~   94 (254)
T COG0861          22 TLILLEIVLGIDNAIVIAILASKLPPKQRKKALFI--GLAGALVLRIILLASI-SWLLTLTQPLLYI----FGLYLLWRD   94 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHH
T ss_conf             99999999872499999999823899998799999--9999999999999999-9999803899999----999999999


Q ss_pred             HHHHHCCCCC
Q ss_conf             9974124677
Q gi|254780982|r   87 WSAWYSPFND   96 (202)
Q Consensus        87 ~~~~~~~~~~   96 (202)
                      +++++.....
T Consensus        95 ~~ll~~~~~~  104 (254)
T COG0861          95 IKLLLGGLFL  104 (254)
T ss_pred             HHHHHCCHHH
T ss_conf             9997243037


No 50 
>PRK10062 hypothetical protein; Provisional
Probab=29.48  E-value=34  Score=13.64  Aligned_cols=123  Identities=14%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCCCC-------C
Q ss_conf             28899999999977669999999977755-30-7478886768999999999999741----2467787101-------3
Q gi|254780982|r   36 WRPNKILILGQETAVFIIMLSITMGTKFL-SQ-LAYTMLIIKFLGVAWLIYSAWSAWY----SPFNDLPLGE-------I  102 (202)
Q Consensus        36 ~~~~~~~~~G~~~g~~~~~~~~~~g~~~l-~~-~~~~~~~l~~~G~~yL~~lg~~~~~----~~~~~~~~~~-------~  102 (202)
                      ..+-+|++-.+.-|...==+ +..-.+++ .. .||....+-.+|+.||.|=|.+-.-    ....+.+..+       .
T Consensus        51 a~RELPvvw~IakGSl~NKl-IllP~ALllSaf~Pw~i~plLmlGG~yLcfEGaEKv~h~~~~~~~~~~~~~~~~~~~~~  129 (303)
T PRK10062         51 ANRELPVVWGVAKGSLINKV-ILVPLALIISAFIPWAITPLLMIGGAFLCFEGVEKVLHMLEARKHKEDPAQRQQRLEKL  129 (303)
T ss_pred             CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf             44421467999875265228-99989999999989999999996458967702999999973665534435565543124


Q ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------56788899998789863274257887866676524773339999999999999999999999999
Q gi|254780982|r  103 --------PLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLI  167 (202)
Q Consensus       103 --------~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  167 (202)
                              ++++-+...++-|+.+.     =+...++-   .-.+++...|...+..+.+.++...|...+..
T Consensus       130 ~~~d~~~~E~~kikgAIrTDfILSa-----EImvIaL~---~V~~~~~~~q~~vL~~Vai~iTv~VYG~ValI  194 (303)
T PRK10062        130 AAQDPLKFEKDKVKGAIRTDFILSA-----EIVAITLG---IVAEAPLLNQVLVLSGIALVVTVGVYGLVGVI  194 (303)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf             5455678899987637787478869-----99999850---13564199999999999999999998474137


No 51 
>KOG2881 consensus
Probab=28.33  E-value=36  Score=13.53  Aligned_cols=83  Identities=11%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             9999999999994--899479999-99998310288999999999776699-9999997775530747888676899999
Q gi|254780982|r    6 WIHFLIFTLIITS--APGPGNILT-INHALQHGWRPNKILILGQETAVFII-MLSITMGTKFLSQLAYTMLIIKFLGVAW   81 (202)
Q Consensus         6 ~l~~~~~~~~~~~--~PGP~~~~~-i~~~~~~G~~~~~~~~~G~~~g~~~~-~~~~~~g~~~l~~~~~~~~~l~~~G~~y   81 (202)
                      ++..+...+.+++  -.|--.+.+ .--+++|+|+.-+   .|...+-.+. ++.+.+|-+.-.-.|.  .+-.+++...
T Consensus        65 ~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf---~Ga~~AL~lMTiLS~~lG~aap~lipr--~~T~~~~t~L  139 (294)
T KOG2881          65 FLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVF---SGAMSALALMTILSVLLGWAAPNLIPR--KYTYYLATAL  139 (294)
T ss_pred             HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHH
T ss_conf             99999887651145201523899999998644306688---778999999999999987752220128--9999999999


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999974124
Q gi|254780982|r   82 LIYSAWSAWYSP   93 (202)
Q Consensus        82 L~~lg~~~~~~~   93 (202)
                      .+.+|+++.+..
T Consensus       140 F~iFGlkmL~eg  151 (294)
T KOG2881         140 FLIFGLKMLKEG  151 (294)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999989999877


