RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine
lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)



>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
           octamer-binding protein, NonO {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 86

 Score = 27.2 bits (60), Expect = 0.87
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 100 GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD-A 158
           GE   + +S+LFV     DIT  +    F     A     H       I   T    + A
Sbjct: 1   GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIA 60

Query: 159 MVLMTFSLICSK-LRTLFSSSK 179
            V +    +  K LR  F+   
Sbjct: 61  KVELDNMPLRGKQLRVRFACHS 82


>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
          {Pseudomonas putida [TaxId: 303]}
          Length = 115

 Score = 27.1 bits (59), Expect = 1.0
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 20 PGPGNILTINHALQHGWRPNKILILG 45
          P  G +++   AL     P  ++++G
Sbjct: 3  PLGGPVISSTEALAPKALPQHLVVVG 28


>d1jb3a_ b.40.3.2 (A:) The laminin-binding domain of agrin {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 127

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 95  NDLPLGEIPLSSKSKLFVKGF------ITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI 148
            D+   EI L   +K+ + GF         ++ G    FF+   P Y+   H      L+
Sbjct: 43  KDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAH---RNELM 99

Query: 149 LSLTMVSV 156
           L+ +++ +
Sbjct: 100 LNSSLMRI 107


>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 117

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 20 PGPGNILTINHALQHGWRPNKILILGQETAVFIIM 54
               IL    AL  G  P  ++++G       + 
Sbjct: 4  KFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELG 38


>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 284

 Score = 25.0 bits (54), Expect = 4.5
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 18/74 (24%)

Query: 92  SPFNDLPLG------------EIPLSSKSK------LFVKGFITDITNGKAWAFFMAMVP 133
           S F+D+PL             EIP  + +K        +   I D   GK          
Sbjct: 27  SAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPH 86

Query: 134 AYLNMNHYILPQSL 147
                N+   PQ+ 
Sbjct: 87  HGYIHNYGAFPQTW 100


>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase,
           catalytic domain {Alcaligenes faecalis [TaxId: 511]}
          Length = 358

 Score = 24.4 bits (52), Expect = 7.0
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 70  TMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFM 129
           TML    + +A      W   Y   +   L E              I        +    
Sbjct: 229 TMLKQDRVLLAGRTLITWCKPYPELSGRDLEE--------------IAAERGKSKYDVVP 274

Query: 130 AMVPA---YLNMNHYILPQSLILSLTMVSVDAM 159
            + PA   Y  M+   + + L    TM+  D +
Sbjct: 275 ELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGL 307


>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 173

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 11/29 (37%)

Query: 92  SPFNDLPLG-----------EIPLSSKSK 109
           +PF+DL  G           EIP  S++K
Sbjct: 1   NPFHDLEPGPDVPEVVYAIIEIPKGSRNK 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 719,354
Number of extensions: 30388
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 9
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)