BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780984|ref|YP_003065397.1| hypothetical protein
CLIBASIA_04425 [Candidatus Liberibacter asiaticus str. psy62]
(125 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 255 bits (651), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK
Sbjct: 1 MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
Query: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR 120
EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR
Sbjct: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYRYGNGYYR 120
Query: 121 NYRSQ 125
NYRSQ
Sbjct: 121 NYRSQ 125
>gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 85
Score = 63.5 bits (153), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 65 ITRELNTLSENEKKAFFEHEKKVTSNLNYNARDRKHNINQFYEARGKYR 113
ITR + L +++KKAFF HEKKV +LNYNA DRK NI++ Y+AR KYR
Sbjct: 18 ITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYR 66
>gi|254780981|ref|YP_003065394.1| hypothetical protein CLIBASIA_04410 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 45.8 bits (107), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 1 MKKYITLLTVLLISNVLNLYDAKARRFPTYGSEERIATCAKPGYSSRLAQLCAENEKRLK 60
MKKY T+LT+L +S+ +N P E+ + + P + L L AENEK K
Sbjct: 1 MKKYFTILTMLFVSSAIN---------PCGIEEDNLKSSPLPHIA--LESLSAENEK--K 47
Query: 61 EFDKITRELNTLSENEKKAFFEHEKKVTSN 90
E + +++ EN KK F EHEKK T +
Sbjct: 48 ELSEHEKKVIESQENPKKQFSEHEKKETDD 77
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 25.0 bits (53), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 70 NTLSENEKKAFFEHEKKVTS 89
+TLSE EK+ + EH KK+ +
Sbjct: 410 HTLSEKEKQDWLEHRKKMLT 429
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 23.1 bits (48), Expect = 1.8, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 42 PGYS--------SRLAQLCAENEKRL---KEFDKITRELNTLSENEKKAFFEHEKKVTS 89
PG+S + A + A +RL +EF+ ++ +E A E EKK+T+
Sbjct: 350 PGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408
>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 411
Score = 21.9 bits (45), Expect = 4.2, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 31 GSEERIATCAKPGYSSRLAQLCAE 54
G E + A G + RLA+LC +
Sbjct: 33 GQEVAMVVSAMSGETDRLAELCRQ 56
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 21.2 bits (43), Expect = 6.8, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 46 SRLAQLCAENEKRLKEFDKITRELNTLSENEK 77
++ ++ E+ KRL+EF + ++ +S EK
Sbjct: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 21.2 bits (43), Expect = 7.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 73 SENEKKAFFEHEKKVTSNLNYNARD 97
SE + + FE KK+TS A D
Sbjct: 135 SEQQTEDIFEESKKITSYQIIEAND 159
>gi|254780611|ref|YP_003065024.1| RNA polymerase factor sigma-32 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 302
Score = 20.8 bits (42), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 50 QLCAENEKRLKEFDKITRELNTLSENEKKAF 80
Q+ E E+R + +TR ++ L+ E++ F
Sbjct: 213 QVLIEKEERKNRRNMLTRSMSVLNPRERRIF 243
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,097
Number of Sequences: 1233
Number of extensions: 2955
Number of successful extensions: 13
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)