Query gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 55 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:10:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780983.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3hbk_A Putative glycosyl hydro 23.2 38 0.0016 15.4 2.2 20 30-49 81-100 (245) 2 3imm_A Putative secreted glyco 15.9 65 0.0027 14.1 2.2 19 32-50 45-63 (201) 3 1l0b_A BRCA1; TANDEM-BRCT, thr 15.9 30 0.0013 16.0 0.4 23 28-50 207-229 (229) 4 3h3l_A Putative sugar hydrolas 13.4 76 0.0032 13.8 2.2 19 32-50 75-93 (241) 5 3osd_A Putative glycosyl hydro 6.8 1.4E+02 0.0058 12.3 2.0 18 32-49 92-109 (265) 6 3d1b_A RNA-induced transcripti 5.8 41 0.0017 15.3 -2.0 10 43-52 9-18 (124) 7 1i9w_A Fusion protein E1; enve 5.6 1.6E+02 0.0067 12.0 0.9 20 29-53 196-215 (390) 8 1z8y_A Spike glycoprotein E1; 5.5 1.6E+02 0.0069 11.9 1.0 20 29-53 196-215 (290) 9 2hc5_A ORF 99, hypothetical pr 5.4 1.5E+02 0.0062 12.2 0.6 23 33-55 51-73 (117) 10 3l4c_A Dedicator of cytokinesi 5.3 1.3E+02 0.0056 12.4 0.3 7 49-55 27-33 (220) No 1 >3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503} Probab=23.19 E-value=38 Score=15.38 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=16.7 Q ss_pred CCCCCCEEEEEEEECCCCCC Q ss_conf 54324414578873367886 Q gi|254780983|r 30 PYSFKNYQARLEFSIPKDSN 49 (55) Q Consensus 30 pysfknyqarlefsipkdsn 49 (55) .-.|+||..|+||-++...| T Consensus 81 ~~~y~nF~L~lE~k~~~~~N 100 (245) T 3hbk_A 81 EGEYSAFEFSVDFKITEGAN 100 (245) T ss_dssp SSCBSSEEEEEEEEECTTCE T ss_pred CCCCCEEEEEEEEEECCCCC T ss_conf 55332089999999789997 No 2 >3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase, structural genomics; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Probab=15.92 E-value=65 Score=14.14 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=16.0 Q ss_pred CCCCEEEEEEEECCCCCCC Q ss_conf 3244145788733678862 Q gi|254780983|r 32 SFKNYQARLEFSIPKDSND 50 (55) Q Consensus 32 sfknyqarlefsipkdsnd 50 (55) .|.||..++||-++..+|- T Consensus 45 ~y~dF~L~~e~k~~~~~NS 63 (201) T 3imm_A 45 EYENFELDLDFKTDVGTNS 63 (201) T ss_dssp CBCSEEEEEEEEECTTCEE T ss_pred EEEEEEEEEEEEECCCCCC T ss_conf 4503999999998999963 No 3 >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Probab=15.88 E-value=30 Score=15.95 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=16.9 Q ss_pred CCCCCCCCEEEEEEEECCCCCCC Q ss_conf 47543244145788733678862 Q gi|254780983|r 28 KNPYSFKNYQARLEFSIPKDSND 50 (55) Q Consensus 28 knpysfknyqarlefsipkdsnd 50 (55) -++|-+.+.+.--+-|-|+|||| T Consensus 207 ~~~Y~i~~~~~~~~~s~~~~~~~ 229 (229) T 1l0b_A 207 LDAYLVQNITCGRDGSEPQDSND 229 (229) T ss_dssp GGGGBCC---------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCC T ss_conf 51354788644557889899998 No 4 >3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} Probab=13.41 E-value=76 Score=13.75 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.0 Q ss_pred CCCCEEEEEEEECCCCCCC Q ss_conf 3244145788733678862 Q gi|254780983|r 32 SFKNYQARLEFSIPKDSND 50 (55) Q Consensus 32 sfknyqarlefsipkdsnd 50 (55) .|+||.-++||-++..