Query gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 94 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 23:05:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780986.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jx0_A ARF GTPase-activating p 50.0 13 0.00054 17.3 3.4 25 56-80 105-129 (135) 2 1zw2_B Talin, metavinculin; co 27.5 25 0.001 15.7 1.9 18 63-80 2-19 (26) 3 3cm8_B Peptide from RNA-direct 19.7 14 0.00059 17.1 -0.6 14 47-60 3-16 (30) 4 1afo_A Glycophorin A; integral 9.1 82 0.0034 12.8 0.8 10 4-13 14-23 (40) 5 2ixo_A Serine/threonine-protei 8.3 1E+02 0.0044 12.2 1.8 28 63-90 267-301 (323) 6 1unl_D Cyclin-dependent kinase 8.2 52 0.0022 13.9 -0.5 28 56-90 85-113 (208) 7 1g92_A Poneratoxin, PAC-TX; ne 7.0 1.1E+02 0.0044 12.2 0.7 17 48-66 8-24 (26) 8 2b3t_A Protein methyltransfera 6.3 1.3E+02 0.0056 11.6 1.1 16 9-24 116-131 (276) 9 1tbx_A ORF F-93, hypothetical 4.9 39 0.0016 14.6 -2.6 36 1-44 1-36 (99) 10 1jdp_H CNP, C-type natriuretic 4.6 93 0.0039 12.5 -0.8 12 4-15 11-22 (26) No 1 >2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} Probab=49.96 E-value=13 Score=17.35 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2666667899887775555899997 Q gi|254780986|r 56 LLLLQGIHDALWDIAKATSALVFLY 80 (94) Q Consensus 56 llllqgihdalwdiakatsalvfly 80 (94) -++.|.+-+.-+|||||+--||-+. T Consensus 105 q~~tqqVi~cAydIAkAaK~LVT~~ 129 (135) T 2jx0_A 105 QLLTQQVIQCAYDIAKAAKQLVTIT 129 (135) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999997887452 No 2 >1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus} Probab=27.46 E-value=25 Score=15.75 Aligned_cols=18 Identities=50% Similarity=0.283 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 899887775555899997 Q gi|254780986|r 63 HDALWDIAKATSALVFLY 80 (94) Q Consensus 63 hdalwdiakatsalvfly 80 (94) -+|--.||.||||||--- T Consensus 2 leaaksiaaatsalvkaa 19 (26) T 1zw2_B 2 LEAAKSIAAATSALVKAA 19 (26) T ss_dssp HHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 078998999999999998 No 3 >3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus} Probab=19.66 E-value=14 Score=17.13 Aligned_cols=14 Identities=57% Similarity=0.895 Sum_probs=12.0 Q ss_pred CCCCCCCCHHHHHH Q ss_conf 37654274226666 Q gi|254780986|r 47 KGSMKKDPTLLLLQ 60 (94) Q Consensus 47 kgsmkkdptllllq 60 (94) -|||.-.||||.|. T Consensus 3 lgsmdvnptllflk 16 (30) T 3cm8_B 3 LGSMDVNPTLLFLK 16 (30) T ss_pred CCCCCCCCEEEEEE T ss_conf 55333586789996 No 4 >1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 Probab=9.10 E-value=82 Score=12.82 Aligned_cols=10 Identities=60% Similarity=1.052 Sum_probs=7.8 Q ss_pred CHHHHHHHHH Q ss_conf 4156898634 Q gi|254780986|r 4 LPLFGWMAGI 13 (94) Q Consensus 4 lplfgwmagi 13 (94) |-.||-|||+ T Consensus 14 lii~gvmagv 23 (40) T 1afo_A 14 LIIFGVMAGV 23 (40) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999989 No 5 >2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A* Probab=8.33 E-value=1e+02 Score=12.22 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=22.1 Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH Q ss_conf 89988777-------55558999972778876565 Q gi|254780986|r 63 HDALWDIA-------KATSALVFLYGASLLCKTII 90 (94) Q Consensus 63 hdalwdia-------katsalvflygasllcktii 90 (94) -.