Query         gi|254780986|ref|YP_003065399.1| hypothetical protein CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 94
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:05:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780986.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jx0_A ARF GTPase-activating p  50.0      13 0.00054   17.3   3.4   25   56-80    105-129 (135)
  2 1zw2_B Talin, metavinculin; co  27.5      25   0.001   15.7   1.9   18   63-80      2-19  (26)
  3 3cm8_B Peptide from RNA-direct  19.7      14 0.00059   17.1  -0.6   14   47-60      3-16  (30)
  4 1afo_A Glycophorin A; integral   9.1      82  0.0034   12.8   0.8   10    4-13     14-23  (40)
  5 2ixo_A Serine/threonine-protei   8.3   1E+02  0.0044   12.2   1.8   28   63-90    267-301 (323)
  6 1unl_D Cyclin-dependent kinase   8.2      52  0.0022   13.9  -0.5   28   56-90     85-113 (208)
  7 1g92_A Poneratoxin, PAC-TX; ne   7.0 1.1E+02  0.0044   12.2   0.7   17   48-66      8-24  (26)
  8 2b3t_A Protein methyltransfera   6.3 1.3E+02  0.0056   11.6   1.1   16    9-24    116-131 (276)
  9 1tbx_A ORF F-93, hypothetical    4.9      39  0.0016   14.6  -2.6   36    1-44      1-36  (99)
 10 1jdp_H CNP, C-type natriuretic   4.6      93  0.0039   12.5  -0.8   12    4-15     11-22  (26)

No 1  
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=49.96  E-value=13  Score=17.35  Aligned_cols=25  Identities=40%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2666667899887775555899997
Q gi|254780986|r   56 LLLLQGIHDALWDIAKATSALVFLY   80 (94)
Q Consensus        56 llllqgihdalwdiakatsalvfly   80 (94)
                      -++.|.+-+.-+|||||+--||-+.
T Consensus       105 q~~tqqVi~cAydIAkAaK~LVT~~  129 (135)
T 2jx0_A          105 QLLTQQVIQCAYDIAKAAKQLVTIT  129 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999997887452


No 2  
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Probab=27.46  E-value=25  Score=15.75  Aligned_cols=18  Identities=50%  Similarity=0.283  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899887775555899997
Q gi|254780986|r   63 HDALWDIAKATSALVFLY   80 (94)
Q Consensus        63 hdalwdiakatsalvfly   80 (94)
                      -+|--.||.||||||---
T Consensus         2 leaaksiaaatsalvkaa   19 (26)
T 1zw2_B            2 LEAAKSIAAATSALVKAA   19 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             078998999999999998


No 3  
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=19.66  E-value=14  Score=17.13  Aligned_cols=14  Identities=57%  Similarity=0.895  Sum_probs=12.0

Q ss_pred             CCCCCCCCHHHHHH
Q ss_conf             37654274226666
Q gi|254780986|r   47 KGSMKKDPTLLLLQ   60 (94)
Q Consensus        47 kgsmkkdptllllq   60 (94)
                      -|||.-.||||.|.
T Consensus         3 lgsmdvnptllflk   16 (30)
T 3cm8_B            3 LGSMDVNPTLLFLK   16 (30)
T ss_pred             CCCCCCCCEEEEEE
T ss_conf             55333586789996


No 4  
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=9.10  E-value=82  Score=12.82  Aligned_cols=10  Identities=60%  Similarity=1.052  Sum_probs=7.8

Q ss_pred             CHHHHHHHHH
Q ss_conf             4156898634
Q gi|254780986|r    4 LPLFGWMAGI   13 (94)
Q Consensus         4 lplfgwmagi   13 (94)
                      |-.||-|||+
T Consensus        14 lii~gvmagv   23 (40)
T 1afo_A           14 LIIFGVMAGV   23 (40)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999989


No 5  
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=8.33  E-value=1e+02  Score=12.22  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             89988777-------55558999972778876565
Q gi|254780986|r   63 HDALWDIA-------KATSALVFLYGASLLCKTII   90 (94)
Q Consensus        63 hdalwdia-------katsalvflygasllcktii   90 (94)
                      -.-||||.       |..+.++..|-+..|.|--+
T Consensus       267 Sp~L~dIS~~v~~W~KV~~GliKMY~~EVL~KfpV  301 (323)
T 2ixo_A          267 SPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPV  301 (323)
T ss_dssp             CHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             77889887417991789999999999997316872