No 52 
>pfam12263 DUF3611 Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.25  E-value=42  Score=13.23  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-C----HH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9947999999998310288999999--9997766999999997775530-7----47-8886768999999999999741
Q gi|254780982|r   20 PGPGNILTINHALQHGWRPNKILIL--GQETAVFIIMLSITMGTKFLSQ-L----AY-TMLIIKFLGVAWLIYSAWSAWY   91 (202)
Q Consensus        20 PGP~~~~~i~~~~~~G~~~~~~~~~--G~~~g~~~~~~~~~~g~~~l~~-~----~~-~~~~l~~~G~~yL~~lg~~~~~   91 (202)
                      |=|....-++++.+.--+-+++.-+  |.+.+-++......-+...-.+ .    +. .+....++-..+=+|.+|+.-|
T Consensus         2 ~~~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iLlF~~~~~~~~~~~~~~~g~~~gl~la~~glv~l~~Si~~~fry~r   81 (183)
T pfam12263         2 PVSPALERLARGLRLLGWIGFWIQLVLGVVSALILLFAVLFSGLVRSPDRNLGLGIGLFLTIIGLIALGFSIFFAFRYTR   81 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98889999999999989999999999999999999999997045678876666208999999999999999999988999


Q ss_pred             CCCCCC--CCCCCCCC-CHHHHHHHHHHHHHC
Q ss_conf             246778--71013567-888999987898632
Q gi|254780982|r   92 SPFNDL--PLGEIPLS-SKSKLFVKGFITDIT  120 (202)
Q Consensus        92 ~~~~~~--~~~~~~~~-~~~~~f~~G~~v~l~  120 (202)
                      -..+-.  +.+..|++ +-.+..+.|+.+|+.
T Consensus        82 lg~~L~~~~~~~rP~r~~~~r~lr~Gl~~nLv  113 (183)
T pfam12263        82 LGRRLRNPDPAKRPSRADTVRLLRLGLIINLL  113 (183)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99985558887899889999999999999999


No 53 
>pfam05631 DUF791 Protein of unknown function (DUF791). This family consists of several eukaryotic proteins of unknown function.
Probab=24.43  E-value=43  Score=13.15  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHH-------HH------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6788899998789863274257887-------86------6676524773339999999999999999999999999999
Q gi|254780982|r  104 LSSKSKLFVKGFITDITNGKAWAFF-------MA------MVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSK  170 (202)
Q Consensus       104 ~~~~~~~f~~G~~v~l~NPka~~f~-------~~------~~~~fi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  170 (202)
                      +++..+.+++|.-.-..|||.+.--       .+      +.++-+++.+...+    ++.++..........=...++.
T Consensus       226 ~~~~~~~~~~a~~~i~~d~~il~LG~iQSLFEgsMYiFVFlWTPaL~~~~~~iP----~GlIFs~FM~a~MlGSslf~~l  301 (354)
T pfam05631       226 KKDLKEQFKVAAQAIASDPNVFCLGLVQSLFEGSMYTFVFLWTPALSPNDEEIP----HGFIFATFMLASMLGSSVAARL  301 (354)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC----CEEHHHHHHHHHHHHHHHHHHH
T ss_conf             502678999999999728017999999999887687505564365389999999----5013998999999877999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             999960513899999999999999
Q gi|254780982|r  171 LRTLFSSSKFVKIQNRVSAVVFLL  194 (202)
Q Consensus       171 ~~~~~~~~~~~~~in~i~g~~li~  194 (202)
                      ..|..+.++..+.+-.+++..|..
T Consensus       302 ~~~~~~~e~~m~~v~~~~a~sl~~  325 (354)
T pfam05631       302 LQRHLRVESYMQIVFLLSAVCLSL  325 (354)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             870367899999999999999878


No 54 
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.59  E-value=45  Score=13.06  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999489-94799999999831028899999999977669999999977755307478886768999999999
Q gi|254780982|r    7 IHFLIFTLIITSAP-GPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYS   85 (202)
Q Consensus         7 l~~~~~~~~~~~~P-GP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~l   85 (202)
                      ++..++...+.+.| -|+.    +++.=++.-+.+--..|.+++|.++.   .||+            +.+.==..++.+
T Consensus        33 ~Ai~LmvALlSFnPSDPSW----SQTAWhepIhNlGG~~GAWlADTLFf---~FGv------------LAY~iP~im~~~   93 (1355)
T PRK10263         33 FAVWLMAALLSFNPSDPSW----SQTAWHEPIHNLGGMPGAWLADTLFF---IFGV------------MAYTIPVIIVGG   93 (1355)
T ss_pred             HHHHHHHHHHCCCCCCCCC----CCCCCCCHHHCCCCCHHHHHHHHHHH---HHHH------------HHHHHHHHHHHH
T ss_conf             9999999995268899884----33477862001576351899989999---9899------------998899999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99974124677871013567----8889999878986327425788786
Q gi|254780982|r   86 AWSAWYSPFNDLPLGEIPLS----SKSKLFVKGFITDITNGKAWAFFMA  130 (202)
Q Consensus        86 g~~~~~~~~~~~~~~~~~~~----~~~~~f~~G~~v~l~NPka~~f~~~  130 (202)
                      +|..||.+......+--.-.    .....+.+..-+.-+|.--+-+|.+
T Consensus        94 cW~~fR~r~~~~~iDyf~~slRLiG~LaLiLTSCGLAalN~DDi~YFaS  142 (1355)
T PRK10263         94 CWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFAS  142 (1355)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999986156766008999999999999999700465417411110257


