Query         gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:10:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780983.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3hbk_A Putative glycosyl hydro  23.2      38  0.0016   15.4   2.2   20   30-49     81-100 (245)
  2 3imm_A Putative secreted glyco  15.9      65  0.0027   14.1   2.2   19   32-50     45-63  (201)
  3 1l0b_A BRCA1; TANDEM-BRCT, thr  15.9      30  0.0013   16.0   0.4   23   28-50    207-229 (229)
  4 3h3l_A Putative sugar hydrolas  13.4      76  0.0032   13.8   2.2   19   32-50     75-93  (241)
  5 3osd_A Putative glycosyl hydro   6.8 1.4E+02  0.0058   12.3   2.0   18   32-49     92-109 (265)
  6 3d1b_A RNA-induced transcripti   5.8      41  0.0017   15.3  -2.0   10   43-52      9-18  (124)
  7 1i9w_A Fusion protein E1; enve   5.6 1.6E+02  0.0067   12.0   0.9   20   29-53    196-215 (390)
  8 1z8y_A Spike glycoprotein E1;    5.5 1.6E+02  0.0069   11.9   1.0   20   29-53    196-215 (290)
  9 2hc5_A ORF 99, hypothetical pr   5.4 1.5E+02  0.0062   12.2   0.6   23   33-55     51-73  (117)
 10 3l4c_A Dedicator of cytokinesi   5.3 1.3E+02  0.0056   12.4   0.3    7   49-55     27-33  (220)

No 1  
>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503}
Probab=23.19  E-value=38  Score=15.38  Aligned_cols=20  Identities=15%  Similarity=0.448  Sum_probs=16.7

Q ss_pred             CCCCCCEEEEEEEECCCCCC
Q ss_conf             54324414578873367886
Q gi|254780983|r   30 PYSFKNYQARLEFSIPKDSN   49 (55)
Q Consensus        30 pysfknyqarlefsipkdsn   49 (55)
                      .-.|+||..|+||-++...|
T Consensus        81 ~~~y~nF~L~lE~k~~~~~N  100 (245)
T 3hbk_A           81 EGEYSAFEFSVDFKITEGAN  100 (245)
T ss_dssp             SSCBSSEEEEEEEEECTTCE
T ss_pred             CCCCCEEEEEEEEEECCCCC
T ss_conf             55332089999999789997


No 2  
>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase, structural genomics; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=15.92  E-value=65  Score=14.14  Aligned_cols=19  Identities=21%  Similarity=0.567  Sum_probs=16.0

Q ss_pred             CCCCEEEEEEEECCCCCCC
Q ss_conf             3244145788733678862
Q gi|254780983|r   32 SFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        32 sfknyqarlefsipkdsnd   50 (55)
                      .|.||..++||-++..+|-
T Consensus        45 ~y~dF~L~~e~k~~~~~NS   63 (201)
T 3imm_A           45 EYENFELDLDFKTDVGTNS   63 (201)
T ss_dssp             CBCSEEEEEEEEECTTCEE
T ss_pred             EEEEEEEEEEEEECCCCCC
T ss_conf             4503999999998999963


No 3  
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=15.88  E-value=30  Score=15.95  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=16.9

Q ss_pred             CCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             47543244145788733678862
Q gi|254780983|r   28 KNPYSFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        28 knpysfknyqarlefsipkdsnd   50 (55)
                      -++|-+.+.+.--+-|-|+||||
T Consensus       207 ~~~Y~i~~~~~~~~~s~~~~~~~  229 (229)
T 1l0b_A          207 LDAYLVQNITCGRDGSEPQDSND  229 (229)
T ss_dssp             GGGGBCC----------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             51354788644557889899998


No 4  
>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503}
Probab=13.41  E-value=76  Score=13.75  Aligned_cols=19  Identities=37%  Similarity=0.646  Sum_probs=16.0

Q ss_pred             CCCCEEEEEEEECCCCCCC
Q ss_conf             3244145788733678862
Q gi|254780983|r   32 SFKNYQARLEFSIPKDSND   50 (55)
Q Consensus        32 sfknyqarlefsipkdsnd   50 (55)
                      .|+||.-++||-++..+|.
T Consensus        75 ~y~dF~L~~E~k~~~~~NS   93 (241)
T 3h3l_A           75 KFKNFVFEIEWKIDKAGNS   93 (241)
T ss_dssp             CBSSEEEEEEEEECBTCEE
T ss_pred             EECCEEEEEEEEECCCCCC
T ss_conf             7455699999997667888


No 5  
>3osd_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.80A {Bacteroides thetaiotaomicron} PDB: 3nmb_A
Probab=6.82  E-value=1.4e+02  Score=12.33  Aligned_cols=18  Identities=33%  Similarity=0.763  Sum_probs=15.3

