RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780985|ref|YP_003065398.1| hypothetical protein
CLIBASIA_04430 [Candidatus Liberibacter asiaticus str. psy62]
         (47 letters)



>gnl|CDD|152172 pfam11736, DUF3299, Protein of unknown function (DUF3299).  This
          is a family of bacterial proteins of unknown function.
          Length = 144

 Score = 25.3 bits (56), Expect = 3.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 33 YFGACVH 39
          YFGAC+H
Sbjct: 80 YFGACIH 86


>gnl|CDD|183093 PRK11346, PRK11346, hypothetical protein; Provisional.
          Length = 285

 Score = 24.1 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 6   KKPDIIRLEYLDRGNTFSS 24
           K+PD+  L YL RG  F  
Sbjct: 244 KRPDLFNLNYLGRGKWFDL 262


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.146    0.485 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 821,601
Number of extensions: 31529
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 4
Length of query: 47
Length of database: 5,994,473
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,562,313
Effective search space: 150182451
Effective search space used: 150182451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)