RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
          Length = 881

 Score = 28.5 bits (64), Expect = 0.43
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 54  ENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
           + +      D+   EL TL+++  KA  E  +K  +  N     RK  IN  Y A     
Sbjct: 501 DVDYYFDFSDEFKAELKTLTKSSLKALLEECEKEIALCNTIQMARKILINSLYGA----- 555

Query: 114 YGNGYYRNYR 123
            GN ++R Y 
Sbjct: 556 LGNEHFRYYD 565


>gnl|CDD|181745 PRK09272, PRK09272, hypothetical protein; Provisional.
          Length = 109

 Score = 28.7 bits (65), Expect = 0.47
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 8/30 (26%)

Query: 3  KY-ITLLTVLLISNVLNLYDAKARRFPTYG 31
          KY I+ L ++ I+ +       A+R PT G
Sbjct: 6  KYLISALIIVAITEI-------AKRSPTLG 28


>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
          Length = 576

 Score = 26.1 bits (58), Expect = 2.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 75  NEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGY 118
           N++ AF ++E++    L Y       +  +F EA G    G GY
Sbjct: 462 NQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACG----GKGY 501


>gnl|CDD|148330 pfam06664, MIG-14_Wnt-bd, Wnt-binding factor required for Wnt
           secretion.  MIG-14 is a Wnt-binding factor. Newly
           synthesized EGL-20/Wnt binds to MIG-14 in the Golgi,
           targetting the Wnt to the cell membrane for secretion.
           AP-2-mediated endocytosis and retromer retrieval at the
           sorting endosome would recycle MIG-14 to the Golgi,
           where it can bind to EGL-20/Wnt for next cycle of
           secretion.
          Length = 291

 Score = 25.7 bits (57), Expect = 3.5
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 3   KYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATC 39
           K++ L T+L  +  + L    +  F TY S       
Sbjct: 234 KFLMLFTLLCAAITVALLGNFSSSFSTYYSSSAFFLG 270


>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
           adenylyltransferase, NadR type.  E. coli NadR has also
           been found to regulate the import of its substrate,
           nicotinamide ribonucleotide, but it is not known if the
           other members of this model share that activity.
          Length = 325

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 2   KKYITLLTVLLISN--VLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRL 59
           +KY+ L  VL+  +    ++   + R  P +   + I    +P +   +A L  E+  + 
Sbjct: 118 EKYLGLEVVLVDPDRTFFSVSATQIRENP-FQHWKHIPREVRPFFVKTVAILGGESTGKS 176

Query: 60  KEFDKITRELNTLSENEKKAFFEHEK 85
              +K+    NT S  E    +  EK
Sbjct: 177 TLVNKLAAVFNTTSAWEYAREYVEEK 202


>gnl|CDD|164924 PHA02523, 43B, DNA polymerase subunit B; Provisional.
          Length = 391

 Score = 25.4 bits (55), Expect = 4.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 69  LNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYRNY 122
           LNTLS +E +      +K     N N  +RK  IN  Y A      GN ++R +
Sbjct: 17  LNTLSTDELQQMIARCEKEEQKRNTNQLNRKILINSLYGA-----LGNNWFRYF 65


>gnl|CDD|162443 TIGR01603, maj_tail_phi13, phage major tail protein, phi13 family. 
           This model describes a set of proteins that share low
           levels of sequence similarity but similar lengths and
           similar patterns of charged, hydrophobic, and Gly/Pro
           residues. All members (except one attributed to mouse
           embryo cDNA) belong to phage of Gram-positive bacteria.
           Several are identified as phage major tail proteins.
           Some members of this family have additional C-terminal
           regions of about 100 residues not included in this
           model.
          Length = 190

 Score = 25.5 bits (56), Expect = 4.4
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 64  KITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEAR---GKYRY 114
           K+  EL  +  +++K     +      L Y   D+   +   +EA    GK RY
Sbjct: 63  KVETELIDIPSDQRKFLLGEKLGSDGVLKYGKDDKPPEVAVLFEAPNTVGKNRY 116


>gnl|CDD|180757 PRK06930, PRK06930, positive control sigma-like factor; Validated.
          Length = 170

 Score = 25.1 bits (55), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 54  ENEKRLKEFDKITRE--LNTLSENEKKAFFEH 83
           E E  + E+DKI  E  L+ L+E EK+ +  H
Sbjct: 95  EPESVISEWDKIRIEDALSVLTEREKEVYLMH 126