+|. T Consensus 75 ~y~dF~L~~E~k~~~~~NS 93 (241) T 3h3l_A 75 KFKNFVFEIEWKIDKAGNS 93 (241) T ss_dssp CBSSEEEEEEEEECBTCEE T ss_pred EECCEEEEEEEEECCCCCC T ss_conf 7455699999997667888 No 5 >3osd_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.80A {Bacteroides thetaiotaomicron} PDB: 3nmb_A Probab=6.82 E-value=1.4e+02 Score=12.33 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=15.3 Q ss_pred CCCCEEEEEEEECCCCCC Q ss_conf 324414578873367886 Q gi|254780983|r 32 SFKNYQARLEFSIPKDSN 49 (55) Q Consensus 32 sfknyqarlefsipkdsn 49 (55) .|.||.-|+||-++...| T Consensus 92 ~y~dF~L~lE~k~~~~~N 109 (265) T 3osd_A 92 KFKNFELEMEWKVSKGGN 109 (265) T ss_dssp EESSEEEEEEEEECTTCE T ss_pred EEEEEEEEEEEEECCCCC T ss_conf 102599999999668998 No 6 >3d1b_A RNA-induced transcriptional silencing complex protein TAS3; all alpha motif, RITS complex, immunoglobulin fold, cell cycle; 1.70A {Schizosaccharomyces pombe} PDB: 3d1d_A Probab=5.82 E-value=41 Score=15.25 Aligned_cols=10 Identities=60% Similarity=1.009 Sum_probs=3.6 Q ss_pred ECCCCCCCEE Q ss_conf 3367886236 Q gi|254780983|r 43 SIPKDSNDLY 52 (55) Q Consensus 43 sipkdsndly 52 (55) |...|.|||| T Consensus 9 slttdkndl~ 18 (124) T 3d1b_A 9 SLTTDKNDLY 18 (124) T ss_dssp ----CHHHHH T ss_pred CCCCCCCHHH T ss_conf 3355551389 No 7 >1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A Probab=5.63 E-value=1.6e+02 Score=12.00 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=13.4 Q ss_pred CCCCCCCEEEEEEEECCCCCCCEEE Q ss_conf 7543244145788733678862368 Q gi|254780983|r 29 NPYSFKNYQARLEFSIPKDSNDLYI 53 (55) Q Consensus 29 npysfknyqarlefsipkdsndlyi 53 (55) .|-.|-.-|+|- -+|||||- T Consensus 196 ~pG~FGDIQart-----~~s~DlyA 215 (390) T 1i9w_A 196 QPGRFGDIQSRT-----VESNDLYA 215 (390) T ss_pred CCCCCCCCCCCC-----CCCCCEEE T ss_conf 986654424045-----88432250 No 8 >1z8y_A Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} Probab=5.53 E-value=1.6e+02 Score=11.91 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=14.2 Q ss_pred CCCCCCCEEEEEEEECCCCCCCEEE Q ss_conf 7543244145788733678862368 Q gi|254780983|r 29 NPYSFKNYQARLEFSIPKDSNDLYI 53 (55) Q Consensus 29 npysfknyqarlefsipkdsndlyi 53 (55) .|-.|-.-|+|- -+|+|||- T Consensus 196 ~pG~FGDIQsrt-----~~s~DlyA 215 (290) T 1z8y_A 196 KPGAFGDIQATS-----LTSKDLIA 215 (290) T ss_dssp CTTSTTSEEBSS-----SSCSCCEE T ss_pred CCCCCCCCCCCC-----CCCCCEEC T ss_conf 986644433035-----77211140 No 9 >2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1 Probab=5.36 E-value=1.5e+02 Score=12.18 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=0.0 Q ss_pred CCCEEEEEEEECCCCCCCEEEEC Q ss_conf 24414578873367886236869 Q gi|254780983|r 33 FKNYQARLEFSIPKDSNDLYIKL 55 (55) Q Consensus 33 fknyqarlefsipkdsndlyikl 55 (55) .......|.|++-.+++..+++. T Consensus 51 l~~~~~~L~F~ide~~~~~vVkV 73 (117) T 2hc5_A 51 LEPSQVHLKFELHDKLNEYYVKV 73 (117) T ss_dssp HTTSSCCEEEEEEEETTEEEEEE T ss_pred HHHCCCEEEEEEECCCCCEEEEE T ss_conf 98539704999966889899999 No 10 >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} Probab=5.28 E-value=1.3e+02 Score=12.44 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=0.0 Q ss_pred CCEEEEC Q ss_conf 6236869 Q gi|254780983|r 49 NDLYIKL 55 (55) Q Consensus 49 ndlyikl 55 (55) |||||.| T Consensus 27 NDlYitl 33 (220) T 3l4c_A 27 NDIYVTL 33 (220) T ss_dssp EEEEEEE T ss_pred CEEEEEE T ss_conf 2089983 Done!