Q ss_pred             CCCCEEEEEEEECCCCCC
Q ss_conf             324414578873367886
Q gi|254780983|r   32 SFKNYQARLEFSIPKDSN   49 (55)
Q Consensus        32 sfknyqarlefsipkdsn   49 (55)
                      .|.||.-|+||-++...|
T Consensus        92 ~y~dF~L~lE~k~~~~~N  109 (265)
T 3osd_A           92 KFKNFELEMEWKVSKGGN  109 (265)
T ss_dssp             EESSEEEEEEEEECTTCE
T ss_pred             EEEEEEEEEEEEECCCCC
T ss_conf             102599999999668998


No 6  
>3d1b_A RNA-induced transcriptional silencing complex protein TAS3; all alpha motif, RITS complex, immunoglobulin fold, cell cycle; 1.70A {Schizosaccharomyces pombe} PDB: 3d1d_A
Probab=5.82  E-value=41  Score=15.25  Aligned_cols=10  Identities=60%  Similarity=1.009  Sum_probs=3.6

Q ss_pred             ECCCCCCCEE
Q ss_conf             3367886236
Q gi|254780983|r   43 SIPKDSNDLY   52 (55)
Q Consensus        43 sipkdsndly   52 (55)
                      |...|.||||
T Consensus         9 slttdkndl~   18 (124)
T 3d1b_A            9 SLTTDKNDLY   18 (124)
T ss_dssp             ----CHHHHH
T ss_pred             CCCCCCCHHH
T ss_conf             3355551389


No 7  
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=5.63  E-value=1.6e+02  Score=12.00  Aligned_cols=20  Identities=45%  Similarity=0.690  Sum_probs=13.4

Q ss_pred             CCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf             7543244145788733678862368
Q gi|254780983|r   29 NPYSFKNYQARLEFSIPKDSNDLYI   53 (55)
Q Consensus        29 npysfknyqarlefsipkdsndlyi   53 (55)
                      .|-.|-.-|+|-     -+|||||-
T Consensus       196 ~pG~FGDIQart-----~~s~DlyA  215 (390)
T 1i9w_A          196 QPGRFGDIQSRT-----VESNDLYA  215 (390)
T ss_pred             CCCCCCCCCCCC-----CCCCCEEE
T ss_conf             986654424045-----88432250


No 8  
>1z8y_A Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus}
Probab=5.53  E-value=1.6e+02  Score=11.91  Aligned_cols=20  Identities=35%  Similarity=0.398  Sum_probs=14.2

Q ss_pred             CCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf             7543244145788733678862368
Q gi|254780983|r   29 NPYSFKNYQARLEFSIPKDSNDLYI   53 (55)
Q Consensus        29 npysfknyqarlefsipkdsndlyi   53 (55)
                      .|-.|-.-|+|-     -+|+|||-
T Consensus       196 ~pG~FGDIQsrt-----~~s~DlyA  215 (290)
T 1z8y_A          196 KPGAFGDIQATS-----LTSKDLIA  215 (290)
T ss_dssp             CTTSTTSEEBSS-----SSCSCCEE
T ss_pred             CCCCCCCCCCCC-----CCCCCEEC
T ss_conf             986644433035-----77211140


No 9  
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=5.36  E-value=1.5e+02  Score=12.18  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             CCCEEEEEEEECCCCCCCEEEEC
Q ss_conf             24414578873367886236869
Q gi|254780983|r   33 FKNYQARLEFSIPKDSNDLYIKL   55 (55)
Q Consensus        33 fknyqarlefsipkdsndlyikl   55 (55)
                      .......|.|++-.+++..+++.
T Consensus        51 l~~~~~~L~F~ide~~~~~vVkV   73 (117)
T 2hc5_A           51 LEPSQVHLKFELHDKLNEYYVKV   73 (117)
T ss_dssp             HTTSSCCEEEEEEEETTEEEEEE
T ss_pred             HHHCCCEEEEEEECCCCCEEEEE
T ss_conf             98539704999966889899999


No 10 
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=5.28  E-value=1.3e+02  Score=12.44  Aligned_cols=7  Identities=57%  Similarity=1.251  Sum_probs=0.0

Q ss_pred             CCEEEEC
Q ss_conf             6236869
Q gi|254780983|r   49 NDLYIKL   55 (55)
Q Consensus        49 ndlyikl   55 (55)
                      |||||.|
T Consensus        27 NDlYitl   33 (220)
T 3l4c_A           27 NDIYVTL   33 (220)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
T ss_conf             2089983


Done!