No 6  
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegenerative diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D* 1h4l_D
Probab=8.20  E-value=52  Score=13.93  Aligned_cols=28  Identities=50%  Similarity=0.871  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             266666789988777555-58999972778876565
Q gi|254780986|r   56 LLLLQGIHDALWDIAKAT-SALVFLYGASLLCKTII   90 (94)
Q Consensus        56 llllqgihdalwdiakat-salvflygasllcktii   90 (94)
                      -|||||-.|    +|--+ ..+||+|   +||+..+
T Consensus        85 SLLLQGWQD----~~FI~PaNvVFvY---mL~Re~v  113 (208)
T 1unl_D           85 SLLLQGWQD----QGFITPANVVFLY---MLCRDVI  113 (208)
T ss_dssp             HHHHTTSCS----SCSCCHHHHHHHH---HHHHHHS
T ss_pred             HHHHHHHHH----CCCCCCCCEEEHH---HHHHHHC
T ss_conf             998710013----1554764232129---9898764


No 7  
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=7.05  E-value=1.1e+02  Score=12.19  Aligned_cols=17  Identities=47%  Similarity=0.767  Sum_probs=10.0

Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q ss_conf             7654274226666678998
Q gi|254780986|r   48 GSMKKDPTLLLLQGIHDAL   66 (94)
Q Consensus        48 gsmkkdptllllqgihdal   66 (94)
                      ||.--.|.  ..|.||||-
T Consensus         8 gsllmtpp--viqaihdaq   24 (26)
T 1g92_A            8 GSLLMTPP--VIQAIHDAQ   24 (26)
T ss_dssp             HTCSSSCC--TTTHHHHHH
T ss_pred             HHHHCCCH--HHHHHHHHH
T ss_conf             87753728--999987751


No 8  
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=6.27  E-value=1.3e+02  Score=11.64  Aligned_cols=16  Identities=19%  Similarity=0.337  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9863427899999999
Q gi|254780986|r    9 WMAGIGCLGISIALVY   24 (94)
Q Consensus         9 wmagigclgisialvy   24 (94)
                      .-.|-||++|+++.-+
T Consensus       116 lgtGsG~I~i~la~~~  131 (276)
T 2b3t_A          116 LGTGTGAIALALASER  131 (276)
T ss_dssp             ETCTTSHHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHHC
T ss_conf             1465329999999868


No 9  
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=4.86  E-value=39  Score=14.61  Aligned_cols=36  Identities=36%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97541568986342789999999999999999765644433553
Q gi|254780986|r    1 MNSLPLFGWMAGIGCLGISIALVYLYIHQHFKKRTKQKKVDIAF   44 (94)
Q Consensus         1 mnslplfgwmagigclgisialvylyihqhfkkrtkqkkvdiaf   44 (94)
                      |.|-|.|--        -.|.|+|+|-......-.--|||.-.|
T Consensus         1 mkstpffyp--------eaivl~y~ydnegiatydlykkvna~f   36 (99)
T 1tbx_A            1 MKSTPFFYP--------EAIVLAYLYDNEGIATYDLYKKVNAEF   36 (99)
T ss_dssp             --CCSSBCH--------HHHHHHHHTTCTTCBHHHHHHHHHTTS
T ss_pred             CCCCCCCCC--------CCEEEEEEECCCCEEHHHHHHHHCCCC
T ss_conf             988875581--------116889996488821142787745668


No 10 
>1jdp_H CNP, C-type natriuretic peptide; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=4.61  E-value=93  Score=12.50  Aligned_cols=12  Identities=50%  Similarity=1.063  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             415689863427
Q gi|254780986|r    4 LPLFGWMAGIGC   15 (94)
Q Consensus         4 lplfgwmagigc   15 (94)
                      |.-.|-|.|.||
T Consensus        11 ldrig~msglgc   22 (26)
T 1jdp_H           11 LDRIGSMSGLGC   22 (26)
T ss_pred             ECCEECCCCCCC
T ss_conf             402103335463


Done!