RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
(125 letters)
>gnl|CDD|35465 KOG0244, KOG0244, KOG0244, Kinesin-like protein [Cytoskeleton].
Length = 913
Score = 29.2 bits (65), Expect = 0.32
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 12 LISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNT 71
+ L + RR E+ + AK Y S L AE E ++ ELN
Sbjct: 478 ELEKRLAEKEPLTRRK---AYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNV 534
Query: 72 LSENEKKAFFEHEKKVTSNLNYNARDRKHNINQ 104
+ K E +K+ S + +K +Q
Sbjct: 535 FNRLAAKLGEERVQKLKSLETQISLLKKKLSSQ 567
>gnl|CDD|38556 KOG3346, KOG3346, KOG3346, Phosphatidylethanolamine binding protein
[General function prediction only].
Length = 185
Score = 26.8 bits (59), Expect = 1.7
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 81 FEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGN 116
+ ++ S+ N +F + KY G
Sbjct: 128 YRQPGRLDSDEPSPLSRGNFNTRKFAK---KYELGT 160
>gnl|CDD|145378 pfam02191, OLF, Olfactomedin-like domain.
Length = 250
Score = 26.4 bits (59), Expect = 2.0
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 81 FEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYRNYR 123
F + S L+YN RDRK Y + NGY Y
Sbjct: 214 FPNRYGYISMLDYNPRDRK-----------LYAWDNGYQLTYD 245
>gnl|CDD|113603 pfam04837, MbeB_N, MbeB-like, N-term conserved region. This family
represents an N-terminal conserved region of MbeB/MobB
proteins. These proteins are essential for specific
plasmid transfer.
Length = 52
Score = 26.2 bits (58), Expect = 2.7
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 46 SRLAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNI 102
S++ L E++ KE + + E K AF +HEK V L + ++ I
Sbjct: 2 SKILDLAKTFEQKSKE------QAESTEEMVKSAFEKHEKSVREALKESEKNISDAI 52
>gnl|CDD|32136 COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases
[Nucleotide transport and metabolism / Coenzyme
metabolism].
Length = 497
Score = 25.9 bits (57), Expect = 3.4
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 92 NYNARDRKHNINQFYEARGKYRYGNGYYRNYR 123
+ R + N+++ Y G+Y Y G+ N+R
Sbjct: 409 YFLVRKGRLNLDELYTEPGEYYYYGGW--NWR 438
>gnl|CDD|38748 KOG3540, KOG3540, KOG3540, Beta amyloid precursor protein [General
function prediction only].
Length = 615
Score = 25.8 bits (56), Expect = 3.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 56 EKRLKEFDKITRE---LNTLSEN---EKKAFFEHEKKVTSNLNYNARDRKHNINQFYEAR 109
EK K DK+ +E T ++N EK+A +H +K S+L A + + + +EAR
Sbjct: 260 EKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKTVSSLEEEAARERQQLVETHEAR 319
>gnl|CDD|100271 CHL00171, cpcB, phycocyanin beta subunit; Reviewed.
Length = 172
Score = 25.7 bits (56), Expect = 3.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 48 LAQLCAENEKRLKEFDKITRELNTLSENEKKAFFEHEKKV 87
L+++ AE KRL +KI +T+ N ++ F + ++
Sbjct: 27 LSKMVAEGNKRLDAVNKINANASTIVTNAARSLFAEQPQL 66
>gnl|CDD|88581 cd05395, RasGAP_RASA4, Ras GTPase activating-like 4 protein
(RASAL4), also known as Ca2+ -promoted Ras inactivator
(CAPRI), is a member of the GAP1 family. Members of the
GAP1 family are characterized by a conserved domain
structure comprising N-terminal tandem C2 domains, a
highly conserved central RasGAP domain, and a C-terminal
pleckstrin-homology domain that is associated with a
Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a
cytosolic protein that undergoes a rapid translocation
to the plasma membrane in response to a
receptor-mediated elevation in the concentration of
intracellular free Ca2+ ([Ca2+]i). However, unlike
RASAL, RASAL4 does not sense oscillations in [Ca2+]i..
