RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780983|ref|YP_003065396.1| hypothetical protein
CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 1.5
 Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 8/27 (29%)

Query: 32 SFKNYQARLEF----SIPKDSNDLYIK 54
          + K  QA L+     S P     L IK
Sbjct: 21 ALKKLQASLKLYADDSAPA----LAIK 43


>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics,
           PSI-2, protein structure initiative; HET: C2E; 1.92A
           {Vibrio cholerae O395} SCOP: b.45.2.1 b.45.2.2 PDB:
           1yln_A*
          Length = 251

 Score = 24.1 bits (52), Expect = 8.5
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 3   DSALCKFCTQTVIGYIAEFMKMMFIKNPYSFKNYQARLEFSIP 45
           + AL  F    ++  + E + M F+  P + +  Q R E    
Sbjct: 100 EGALIHF-RSQLMHILQEPVPMAFLSIPNTMQVSQLRKEPRFE 141


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 467,175
Number of extensions: 15201
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 55
Length of database: 5,693,230
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,038,642
Effective search space: 141081976
Effective search space used: 141081976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.4 bits)