RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] (202 letters) >gnl|CDD|31471 COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]. Length = 208 Score = 91.9 bits (228), Expect = 1e-19 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%) Query: 1 MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMG 60 M L + FL+ L++ + PGP N+L + +L G R LG + ML +G Sbjct: 1 MMLTNLLAFLLAALVLAATPGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALG 60 Query: 61 TKFL-SQLAYTMLIIKFLGVAWLIYSAWSAWYSP--FNDLPLGEIPLSSKSKLFVKGFIT 117 L + ++K G A+L+Y W A + P SS+ K F +G + Sbjct: 61 LAALLATSPALFTVLKLAGAAYLLYLGWKALRAGGAALAEEAAGAPSSSRRKAFRRGLLV 120 Query: 118 DITNGKAWAFFMAMVPAYLNMNH-YILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFS 176 ++ N KA FF+A +P +++ +L Q+LIL L + V +VL ++L+ ++LR L Sbjct: 121 NLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLR 180 Query: 177 SSKFVKIQNRVSAVVFLLLALRIV 200 + +I NR+ V+ + +++ Sbjct: 181 RPRASRIINRLFGVLLIGFGVKLA 204 >gnl|CDD|110783 pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine. Length = 191 Score = 66.2 bits (162), Expect = 6e-12 Identities = 35/187 (18%), Positives = 80/187 (42%), Gaps = 2/187 (1%) Query: 14 LIITSAPGPGNILTINHALQHGWRPNKILILGQETA-VFIIMLSITMGTKFLSQLAYTML 72 L + PGP N + +++ G++ ++ LG +I+L + L Sbjct: 1 LSLALPPGPVNAFVLTQSIRRGFKHGLLVGLGAALGDAVLILLGLFGLAVLLGASPILFT 60 Query: 73 IIKFLGVAWLIYSAWSAWYSPFNDLPL-GEIPLSSKSKLFVKGFITDITNGKAWAFFMAM 131 ++K G A+L+Y + ++ L +S K F++G + + N KA F++++ Sbjct: 61 VLKLGGGAYLLYLGILTLRAAWSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSV 120 Query: 132 VPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKFVKIQNRVSAVV 191 +++ N Y Q +I + ++ + + + S+L F K +I N ++ + Sbjct: 121 GGSFIGKNQYGGAQRIIFAAGLILASLIWFSFLAFLASRLARRFKYKKLQRIINAIAGAL 180 Query: 192 FLLLALR 198 + + Sbjct: 181 LIGFGVY 187 >gnl|CDD|31470 COG1279, COG1279, Lysine efflux permease [General function prediction only]. Length = 202 Score = 40.6 bits (95), Expect = 3e-04 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 28/214 (13%) Query: 3 LETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMGTK 62 + ++ + + G N +N + I +L + + +I + Sbjct: 2 MSAFLQGFLLGASLILPIGAQNAFVLNQGI-RREYVLPIALLCAISDIVLISAGVFGVGA 60 Query: 63 FLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNG 122 +++ + +LI+++ G A+L+Y A S ++ +K KL Sbjct: 61 LIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKL------------ 108 Query: 123 KAWAFFMAMVPAYLNMNHYI--------------LPQSLILSLTMVSVDAMVLMTFSLIC 168 A+ LN + Y+ +L +S + +L Sbjct: 109 -KKVLLFALAVTLLNPHVYLDTVVLIGSLAAQLSDEAKWFFALGAISASFLWFFLLALGA 167 Query: 169 SKLRTLFSSSKFVKIQNRVSAVVFLLLALRIVAN 202 L L ++ K +I N V AVV LA+++ Sbjct: 168 RWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.139 0.426 Gapped Lambda K H 0.267 0.0784 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,456,356 Number of extensions: 129731 Number of successful extensions: 465 Number of sequences better than 10.0: 1 Number of HSP's gapped: 460 Number of HSP's successfully gapped: 45 Length of query: 202 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 113 Effective length of database: 4,340,536 Effective search space: 490480568 Effective search space used: 490480568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (24.9 bits)