RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780986|ref|YP_003065399.1| hypothetical protein
CLIBASIA_04435 [Candidatus Liberibacter asiaticus str. psy62]
         (94 letters)



>gnl|CDD|150505 pfam09843, DUF2070, Predicted membrane protein (DUF2070).  This
          domain of unknown function is found in various
          bacterial hypothetical proteins, as well as in
          prokaryotic polyketide synthase.
          Length = 179

 Score = 26.9 bits (60), Expect = 1.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 2  NSLPLFGWMAGIGCLGISIALV 23
           + P  G   G+G LGI  A+V
Sbjct: 47 EAEPFLGEHEGLGPLGIQAAVV 68


>gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
           Provisional.
          Length = 513

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 72  ATSALVFLYGASLL 85
           A S+ +FLYG+SLL
Sbjct: 171 AASSAIFLYGSSLL 184


>gnl|CDD|177812 PLN02151, PLN02151, trehalose-phosphatase.
          Length = 354

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 30  HFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQG 61
           HF+   + K  D+A + +  +K  P L+L QG
Sbjct: 225 HFRCVEENKWSDLANQVRSVLKNYPKLMLTQG 256


>gnl|CDD|149676 pfam08695, DUF1783, Fungal protein of unknown function (DUF1783).
           This is a fungal family of uncharacterized proteins.
          Length = 125

 Score = 24.9 bits (55), Expect = 4.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 16 LGISIALVYLYIHQHFKKRTKQKKVDIAFKKKGS 49
          LG +I     +     +    Q ++DI+F  KGS
Sbjct: 47 LGDNIDFKSSWPWISGELNQVQGRIDISFSVKGS 80


>gnl|CDD|172381 PRK13860, PRK13860, type IV secretion system protein VirB5;
           Provisional.
          Length = 220

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 57  LLLQGIHDALWDIAKATSAL 76
           LLL+ IHDA+    +ATS L
Sbjct: 168 LLLKQIHDAIIQNVQATSLL 187


>gnl|CDD|151515 pfam11070, DUF2871, Protein of unknown function (DUF2871).  This
           family of proteins has no known function.
          Length = 131

 Score = 24.9 bits (55), Expect = 4.8
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 5   PLFGWMAGIGCLGISIALVYLYI 27
                +AGIG + +++ L+  ++
Sbjct: 103 KALSGIAGIGHILLTVGLILFFL 125


>gnl|CDD|178591 PLN03017, PLN03017, trehalose-phosphatase.
          Length = 366

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 30  HFKKRTKQKKVDIAFKKKGSMKKDPTLLLLQG 61
           HF+   ++K  ++  + +  +K  PTL L QG
Sbjct: 239 HFRCVDEKKWSELVLQVRSVLKNFPTLKLTQG 270


>gnl|CDD|162256 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase.  This enzyme
           catalyzes the first step of the mevalonate pathway of
           IPP biosynthesis. Most bacteria do not use this pathway,
           but rather the deoxyxylulose pathway.
          Length = 652

 Score = 24.1 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 64  DALWDIAKATSALVFLYGASLL 85
           + LWDIA+ T A +F   A  +
Sbjct: 346 NVLWDIAERTGATLFGTSAKYV 367


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0750    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,495,471
Number of extensions: 78671
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 21
Length of query: 94
Length of database: 5,994,473
Length adjustment: 62
Effective length of query: 32
Effective length of database: 4,654,777
Effective search space: 148952864
Effective search space used: 148952864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.0 bits)