Query gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 22 out of 24
Neff 3.0
Searched_HMMs 33803
Date Wed Jun 1 20:01:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780987.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3b73_A PHIH1 repressor-like p 92.7 0.16 4.8E-06 29.0 4.3 58 20-80 24-84 (111)
2 >3hrs_A Metalloregulator SCAR; 91.1 0.29 8.6E-06 27.7 4.0 58 19-79 16-74 (138)
3 >3cta_A Riboflavin kinase; str 91.0 0.17 5E-06 28.9 2.8 74 4-79 8-84 (91)
4 >2h09_A Transcriptional regula 89.8 0.3 8.9E-06 27.6 3.2 54 20-76 51-105 (155)
5 >1on2_A Transcriptional regula 89.3 0.36 1.1E-05 27.1 3.3 55 20-77 19-74 (142)
6 >2qq9_A Diphtheria toxin repre 88.3 0.66 1.9E-05 25.7 4.1 57 20-79 21-78 (146)
7 >2bv6_A MGRA, HTH-type transcr 88.0 0.5 1.5E-05 26.4 3.3 70 7-76 3-76 (76)
8 >3cjn_A Transcriptional regula 84.5 0.45 1.3E-05 26.6 1.6 70 5-76 1-76 (78)
9 >2fa5_A Transcriptional regula 80.7 0.93 2.7E-05 24.9 2.0 75 5-79 45-123 (134)
10 >3jw4_A Transcriptional regula 80.4 2.6 7.6E-05 22.5 4.2 61 18-78 26-90 (101)
11 >2rhq_B Phenylalanyl-tRNA synt 80.3 2 5.9E-05 23.1 3.6 49 15-66 27-75 (108)
12 >3bpv_A Transcriptional regula 79.3 0.95 2.8E-05 24.9 1.7 73 5-79 25-103 (114)
13 >3cdh_A Transcriptional regula 78.7 1.5 4.4E-05 23.8 2.5 73 5-79 9-87 (103)
14 >1ub9_A Hypothetical protein P 78.0 4.4 0.00013 21.2 4.8 58 20-79 27-90 (100)
15 >3ech_A MEXR, multidrug resist 78.0 1.7 5.1E-05 23.4 2.7 74 6-79 34-111 (122)
16 >3hsr_A HTH-type transcription 77.4 1.6 4.8E-05 23.6 2.4 75 5-79 32-110 (119)
17 >1jgs_A Multiple antibiotic re 77.2 1.3 3.9E-05 24.1 1.9 72 6-79 31-108 (122)
18 >1lj9_A Transcriptional regula 75.3 6.7 0.0002 20.3 5.2 58 20-79 13-76 (87)
19 >3k0l_A Repressor protein; hel 75.1 3.3 9.8E-05 21.9 3.5 70 10-79 47-120 (131)
20 >2qww_A Transcriptional regula 75.1 1.5 4.4E-05 23.8 1.7 72 6-79 38-117 (131)
21 >2fxa_A Protease production re 74.2 2.4 7.2E-05 22.7 2.6 58 20-79 15-78 (81)
22 >2hr3_A Probable transcription 74.2 3.4 9.9E-05 21.9 3.3 59 19-79 17-81 (94)
23 >1fx7_A Iron-dependent repress 73.9 4.9 0.00014 21.0 4.1 53 20-77 21-76 (141)
24 >2o0y_A Transcriptional regula 73.6 5.2 0.00015 20.8 4.2 56 19-77 34-90 (95)
25 >3bdd_A Regulatory protein MAR 73.5 2.8 8.4E-05 22.3 2.8 53 20-74 13-71 (73)
26 >3deu_A Transcriptional regula 73.2 2.1 6.3E-05 23.0 2.1 74 4-79 48-128 (139)