-||||. |..+.++..|-+..|.|--+ T Consensus 267 Sp~L~dIS~~v~~W~KV~~GliKMY~~EVL~KfpV 301 (323) T 2ixo_A 267 SPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPV 301 (323) T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCHHH T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 77889887417991789999999999997316872 No 6 >1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegenerative diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D* 1h4l_D Probab=8.20 E-value=52 Score=13.93 Aligned_cols=28 Identities=50% Similarity=0.871 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH Q ss_conf 266666789988777555-58999972778876565 Q gi|254780986|r 56 LLLLQGIHDALWDIAKAT-SALVFLYGASLLCKTII 90 (94) Q Consensus 56 llllqgihdalwdiakat-salvflygasllcktii 90 (94) -|||||-.| +|--+ ..+||+| +||+..+ T Consensus 85 SLLLQGWQD----~~FI~PaNvVFvY---mL~Re~v 113 (208) T 1unl_D 85 SLLLQGWQD----QGFITPANVVFLY---MLCRDVI 113 (208) T ss_dssp HHHHTTSCS----SCSCCHHHHHHHH---HHHHHHS T ss_pred HHHHHHHHH----CCCCCCCCEEEHH---HHHHHHC T ss_conf 998710013----1554764232129---9898764 No 7 >1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2 Probab=7.05 E-value=1.1e+02 Score=12.19 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=10.0 Q ss_pred CCCCCCCHHHHHHHHHHHH Q ss_conf 7654274226666678998 Q gi|254780986|r 48 GSMKKDPTLLLLQGIHDAL 66 (94) Q Consensus 48 gsmkkdptllllqgihdal 66 (94) ||.--.|. ..|.||||- T Consensus 8 gsllmtpp--viqaihdaq 24 (26) T 1g92_A 8 GSLLMTPP--VIQAIHDAQ 24 (26) T ss_dssp HTCSSSCC--TTTHHHHHH T ss_pred HHHHCCCH--HHHHHHHHH T ss_conf 87753728--999987751 No 8 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=6.27 E-value=1.3e+02 Score=11.64 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9863427899999999 Q gi|254780986|r 9 WMAGIGCLGISIALVY 24 (94) Q Consensus 9 wmagigclgisialvy 24 (94) .-.|-||++|+++.-+ T Consensus 116 lgtGsG~I~i~la~~~ 131 (276) T 2b3t_A 116 LGTGTGAIALALASER 131 (276) T ss_dssp ETCTTSHHHHHHHHHC T ss_pred ECCCCHHHHHHHHHHC T ss_conf 1465329999999868 No 9 >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Probab=4.86 E-value=39 Score=14.61 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=18.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97541568986342789999999999999999765644433553 Q gi|254780986|r 1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAF 44 (94) Q Consensus 1 mnslplfgwmagigclgisialvylyihqhfkkrtkqkkvdiaf 44 (94) |.|-|.|-- -.|.|+|+|-......-.--|||.-.| T Consensus 1 mkstpffyp--------eaivl~y~ydnegiatydlykkvna~f 36 (99) T 1tbx_A 1 MKSTPFFYP--------EAIVLAYLYDNEGIATYDLYKKVNAEF 36 (99) T ss_dssp --CCSSBCH--------HHHHHHHHTTCTTCBHHHHHHHHHTTS T ss_pred CCCCCCCCC--------CCEEEEEEECCCCEEHHHHHHHHCCCC T ss_conf 988875581--------116889996488821142787745668 No 10 >1jdp_H CNP, C-type natriuretic peptide; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} Probab=4.61 E-value=93 Score=12.50 Aligned_cols=12 Identities=50% Similarity=1.063 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHH Q ss_conf 415689863427 Q gi|254780986|r 4 LPLFGWMAGIGC 15 (94) Q Consensus 4 lplfgwmagigc 15 (94) |.-.|-|.|.|| T Consensus 11 ldrig~msglgc 22 (26) T 1jdp_H 11 LDRIGSMSGLGC 22 (26) T ss_pred ECCEECCCCCCC T ss_conf 402103335463 Done!