Length = 337
Score = 25.4 bits (55), Expect = 4.8
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 24 ARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNTLSENE 76
A+ T G+ + +A AK + L + +LK+F ITR +N E
Sbjct: 238 AKAVQTVGNMDTLACRAKEPWMVPLQPAIQQGITQLKDF--ITRLVNCEESEE 288
>gnl|CDD|153278 cd07594, BAR_Endophilin_B, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-B. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
play roles in synaptic vesicle formation, virus budding,
mitochondrial morphology maintenance, receptor-mediated
endocytosis inhibition, and endosomal sorting.
Endophilins contain an N-terminal N-BAR domain (BAR
domain with an additional N-terminal amphipathic helix),
followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Vertebrates contain
two endophilin-B isoforms. Endophilin-B proteins are
cytoplasmic proteins expressed mainly in the heart,
placenta, and skeletal muscle.
Length = 229
Score = 25.4 bits (56), Expect = 4.8
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 33 EERIATCAKPGYSSRLAQLCAENEKRLKEFDKITREL-NTLSENEKKAFFEHEKKVTSNL 91
EE++ T K Y + L +K +KI ++ L N E + L
Sbjct: 4 EEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPN---PNVRVEDFIYEKL 60
Query: 92 NYNARDRKHNINQFYEA 108
+ DR N+ Q +A
Sbjct: 61 DRKKPDRLSNLEQLGQA 77
>gnl|CDD|35906 KOG0687, KOG0687, KOG0687, 26S proteasome regulatory complex,
subunit RPN7/PSMD6 [Posttranslational modification,
protein turnover, chaperones].
Length = 393
Score = 25.2 bits (55), Expect = 5.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 45 SSRLAQLCAENEKRLKEFD-KITRELNTLSENE 76
L + NE+++KE D KI L E+E
Sbjct: 70 QDLLNSMKKANEEKIKELDEKIEDAEENLGESE 102
>gnl|CDD|31956 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 25.2 bits (55), Expect = 5.2
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 58 RLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARD 97
L ++D T E L + E F+ E V+ + A D
Sbjct: 389 TLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADD 428
>gnl|CDD|177216 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 25.2 bits (56), Expect = 5.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 1 MKKYITLLTVLLISNVLNLY 20
LL +L++S+++ LY
Sbjct: 264 SNNMFFLLFILIMSSLITLY 283
>gnl|CDD|38845 KOG3639, KOG3639, KOG3639, C2 Ca2+-binding motif-containing protein
[General function prediction only].
Length = 1239
Score = 25.1 bits (54), Expect = 5.8
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 54 ENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
E +L EF E +E +++A FE +++ +A + E +
Sbjct: 192 EEMIKLGEFQLFANEPLKAAERDEEADFEADEE-----ASDAEIKAEIRELIEEHTEEVA 246
Query: 114 YGNGYYRNYRSQ 125
+ R Q
Sbjct: 247 QKHDELRKSLLQ 258
>gnl|CDD|37571 KOG2360, KOG2360, KOG2360, Proliferation-associated nucleolar
protein (NOL1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 413
Score = 24.9 bits (54), Expect = 5.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 36 IATCAKPGYSSRLAQLCAENEKRLKEFDKITRELNTLSENEKKA 79
I TCA PG + N+ ++ F++ + TL + K A
Sbjct: 218 IDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA 261
>gnl|CDD|34786 COG5187, RPN7, 26S proteasome regulatory complex component,
contains PCI domain [Posttranslational modification,
protein turnover, chaperones].
Length = 412
Score = 25.0 bits (54), Expect = 5.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 45 SSRLAQLCAENEKRLKEFDKITRELNTLS 73
R+ L +NE++++E D+ RE +
Sbjct: 81 RGRMNTLLKKNEEKIEELDERIREKEEDN 109
>gnl|CDD|31717 COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and
metabolism].
Length = 167
Score = 24.4 bits (53), Expect = 8.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 58 RLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLN 92
LK + + ++L E +K EHE+KVTS++N
Sbjct: 69 ELKAIEAPPNKFSSLKELFEKTL-EHEQKVTSSIN 102
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,464,111
Number of extensions: 66162
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 45
Length of query: 125
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,491,799
Effective search space: 193147357
Effective search space used: 193147357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)