RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine
lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 38/204 (18%), Positives = 59/204 (28%), Gaps = 99/204 (48%)

Query: 64  LSQLAYTMLIIKFLG---------------------VAWLIYSA--WSAWYS-------- 92
           + QLA+ ++  K LG                      A  I     W +++         
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302

Query: 93  ------------PFNDLPL---------GE-IP---LSSKSKLFVKGFITDITNGKAWAF 127
                       P   LP           E +P   LS          I+++T       
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS----------ISNLT------- 345

Query: 128 FMAMVPAYLN-MNHYILPQSLILSLTMV-SVDAMVLM--TFSL--ICSKLRTL------- 174
               V  Y+N  N + LP    + +++V     +V+     SL  +   LR         
Sbjct: 346 -QEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403

Query: 175 -----FSSSKFVKIQNRVSAVVFL 193
                FS  K +K  NR     FL
Sbjct: 404 QSRIPFSERK-LKFSNR-----FL 421


>1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins
           with globular proteins, OB-fold, TIMP, cell adhesion;
           1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A
          Length = 131

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 95  NDLPLGEIPLSSKSKLFVKGF------ITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI 148
            D+   EI L   +K+ + GF         ++ G    FF+   P Y+   H      L+
Sbjct: 47  KDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAH---RNELM 103

Query: 149 LSLTMVSV 156
           L+ +++ +
Sbjct: 104 LNSSLMRI 111


>3g3l_A Putative uncharacterized membrane-associated protein; YP_211325.1,
           putative membrane-associated protein of unknown
           function; 2.20A {Bacteroides fragilis nctc 9343}
          Length = 327

 Score = 25.7 bits (56), Expect = 8.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 98  PLGEIPLSSKSKLFVKGFITDITNGK 123
            + +    +++K ++ G ITD T G+
Sbjct: 3   EVDQATKPAEAKYYIAGTITDATTGQ 28


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,646,873
Number of extensions: 68417
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 7
Length of query: 202
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 114
Effective length of database: 3,559,758
Effective search space: 405812412
Effective search space used: 405812412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.3 bits)