Query gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 202 No_of_seqs 115 out of 3554 Neff 8.3 Searched_HMMs 33803 Date Wed Jun 1 21:18:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780982.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1h2s_A Sensory rhodopsin II; 20.1 46 0.0014 12.7 9.5 28 150-177 194-221 (225) 2 >3ffr_A Phosphoserine aminotra 12.4 75 0.0022 11.6 2.1 21 18-38 8-28 (111) 3 >1jb0_L Photosystem 1 reaction 12.0 78 0.0023 11.6 7.6 87 44-130 12-101 (116) 4 >1rzh_L Reaction center protei 11.7 80 0.0024 11.5 3.1 79 57-135 44-128 (167) 5 >1xio_A Anabaena sensory rhodo 10.0 92 0.0027 11.2 12.1 23 153-175 202-224 (261) 6 >3ddl_A Xanthorhodopsin; carot 7.8 1.2E+02 0.0034 10.7 12.6 22 153-174 232-253 (273) 7 >2yuj_A Ubiquitin fusion degra 6.8 1.3E+02 0.0038 10.5 0.8 12 116-127 14-25 (75) 8 >3ixz_A Potassium-transporting 6.6 1.3E+02 0.0039 10.4 8.6 78 18-95 32-112 (140) 9 >2zxe_G FXYD10, phospholemman- 6.0 1.4E+02 0.0043 10.2 3.7 20 73-92 21-40 (74) 10 >1zc1_A Ubiquitin fusion degra 5.9 1.5E+02 0.0043 10.2 0.6 12 116-127 13-24 (87) No 1 >>1h2s_A Sensory rhodopsin II; membrane protein, menbrane protein complex, signal transduction; HET: BOG RET; 1.93A {Natronomonas pharaonis} (A:) Probab=20.09 E-value=46 Score=12.68 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999605 Q gi|254780982|r 150 SLTMVSVDAMVLMTFSLICSKLRTLFSS 177 (202) Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (202) .......+......+.....+.++...+ T Consensus 194 ~i~y~ilDv~~K~~Fg~~ll~~~~~~~~ 221 (225) T 1h2s_A 194 VALIVYLDLVTKVGFGFIALDAAATLRA 221 (225) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 8999999999999999999999972610 No 2 >>3ffr_A Phosphoserine aminotransferase SERC; YP_677612.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} (A:1-13,A:266-363) Probab=12.41 E-value=75 Score=11.63 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=10.6 Q ss_pred HCCCHHHHHHHHHHHHHHHHH Q ss_conf 489947999999998310288 Q gi|254780982|r 18 SAPGPGNILTINHALQHGWRP 38 (202) Q Consensus 18 ~~PGP~~~~~i~~~~~~G~~~ 38 (202) .+|||++..--.+....-.|+ T Consensus 8 ~~~~~~~~~~Rh~~~a~~lr~ 28 (111) T 3ffr_A 8 FTPGPSGIRKQTEEKAALINT 28 (111) T ss_dssp ECSSSCHHHHHHHHHHHHHHH T ss_pred ECCCCCHHHHHHHHHHHHHHH T ss_conf 017992589999999999999 No 3 >>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (L:39-154) Probab=12.01 E-value=78 Score=11.56 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=45.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 999977669999999977755307478886768999999999999741246---77871013567888999987898632 Q gi|254780982|r 44 LGQETAVFIIMLSITMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPF---NDLPLGEIPLSSKSKLFVKGFITDIT 120 (202) Q Consensus 44 ~G~~~g~~~~~~~~~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~---~~~~~~~~~~~~~~~~f~~G~~v~l~ 120 (202) +|++-|+.++-=.+.+|=--=.+....--.+.-+|...++-.+..++-... .+.+.++-..+..++.|..||++.-. T Consensus 12 iGmAHGYfL~GPf~~lGPLRnt~~a~laGllsaiglv~IlT~~Ls~Yg~~s~~~~~~~~d~l~t~~GW~~Ft~GF~iGg~ 91 (116) T 1jb0_L 12 VGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAM 91 (116) T ss_dssp HHHHHHHHHTHHHHHHSTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHHH T ss_pred HHHHCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 72320001556377617776736889989999999999999999996167778899982102270069887202132125 Q ss_pred CCHHHHHHHH Q ss_conf 7425788786 Q gi|254780982|r 121 NGKAWAFFMA 130 (202) Q Consensus 121 NPka~~f~~~ 130 (202) ---.+.+++. T Consensus 92 GGa~~Ay~Ll 101 (116) T 1jb0_L 92 GSAFVAFFLL 101 (116) T ss_dssp HHHHHHHHHH T ss_pred CHHHHHHHHH T ss_conf 2899999999 No 4 >>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (L:115-281) Probab=11.66 E-value=80 Score=11.50 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=46.3 Q ss_pred HHHHHH--HHHCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-H--HHHHHHCCCHHHHHHHH Q ss_conf 999777--553074-78886768999999999999741246778710135678889999-8--78986327425788786 Q gi|254780982|r 57 ITMGTK--FLSQLA-YTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFV-K--GFITDITNGKAWAFFMA 130 (202) Q Consensus 57 ~~~g~~--~l~~~~-~~~~~l~~~G~~yL~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~-~--G~~v~l~NPka~~f~~~ 130 (202) ..++.. -+..+| ....+--.+|+..+.-+-=....+..+..+++|.++......|. + |.