Query gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:56:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780983.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hl9a1 b.71.1.3 (A:357-448) P 9.7 36 0.0026 14.3 0.4 19 28-46 58-76 (92)
2 d1in0a1 d.58.49.1 (A:2-89) Hyp 8.9 64 0.0046 12.9 2.0 20 25-44 23-42 (88)
3 d1giqa1 d.166.1.1 (A:3-209) En 8.4 67 0.0049 12.8 2.8 24 30-53 144-167 (207)
4 d1l8ya_ a.21.1.1 (A:) Nucleola 7.5 71 0.0051 12.6 1.2 13 9-21 13-26 (84)
5 d2hc5a1 d.352.1.1 (A:1-109) Hy 5.4 84 0.0061 12.2 0.6 21 35-55 53-73 (109)
6 d3byqa1 d.79.9.1 (A:2-192) Unc 5.0 77 0.0056 12.4 0.2 24 24-48 132-155 (191)
7 d1o22a_ d.238.1.1 (A:) Hypothe 4.8 1.1E+02 0.0077 11.6 1.8 22 16-37 122-143 (149)
8 d2icwg1 a.202.1.1 (G:1-213) Su 4.3 1.2E+02 0.0085 11.4 1.0 13 19-31 73-85 (213)
9 d1zcea1 b.122.1.8 (A:2-147) Hy 4.0 53 0.0039 13.3 -1.2 6 34-39 32-37 (146)
10 d1a0ca_ c.1.15.3 (A:) D-xylose 3.9 1.1E+02 0.0077 11.7 0.2 11 28-38 18-28 (437)
No 1
>d1hl9a1 b.71.1.3 (A:357-448) Putative alpha-L-fucosidase C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.70 E-value=36 Score=14.26 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.3
Q ss_pred CCCCCCCCEEEEEEEECCC
Q ss_conf 4754324414578873367
Q gi|254780983|r 28 KNPYSFKNYQARLEFSIPK 46 (55)
Q Consensus 28 knpysfknyqarlefsipk 46 (55)
....||||....||...||
T Consensus 58 gerlsfknvgknleitvpk 76 (92)
T d1hl9a1 58 GERLSFKNVGKNLEITVPK 76 (92)
T ss_dssp CCEEEEEEETTEEEEECCH
T ss_pred CCEEEECCCCCCEEEECCH
T ss_conf 5444311137755895466
No 2
>d1in0a1 d.58.49.1 (A:2-89) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=8.92 E-value=64 Score=12.87 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHCCCCCCCCEEEEEEEEC
Q ss_conf 96347543244145788733
Q gi|254780983|r 25 MFIKNPYSFKNYQARLEFSI 44 (55)
Q Consensus 25 mfiknpysfknyqarlefsi 44 (55)
-=|.|-|-||+-.+.+|++-
T Consensus 23 rEi~~RyDFKgs~a~ie~~~ 42 (88)
T d1in0a1 23 RVLSTRYDFRGVEAVIELNE 42 (88)
T ss_dssp HHHTTBGGGTTCCEEEEEET
T ss_pred HHHHCCCCCCCCCCEEEEEC
T ss_conf 99862515489971488824
No 3
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin {Clostridium perfringens [TaxId: 1502]}
Probab=8.42 E-value=67 Score=12.76 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 543244145788733678862368
Q gi|254780983|r 30 PYSFKNYQARLEFSIPKDSNDLYI 53 (55)
Q Consensus 30 pysfknyqarlefsipkdsndlyi 53 (55)
..+|..+...|++.+||.+.-.|+
T Consensus 144 ~s~~~~~pill~i~vPkGt~~~yl 167 (207)
T d1giqa1 144 NGDEKPTPLLIHLKLPKNTGMLPY 167 (207)
T ss_dssp TTSCCCSSEEEEEEECTTCBCEEE
T ss_pred CCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 665557756999985799721275
No 4
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.53 E-value=71 Score=12.62 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=8.1
Q ss_pred HHHHHHHH-HHHHH
Q ss_conf 98988999-99999
Q gi|254780983|r 9 FCTQTVIG-YIAEF 21 (55)
Q Consensus 9 fctqtvig-yiaef 21 (55)
.-.|.||| |.|.|
T Consensus 13 iWQqsvIgdYlA~f 26 (84)
T d1l8ya_ 13 IWQQSVIGDYLARF 26 (84)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99998999999999
No 5
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}
Probab=5.42 E-value=84 Score=12.22 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=16.5
Q ss_pred CEEEEEEEECCCCCCCEEEEC
Q ss_conf 414578873367886236869
Q gi|254780983|r 35 NYQARLEFSIPKDSNDLYIKL 55 (55)
Q Consensus 35 nyqarlefsipkdsndlyikl 55 (55)
.....|.|++-.+++..+++.
