RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] (202 letters) >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Score = 27.2 bits (60), Expect = 0.87 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 100 GEIPLSSKSKLFVKGFITDITNGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVD-A 158 GE + +S+LFV DIT + F A H I T + A Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIA 60 Query: 159 MVLMTFSLICSK-LRTLFSSSK 179 V + + K LR F+ Sbjct: 61 KVELDNMPLRGKQLRVRFACHS 82 >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 Score = 27.1 bits (59), Expect = 1.0 Identities = 6/26 (23%), Positives = 13/26 (50%) Query: 20 PGPGNILTINHALQHGWRPNKILILG 45 P G +++ AL P ++++G Sbjct: 3 PLGGPVISSTEALAPKALPQHLVVVG 28 >d1jb3a_ b.40.3.2 (A:) The laminin-binding domain of agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 127 Score = 27.2 bits (60), Expect = 1.1 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 95 NDLPLGEIPLSSKSKLFVKGF------ITDITNGKAWAFFMAMVPAYLNMNHYILPQSLI 148 D+ EI L +K+ + GF ++ G FF+ P Y+ H L+ Sbjct: 43 KDIVTHEILLDGGNKVVIGGFGDPLICDNQVSTGDTRIFFVNPAPQYMWPAH---RNELM 99 Query: 149 LSLTMVSV 156 L+ +++ + Sbjct: 100 LNSSLMRI 107 >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 Score = 25.9 bits (56), Expect = 2.4 Identities = 7/35 (20%), Positives = 12/35 (34%) Query: 20 PGPGNILTINHALQHGWRPNKILILGQETAVFIIM 54 IL AL G P ++++G + Sbjct: 4 KFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELG 38 >d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 284 Score = 25.0 bits (54), Expect = 4.5 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 18/74 (24%) Query: 92 SPFNDLPLG------------EIPLSSKSK------LFVKGFITDITNGKAWAFFMAMVP 133 S F+D+PL EIP + +K + I D GK Sbjct: 27 SAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPH 86 Query: 134 AYLNMNHYILPQSL 147 N+ PQ+ Sbjct: 87 HGYIHNYGAFPQTW 100 >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} Length = 358 Score = 24.4 bits (52), Expect = 7.0 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 17/93 (18%) Query: 70 TMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDITNGKAWAFFM 129 TML + +A W Y + L E I + Sbjct: 229 TMLKQDRVLLAGRTLITWCKPYPELSGRDLEE--------------IAAERGKSKYDVVP 274 Query: 130 AMVPA---YLNMNHYILPQSLILSLTMVSVDAM 159 + PA Y M+ + + L TM+ D + Sbjct: 275 ELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGL 307 >d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]} Length = 173 Score = 24.5 bits (53), Expect = 7.4 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 11/29 (37%) Query: 92 SPFNDLPLG-----------EIPLSSKSK 109 +PF+DL G EIP S++K Sbjct: 1 NPFHDLEPGPDVPEVVYAIIEIPKGSRNK 29 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.139 0.426 Gapped Lambda K H 0.267 0.0573 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 719,354 Number of extensions: 30388 Number of successful extensions: 120 Number of sequences better than 10.0: 1 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 9 Length of query: 202 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,295,466 Effective search space: 156751386 Effective search space used: 156751386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 51 (23.8 bits)