RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine
lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)



>gnl|CDD|31471 COG1280, RhtB, Putative threonine efflux protein [Amino acid
           transport and metabolism].
          Length = 208

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%)

Query: 1   MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMG 60
           M L   + FL+  L++ + PGP N+L +  +L  G R      LG      + ML   +G
Sbjct: 1   MMLTNLLAFLLAALVLAATPGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALG 60

Query: 61  TKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYSP--FNDLPLGEIPLSSKSKLFVKGFIT 117
              L +       ++K  G A+L+Y  W A  +            P SS+ K F +G + 
Sbjct: 61  LAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLV 120

Query: 118 DITNGKAWAFFMAMVPAYLNMNH-YILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFS 176
           ++ N KA  FF+A +P +++     +L Q+LIL L  + V  +VL  ++L+ ++LR L  
Sbjct: 121 NLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLR 180

Query: 177 SSKFVKIQNRVSAVVFLLLALRIV 200
             +  +I NR+  V+ +   +++ 
Sbjct: 181 RPRASRIINRLFGVLLIGFGVKLA 204


>gnl|CDD|110783 pfam01810, LysE, LysE type translocator.  This family consists of
           various hypothetical proteins and an l-lysine exporter
           LysE from Corynebacterium glutamicum which is proposed
           to be the first of a novel family of translocators. LysE
           exports l-lysine from the cell into the surrounding
           medium and is predicted to span the membrane six times.
           The physiological function of the exporter is to excrete
           excess l-Lysine as a result of natural flux imbalances
           or peptide hydrolysis; and also after artificial
           deregulation of l-Lysine biosynthesis as used by the
           biotechnology. industry for the production of l-lysine.
          Length = 191

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 2/187 (1%)

Query: 14  LIITSAPGPGNILTINHALQHGWRPNKILILGQETA-VFIIMLSITMGTKFLSQLAYTML 72
           L +   PGP N   +  +++ G++   ++ LG       +I+L +      L        
Sbjct: 1   LSLALPPGPVNAFVLTQSIRRGFKHGLLVGLGAALGDAVLILLGLFGLAVLLGASPILFT 60

Query: 73  IIKFLGVAWLIYSAWSAWYSPFNDLPL-GEIPLSSKSKLFVKGFITDITNGKAWAFFMAM 131
           ++K  G A+L+Y       + ++   L      +S  K F++G +  + N KA  F++++
Sbjct: 61  VLKLGGGAYLLYLGILTLRAAWSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSV 120

Query: 132 VPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVV 191
             +++  N Y   Q +I +  ++    +     + + S+L   F   K  +I N ++  +
Sbjct: 121 GGSFIGKNQYGGAQRIIFAAGLILASLIWFSFLAFLASRLARRFKYKKLQRIINAIAGAL 180

Query: 192 FLLLALR 198
            +   + 
Sbjct: 181 LIGFGVY 187


>gnl|CDD|31470 COG1279, COG1279, Lysine efflux permease [General function
           prediction only].
          Length = 202

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 3   LETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTK 62
           +  ++   +    +    G  N   +N  +        I +L   + + +I   +     
Sbjct: 2   MSAFLQGFLLGASLILPIGAQNAFVLNQGI-RREYVLPIALLCAISDIVLISAGVFGVGA 60

Query: 63  FLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNG 122
            +++  + +LI+++ G A+L+Y    A  S        ++   +K KL            
Sbjct: 61  LIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKL------------ 108

Query: 123 KAWAFFMAMVPAYLNMNHYI--------------LPQSLILSLTMVSVDAMVLMTFSLIC 168
                  A+    LN + Y+                     +L  +S   +     +L  
Sbjct: 109 -KKVLLFALAVTLLNPHVYLDTVVLIGSLAAQLSDEAKWFFALGAISASFLWFFLLALGA 167

Query: 169 SKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202
             L  L ++ K  +I N V AVV   LA+++   
Sbjct: 168 RWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,456,356
Number of extensions: 129731
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 45
Length of query: 202
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,340,536
Effective search space: 490480568
Effective search space used: 490480568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.9 bits)