No 55 
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=22.70  E-value=47  Score=12.97  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HH
Q ss_conf             9989999999999999948994799999-999831-028899999999977669999999977755307478886---76
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTI-NHALQH-GWRPNKILILGQETAVFIIMLSITMGTKFLSQLAYTMLI---IK   75 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i-~~~~~~-G~~~~~~~~~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~---l~   75 (202)
                      ||-|++...   ...-...|||+...+. -.|-+. |.+.++...++-+.-..+.+.....-...+.+.|....+   +|
T Consensus        43 is~~ef~~~---laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~~v~~~~~glk  119 (195)
T COG2059          43 ISEEEFADA---LAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLPLVKGILKGLK  119 (195)
T ss_pred             CCHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             899999999---99980389779999999999998555489999999998999999999999998275639999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             8999999999999741246
Q gi|254780982|r   76 FLGVAWLIYSAWSAWYSPF   94 (202)
Q Consensus        76 ~~G~~yL~~lg~~~~~~~~   94 (202)
                      ..-...++-..|++.|+..
T Consensus       120 ~~ii~lv~~~~~~l~~~~~  138 (195)
T COG2059         120 PAIIALVLQAVWRLGKKAL  138 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999861


No 56 
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.29  E-value=48  Score=12.92  Aligned_cols=55  Identities=16%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89999999997766999999997775--53074788867689999999999997412
Q gi|254780982|r   38 PNKILILGQETAVFIIMLSITMGTKF--LSQLAYTMLIIKFLGVAWLIYSAWSAWYS   92 (202)
Q Consensus        38 ~~~~~~~G~~~g~~~~~~~~~~g~~~--l~~~~~~~~~l~~~G~~yL~~lg~~~~~~   92 (202)
                      .....++-...|-++=.+.+.+...-  ....|....++..++...|.|+|++..-.
T Consensus        76 ~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k  132 (356)
T COG4956          76 LPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADK  132 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             689999998788999999999985377627960777689999999999973677640


No 57 
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=21.64  E-value=50  Score=12.85  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999960
Q gi|254780982|r  153 MVSVDAMVLMTFSLICSKLRTLFS  176 (202)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~  176 (202)
                      ....++..+..+.+...+.++.+.
T Consensus       230 y~vLDl~~kv~f~~~ll~~~~~~g  253 (285)
T COG5524         230 YGVLDLFAKVGFPFLLLRGARNFG  253 (285)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             103798988719999999998618


No 58 
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221   This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=21.61  E-value=8.6  Score=16.63  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             8999999999999994899479
Q gi|254780982|r    3 LETWIHFLIFTLIITSAPGPGN   24 (202)
Q Consensus         3 ~~~~l~~~~~~~~~~~~PGP~~   24 (202)
                      +|.+.+.....=.++++|||.+
T Consensus        45 ie~L~P~~~lfdaivisPGPC~   66 (212)
T TIGR00566        45 IEALLPLLPLFDAIVISPGPCT   66 (212)
T ss_pred             HHHHCCCCCCCCEEEECCCCCC
T ss_conf             8763113563345676586568


No 59 
>COG4280 Predicted membrane protein [Function unknown]
Probab=21.51  E-value=50  Score=12.84  Aligned_cols=85  Identities=13%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9989999999999999948994799999999831028899999999977669999-999977755307478886768999
Q gi|254780982|r    1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIML-SITMGTKFLSQLAYTMLIIKFLGV   79 (202)
Q Consensus         1 M~~~~~l~~~~~~~~~~~~PGP~~~~~i~~~~~~G~~~~~~~~~G~~~g~~~~~~-~~~~g~~~l~~~~~~~~~l~~~G~   79 (202)
                      |+++.+++-+...++=..--+   ..+...+-.++.|.++   .|...|..+... ...+|-. +.-.|  .+++++..+
T Consensus         1 Mnwsi~lAAl~sSlvElvEa~---aIa~avg~~~~wr~al---~ga~lglalvl~l~lvlGk~-L~lvP--ln~lqiv~g   71 (236)
T COG4280           1 MNWSIFLAALGSSLVELVEAG---AIAAAVGNIYKWRLAL---IGAVLGLALVLILTLVLGKL-LYLVP--LNYLQIVSG   71 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHCCC-EEEEE--CHHHHHHHH
T ss_conf             959999999998899999998---8987210120331788---99999999999999997564-03530--309999999


Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999999741246
Q gi|254780982|r   80 AWLIYSAWSAWYSPF   94 (202)
Q Consensus        80 ~yL~~lg~~~~~~~~   94 (202)
                      ..|+|+|+|-.|+..
T Consensus        72 vLLllFG~rw~Rsav   86 (236)
T COG4280          72 VLLLLFGYRWIRSAV   86 (236)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999789999999


No 60 
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase; InterPro: IPR006318   These sequences are a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport. ; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=21.36  E-value=50  Score=12.82  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHCCHHHH
Q ss_conf             899479999999983102889999-99999776699-999999777553074788
Q gi|254780982|r   19 APGPGNILTINHALQHGWRPNKIL-ILGQETAVFII-MLSITMGTKFLSQLAYTM   71 (202)
Q Consensus        19 ~PGP~~~~~i~~~~~~G~~~~~~~-~~G~~~g~~~~-~~~~~~g~~~l~~~~~~~   71 (202)
                      +|-|..+-++..=+..|...+.|+ +||...||=.. -++.++|+.-++-++...
T Consensus       486 ~~nPavLrLIk~V~~~~~~~g~wvg~CGEmAGD~~a~plLlGlGl~ElSm~A~si  540 (576)
T TIGR01417       486 PYNPAVLRLIKLVIDAAKQEGIWVGMCGEMAGDELAIPLLLGLGLRELSMSASSI  540 (576)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHCCCHHH
T ss_conf             7888999999999987875699647506650578999998504730211242137


No 61 
>pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
Probab=21.15  E-value=51  Score=12.80  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             99777553074788867689999999999997412467787101356788899998789863274257887866676524
Q gi|254780982|r   58 TMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLN  137 (202)
Q Consensus        58 ~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~v~l~NPka~~f~~~~~~~fi~  137 (202)
                      ..|+-.+-|-+.....+--+.+.-++-.|..  ....++.++++.++   .+.+++|+..-+..--.+..|..+ |+..+
T Consensus        87 L~Gv~~fgEW~t~~~~~~G~~Al~liiiG~~--lTs~~~~~~~~~~~---~~~~~kgi~~LlistiGY~~Y~v~-p~~~~  160 (268)
T pfam06800        87 LFGVLVFGEWSTSMQKILGFLALILIIIGIY--LTSLQDKKEAKVES---SKNLKKGIILLLISTIGYVGYVVL-PQLFK  160 (268)
T ss_pred             HHHHHEECCCCCHHHHHHHHHHHHHHHHHHH--EEEEECCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHH-HHHHC
T ss_conf             9987100446517899999999999997271--37631365556765---110552767886674136215454-88608


Q ss_pred             CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             77--333999999999999999999999999999999996051389999999999999999999609
Q gi|254780982|r  138 MN--HYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN  202 (202)
Q Consensus       138 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~i~g~~li~~ai~l~~s  202 (202)
                      .+  +...+|.+-+.....     .+   ..  .+ ++...  +...+.|.+.|+....-.+.++.|
T Consensus       161 ~~g~~~~lPQaiGm~iga~-----i~---~~--~~-~~~~~--~k~~~~nii~G~~w~ignl~~~~S  214 (268)
T pfam06800       161 VDGLSAILPQAIGMVIGAL-----IF---SL--KN-FKVFF--EKYTWLNIIPGLFWGIGNLFMLIS  214 (268)
T ss_pred             CCHHHEECHHHHHHHHHHH-----HH---HH--HC-CCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8733136177899999999-----99---98--45-54313--577999876569999999999862


No 62 
>TIGR02849 spore_III_AD stage III sporulation protein AD; InterPro: IPR014211   Members of this entry represent the uncharacterised protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. The operon is regulated by sigmaG . Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon..
Probab=20.22  E-value=53  Score=12.69  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             07478886768999999999999741246778
Q gi|254780982|r   66 QLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDL   97 (202)
Q Consensus        66 ~~~~~~~~l~~~G~~yL~~lg~~~~~~~~~~~   97 (202)
                      |.-+...++|++|-+|+.=+|=+.-|++..+.
T Consensus        38 ~~~Y~~tvLKIIGIAYiaeFGs~~c~DAG~~~   69 (101)
T TIGR02849        38 DSVYLETVLKIIGIAYIAEFGSQICKDAGEKA   69 (101)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             36899999999999999999999988634603


Done!