RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780985|ref|YP_003065398.1| hypothetical protein
CLIBASIA_04430 [Candidatus Liberibacter asiaticus str. psy62]
         (47 letters)



>gnl|CDD|37746 KOG2535, KOG2535, KOG2535, RNA polymerase II elongator complex,
           subunit ELP3/histone acetyltransferase [Chromatin
           structure and dynamics, Transcription].
          Length = 554

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 12  RLEYLDRGNTFSSPPEGYRTYY 33
           ++E++  G TF S PE YR Y+
Sbjct: 171 KVEFIVMGGTFMSLPEEYRDYF 192


>gnl|CDD|34560 COG4952, COG4952, Predicted sugar isomerase [Cell envelope
           biogenesis, outer membrane].
          Length = 430

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 20  NTFSSPPEGYRTYYFGACVHHKRFIR 45
           NTFS  P    +Y +G+  H     R
Sbjct: 129 NTFSDAPGQGHSYKYGSLSHTDAATR 154


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.146    0.485 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 665,188
Number of extensions: 22519
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 47
Length of database: 6,263,737
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,831,557
Effective search space: 157452039
Effective search space used: 157452039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)