RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62] (125 letters) >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.1 bits (69), Expect = 0.084 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 21/65 (32%) Query: 54 ENEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTSNL-NYNARD----RKHNINQ---- 104 E KRL+E D ++ + E E + E KK +L +N R K+ IN Sbjct: 93 EQRKRLQELDAASKVM----EQEWR---EKAKK---DLEEWNQRQSEQVEKNKINNRIAD 142 Query: 105 --FYE 107 FY+ Sbjct: 143 KAFYQ 147 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 0.17 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 4/22 (18%) Query: 76 EKKAFFEHEKKVTSNLNYNARD 97 EK+A KK+ ++L A D Sbjct: 18 EKQAL----KKLQASLKLYADD 35 >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299 Score = 28.2 bits (62), Expect = 0.55 Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%) Query: 102 INQF-YEARGKYRYGNGYYRNYRSQ 125 +N A Y YG YY S+ Sbjct: 273 LNGVIKRASTAYSYGYNYYGYSYSE 297 >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* Length = 365 Score = 26.7 bits (58), Expect = 1.6 Identities = 10/28 (35%), Positives = 13/28 (46%) Query: 2 KKYITLLTVLLISNVLNLYDAKARRFPT 29 K + L T +LISN Y+ R T Sbjct: 12 KTVVPLHTWVLISNFKLSYNILRRADGT 39 >1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* Length = 221 Score = 25.9 bits (57), Expect = 2.4 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 43 GYSSRLAQ---LCAENEKRLKEFDKITRELNTLSENEKKAF------FEHEKKVTSNLNY 93 G+ + ++ A+ + D+I R+LN + E + F F + +L Sbjct: 23 GFRHQNSEGTGQAADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEK 82 Query: 94 NARDRKHNI 102 D K ++ Sbjct: 83 YVEDTKIDL 91 >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Score = 24.7 bits (53), Expect = 6.4 Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 55 NEKRLKEFDKITRELNTLSENEKKAFFEHEKKVTS 89 + K + K+ L L++ ++ E EK +T Sbjct: 476 DGKPFQSVSKVDESLEKLADEVDESAKEAEKALTP 510 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.132 0.375 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,059,436 Number of extensions: 43324 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 25 Length of query: 125 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 44 Effective length of database: 3,729,466 Effective search space: 164096504 Effective search space used: 164096504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.1 bits)