T Consensus 53 ~~~~~L~F~~de~~~~~vVkV 73 (109)
T d2hc5a1 53 PSQVHLKFELHDKLNEYYVKV 73 (109)
T ss_dssp TSSCCEEEEEEEETTEEEEEE
T ss_pred HCCCCEEEEEECCCCCEEEEE
T ss_conf 339824999966889799999
No 6
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672 {Bordetella bronchiseptica [TaxId: 518]}
Probab=5.01 E-value=77 Score=12.41 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=16.1
Q ss_pred HHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf 9963475432441457887336788
Q gi|254780983|r 24 MMFIKNPYSFKNYQARLEFSIPKDS 48 (55)
Q Consensus 24 mmfiknpysfknyqarlefsipkds 48 (55)
||.....|+|..|++ .||+||.-.
T Consensus 132 l~hk~~~~~rsH~dt-~~~~i~DAP 155 (191)
T d3byqa1 132 VHYIHASYVRSHFNS-IEIGIQDAP 155 (191)
T ss_dssp EEETTCTTBGGGCEE-EEECBTTBS
T ss_pred CCCCCCCCCCCCCEE-EEEECCCCC
T ss_conf 656656531353305-899738999
No 7
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=4.82 E-value=1.1e+02 Score=11.64 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 9999999999634754324414
Q gi|254780983|r 16 GYIAEFMKMMFIKNPYSFKNYQ 37 (55)
Q Consensus 16 gyiaefmkmmfiknpysfknyq 37 (55)
...++|||..|-...+.-.||.
T Consensus 122 e~v~~fmkyffeskgw~pg~y~ 143 (149)
T d1o22a_ 122 ELVEEFMKYFFESKGWNPGEYT 143 (149)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999999998742688987516
No 8
>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma arthritidis [TaxId: 2111]}
Probab=4.30 E-value=1.2e+02 Score=11.42 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999634754
Q gi|254780983|r 19 AEFMKMMFIKNPY 31 (55)
Q Consensus 19 aefmkmmfiknpy 31 (55)
.|..+|||.|-.-
T Consensus 73 ~~if~mmflkl~v 85 (213)
T d2icwg1 73 KEIFNMMFLKLSV 85 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999988850
No 9
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.00 E-value=53 Score=13.29 Aligned_cols=6 Identities=83% Similarity=1.337 Sum_probs=0.0
Q ss_pred CCEEEE
Q ss_conf 441457
Q gi|254780983|r 34 KNYQAR 39 (55)
Q Consensus 34 knyqar 39 (55)
.|||||
T Consensus 32 RNyqAr 37 (146)
T d1zcea1 32 RNYQAR 37 (146)
T ss_dssp CCHHHH
T ss_pred CHHHHH
T ss_conf 509999
No 10
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]}
Probab=3.88 E-value=1.1e+02 Score=11.67 Aligned_cols=11 Identities=64% Similarity=1.153 Sum_probs=0.0
Q ss_pred CCCCCCCCEEE
Q ss_conf 47543244145
Q gi|254780983|r 28 KNPYSFKNYQA 38 (55)
Q Consensus 28 knpysfknyqa 38 (55)
+||.+||-|.+
T Consensus 18 ~nplaf~~y~~ 28 (437)
T d1a0ca_ 18 NNPYSFKFYNP 28 (437)
T ss_dssp CCSSEESSCCT
T ss_pred CCCCCCCCCCC
T ss_conf 99760035697
Done!