BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine
lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62]
         (202 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 202

 Score =  405 bits (1040), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMG 60
           MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMG
Sbjct: 1   MTLETWIHFLIFTLIITSAPGPGNILTINHALQHGWRPNKILILGQETAVFIIMLSITMG 60

Query: 61  TKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT 120
           TKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT
Sbjct: 61  TKFLSQLAYTMLIIKFLGVAWLIYSAWSAWYSPFNDLPLGEIPLSSKSKLFVKGFITDIT 120

Query: 121 NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKF 180
           NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKF
Sbjct: 121 NGKAWAFFMAMVPAYLNMNHYILPQSLILSLTMVSVDAMVLMTFSLICSKLRTLFSSSKF 180

Query: 181 VKIQNRVSAVVFLLLALRIVAN 202
           VKIQNRVSAVVFLLLALRIVAN
Sbjct: 181 VKIQNRVSAVVFLLLALRIVAN 202


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 23.9 bits (50), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 38  PNKILILGQETAVFIIMLS-----ITMGTKFLSQLAYTMLIIKFL 77
           P+K+L +GQ+  V II ++     I++G K L +  +  +  K++
Sbjct: 237 PSKVLSIGQQVKVKIIRINQETHRISLGMKQLEKNPWDDVQDKYV 281


>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 374

 Score = 23.1 bits (48), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 128 FMAMVPAYLNMNHYILPQSLILSLTMVS--VDAMVLMTFSLICSKLRTLFSSSKFVKIQN 185
           F   +P Y N  H ++P   I S   V+   DA + M   L  S+    F  S   KI  
Sbjct: 141 FCTFIPWYTNSRHIVMP---ITSSVKVNSQTDARLDMMIVLDVSRSMESFFDSSITKIDM 197

Query: 186 RVSAVVFLLLALRIVAN 202
            + ++  +L  ++++ +
Sbjct: 198 AIKSINAMLEEVKLIPD 214


>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 252

 Score = 22.3 bits (46), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 25 ILTINHALQ---HGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAY 69
          IL+I   L+     WR +K+  LG    VF ++ S+ +G   L ++ Y
Sbjct: 10 ILSIKRILKAILSRWRKSKLSALGS-VGVFFVIFSLPLGALGLYEVHY 56


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 21.6 bits (44), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 22  PGNILTINHALQHGWRPNKIL 42
           PG IL I+ +  +G+ PN ++
Sbjct: 308 PGAILAIDCSAIYGFAPNALI 328


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,527
Number of Sequences: 1233
Number of extensions: 4349
Number of successful extensions: 21
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 7
length of query: 202
length of database: 328,796
effective HSP length: 70
effective length of query: 132
effective length of database: 242,486
effective search space: 32008152
effective search space used: 32008152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 36 (18.5 bits)