-++..|-+-+.++++ T Consensus 44 ~~~~~~~~N~~ynPfHml~i~f~fg~al~~AmHG~~Vls~~~~g~~eE~~~~~~~~tffr~~ig~~~~~~~ih~l~~flA 123 (167) T 1rzh_L 44 SNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLSAANPEKGKEMRTPDHENTFFRDLVGYSIGTLGIHRLGLLLS 123 (167) T ss_dssp HHHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCCCCHHHHHHHHHHHHSBCCCHHHHHHHHHHHH T ss_pred HHHHHHHCEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEECCHHHCCCHHHHCEEECCCCCHHHHHHHHHH T ss_conf 77765613256676998889998622999986335377302789980505754412132111001036306699999999 Q ss_pred HHHHH Q ss_conf 66765 Q gi|254780982|r 131 MVPAY 135 (202) Q Consensus 131 ~~~~f 135 (202) +.|.+ T Consensus 124 ~~~~~ 128 (167) T 1rzh_L 124 LSAVF 128 (167) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 5 >>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} (A:) Probab=10.03 E-value=92 Score=11.20 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999996 Q gi|254780982|r 153 MVSVDAMVLMTFSLICSKLRTLF 175 (202) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~ 175 (202) +...+......+....-...+.. T Consensus 202 y~ilDi~~K~~Fg~~ll~~~~~~ 224 (261) T 1xio_A 202 FCLLPFFSKVGFSFLDLHGLRNL 224 (261) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999997741 No 6 >>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber} (A:) Probab=7.76 E-value=1.2e+02 Score=10.70 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780982|r 153 MVSVDAMVLMTFSLICSKLRTL 174 (202) Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (202) +...+......+.......+++ T Consensus 232 y~ilDi~aK~~fg~~l~~~~~~ 253 (273) T 3ddl_A 232 YTIADVLAKAGYGVLIYNIAKA 253 (273) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999999999999999998 No 7 >>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens} (A:116-190) Probab=6.80 E-value=1.3e+02 Score=10.45 Aligned_cols=12 Identities=50% Similarity=0.307 Sum_probs=8.7 Q ss_pred HHHHCCCHHHHH Q ss_conf 986327425788 Q gi|254780982|r 116 ITDITNGKAWAF 127 (202) Q Consensus 116 ~v~l~NPka~~f 127 (202) +.++.|||+++= T Consensus 14 F~~i~npkavLE 25 (75) T 2yuj_A 14 FLDITNPKAVLE 25 (75) T ss_dssp HHHSSCHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 535664899999 No 8 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:344-380,A:764-866) Probab=6.58 E-value=1.3e+02 Score=10.39 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=38.3 Q ss_pred HCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 489947999999998310288--9999999997766999999-9977755307478886768999999999999741246 Q gi|254780982|r 18 SAPGPGNILTINHALQHGWRP--NKILILGQETAVFIIMLSI-TMGTKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPF 94 (202) Q Consensus 18 ~~PGP~~~~~i~~~~~~G~~~--~~~~~~G~~~g~~~~~~~~-~~g~~~l~~~~~~~~~l~~~G~~yL~~lg~~~~~~~~ 94 (202) =+-|-.|+..+-.+++.||+- .++-.+...+...+..... ..+.-.-...|-.-.-+-|+....-..-++..-..++ T Consensus 32 etlG~vnFssIv~aI~eGR~i~~Nikk~i~~~Ls~ni~~vl~~l~~~i~~~~~pltp~qiL~inli~d~lpalaL~~e~~ 111 (140) T 3ixz_A 32 ETLGSTNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKA 111 (140) T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 88615888899999999999999999999999999999999999999983311368999999999999999998506888 Q ss_pred C Q ss_conf 7 Q gi|254780982|r 95 N 95 (202) Q Consensus 95 ~ 95 (202) . T Consensus 112 ~ 112 (140) T 3ixz_A 112 E 112 (140) T ss_pred C T ss_conf 8 No 9 >>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:) Probab=5.98 E-value=1.4e+02 Score=10.21 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 67689999999999997412 Q gi|254780982|r 73 IIKFLGVAWLIYSAWSAWYS 92 (202) Q Consensus 73 ~l~~~G~~yL~~lg~~~~~~ 92 (202) +-.++-+..|.-+|+-++.+ T Consensus 21 igGLi~A~vLfi~GI~iilS 40 (74) T 2zxe_G 21 VVGLIVAAVLCVIGIIILLA 40 (74) T ss_dssp HHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHC T ss_conf 20069999999999999993 No 10 >>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae} (A:122-208) Probab=5.94 E-value=1.5e+02 Score=10.20 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=8.3 Q ss_pred HHHHCCCHHHHH Q ss_conf 986327425788 Q gi|254780982|r 116 ITDITNGKAWAF 127 (202) Q Consensus 116 ~v~l~NPka~~f 127 (202) +.++.|||+++= T Consensus 13 F~~i~npKavLE 24 (87) T 1zc1_A 13 FLDISDPKAVLE 24 (87) T ss_dssp HHTSSCHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 446566899999 Done!