>gnl|CDD|182921 PRK11039, PRK11039, putative dehydrogenase; Provisional.
          Length = 140

 Score = 25.0 bits (55), Expect = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 90  NLNYNARDRKHNINQF 105
           N   + RD KH INQF
Sbjct: 106 NKKLHQRDEKHQINQF 121


>gnl|CDD|182626 PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.
          Length = 436

 Score = 25.0 bits (55), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 46  SRLAQLCAENEKRLKE 61
           +R A LCAE E+ L E
Sbjct: 213 ARSAALCAEQEQLLDE 228


>gnl|CDD|162753 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase.  This model
           describes acetate-CoA ligase (EC 6.2.1.1), also called
           acetyl-CoA synthetase and acetyl-activating enzyme. It
           catalyzes the reaction ATP + acetate + CoA = AMP +
           diphosphate + acetyl-CoA and belongs to the family of
           AMP-binding enzymes described by Pfam model pfam00501.
          Length = 625

 Score = 24.9 bits (55), Expect = 5.4
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 10/41 (24%)

Query: 92  NYNARDR------KHNINQFYEA----RGKYRYGNGYYRNY 122
            Y    R      KH +  FY A    R   R G+ + + +
Sbjct: 315 TYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKH 355


>gnl|CDD|152076 pfam11640, TAN, Telomere-length maintenance and DNA damage
          repair.  ATM is a large protein kinase, in humans,
          critical for responding to DNA double-strand breaks
          (DSBs). Tel1, the orthologue from budding yeast, also
          regulates responses to DSBs. Tel1 is important for
          maintaining viability and for phosphorylation of the
          DNA damage signal transducer kinase Rad53 (an
          orthologue of mammalian CHK2). In addition to
          functioning in the response to DSBs, numerous findings
          indicate that Tel1/ATM regulates telomeres. The overall
          domain structure of Tel1/ATM is shared by proteins of
          the phosphatidylinositol 3-kinase (PI3K)-related kinase
          (PIKK) family, but this family carries a unique and
          functionally important TAN sequence motif, near its
          N-terminal, LxxxKxxE/DRxxxL. which is conserved
          specifically in the Tel1/ATM subclass of the PIKKs. The
          TAN motif is essential for both telomere length
          maintenance and Tel1 action in response to DNA damage.
          It is classified as an EC:2.7.11.1.
          Length = 154

 Score = 25.0 bits (55), Expect = 5.7
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 53 AENEKRL--KEFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNAR 96
           E  KRL  K+F KI   L  L E EK  +   + K  S L+  +R
Sbjct: 35 NEEGKRLNDKQFHKIFEALFRLIEKEKSKYSTAKSKSQSTLSSESR 80


>gnl|CDD|183484 PRK12379, PRK12379, propionate/acetate kinase; Provisional.
          Length = 396

 Score = 24.7 bits (54), Expect = 7.3
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 37 ATCAKPGYSSRLAQLCAENEKR 58
          A  A   Y   L  +  E EKR
Sbjct: 53 APLAHHSYEGALKAIAFELEKR 74


>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
          Provisional.
          Length = 459

 Score = 24.3 bits (53), Expect = 7.9
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 44 YSSRLAQLCAENEKRLKEFDKITRE-LNTLSENEKKAFFEHEKKVTSNLNYNA 95
           S+    L  +     +E   + RE +    E+    F E+ K VT+  +Y A
Sbjct: 13 CSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGA 65


>gnl|CDD|162684 TIGR02072, BioC, biotin biosynthesis protein BioC.  This enzyme,
           which is found in biotin biosynthetic gene clusters in
           proteobacteria, firmicutes, green-sulfur bacteria,
           fusobacterium and bacteroides, is believed to carry out
           an enzymatic step prior to the formation of pimeloyl-CoA
           (although attribution of this annotation is not
           traceable). The enzyme appears related to
           methyltransferases by homology.
          Length = 240

 Score = 24.2 bits (53), Expect = 9.0
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 64  KITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYRNYR 123
            +  EL TLS ++      H KK  +N   + R  +  +  F E   +    +G    Y 
Sbjct: 173 TLEEELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQPDGLPLTYH 232


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,014,800
Number of extensions: 111572
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 42
Length of query: 125
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,222,617
Effective search space: 181572531
Effective search space used: 181572531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)