BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780983|ref|YP_003065396.1| hypothetical protein
CLIBASIA_04420 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780983|ref|YP_003065396.1| hypothetical protein CLIBASIA_04420 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 55

 Score =  115 bits (287), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MIDSALCKFCTQTVIGYIAEFMKMMFIKNPYSFKNYQARLEFSIPKDSNDLYIKL 55
          MIDSALCKFCTQTVIGYIAEFMKMMFIKNPYSFKNYQARLEFSIPKDSNDLYIKL
Sbjct: 1  MIDSALCKFCTQTVIGYIAEFMKMMFIKNPYSFKNYQARLEFSIPKDSNDLYIKL 55


>gi|254780516|ref|YP_003064929.1| type II modification methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 83

 Score = 21.6 bits (44), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 29 NPYSFKNYQAR 39
          NPYS K YQA 
Sbjct: 36 NPYSVKTYQAN 46


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 20.8 bits (42), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 24   MMFIKNPYSFKNYQARLEFSIPKDSNDL 51
             + IK+  S    Q+  + S+ KD+N+L
Sbjct: 1410 QILIKSHDSLMKAQSETKLSLDKDANNL 1437


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,826
Number of Sequences: 1233
Number of extensions: 879
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 328,796
effective HSP length: 27
effective length of query: 28
effective length of database: 295,505
effective search space:  8274140
effective search space used:  8274140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)