27 >3bj6_A Transcriptional regula 72.9 2 5.9E-05 23.1 1.9 73 5-79 36-114 (125)
28 >2gxg_A 146AA long hypothetica 72.3 5.2 0.00015 20.9 3.9 58 21-78 48-109 (121)
29 >2frh_A SARA, staphylococcal a 71.5 3.8 0.00011 21.6 3.1 75 5-79 33-113 (127)
30 >3e6m_A MARR family transcript 71.4 1.3 4E-05 24.0 0.8 72 5-78 49-126 (138)
31 >1z4h_A TORI, TOR inhibition p 71.1 7.5 0.00022 20.0 4.5 64 16-86 3-66 (66)
32 >3g3z_A NMB1585, transcription 70.6 5.5 0.00016 20.7 3.7 58 20-79 13-76 (91)
33 >2rdp_A Putative transcription 70.2 2.2 6.4E-05 22.9 1.6 72 6-79 39-116 (127)
34 >1xmk_A Double-stranded RNA-sp 70.2 3 8.8E-05 22.2 2.3 50 20-72 22-75 (79)
35 >2w48_A Sorbitol operon regula 69.8 4.1 0.00012 21.4 3.0 26 22-49 20-45 (54)
36 >2fbk_A Transcriptional regula 69.0 4.6 0.00014 21.1 3.1 59 21-79 84-146 (157)
37 >3bja_A Transcriptional regula 67.9 6 0.00018 20.5 3.5 73 5-77 29-105 (118)
38 >1yg2_A Gene activator APHA; v 67.3 4.3 0.00013 21.3 2.6 59 24-82 16-88 (89)
39 >3eco_A MEPR; mutlidrug efflux 67.1 3.1 9.2E-05 22.1 1.9 62 16-79 40-107 (119)
40 >2heo_A Z-DNA binding protein 65.7 3.4 1E-04 21.9 1.8 42 23-66 25-66 (67)
41 >2eth_A Transcriptional regula 64.9 3 9E-05 22.1 1.5 72 6-79 41-118 (130)
42 >2fbi_A Probable transcription 63.6 4.7 0.00014 21.1 2.3 55 20-76 13-73 (75)
43 >1u78_A TC3 transposase, trans 62.6 9.5 0.00028 19.4 3.7 49 20-70 21-69 (88)
44 >3boq_A Transcriptional regula 61.4 13 0.00039 18.7 4.2 61 19-79 58-122 (133)
45 >1z91_A Organic hydroperoxide 61.3 2.1 6.4E-05 22.9 0.2 67 6-74 4-76 (78)
46 >3df8_A Possible HXLR family t 59.8 15 0.00043 18.4 4.4 51 25-77 22-75 (89)
47 >3eyi_A Z-DNA-binding protein 59.7 3.2 9.3E-05 22.0 0.8 47 22-69 23-70 (72)
48 >1hsj_A Fusion protein consist 58.7 7 0.00021 20.2 2.4 60 18-79 15-80 (87)
49 >3f3x_A Transcriptional regula 58.6 8.6 0.00025 19.7 2.9 57 21-79 48-110 (122)
50 >2ict_A Antitoxin HIGA; helix- 58.5 13 0.00038 18.7 3.8 29 9-48 16-44 (46)
51 >1p4x_A Staphylococcal accesso 58.2 5 0.00015 20.9 1.6 60 17-78 13-78 (95)
52 >3fm5_A Transcriptional regula 58.1 4.2 0.00012 21.4 1.2 72 6-79 36-114 (124)
53 >1t1e_A Kumamolisin; proenzyme 57.8 12 0.00034 19.0 3.4 50 11-60 22-73 (93)
54 >1gdt_A GD resolvase, protein 57.6 11 0.00031 19.2 3.2 26 22-49 16-41 (42)
55 >2p8t_A Hypothetical protein P 57.5 12 0.00036 18.9 3.5 47 21-73 28-77 (200)
56 >1mkm_A ICLR transcriptional r 56.7 9.2 0.00027 19.5 2.8 52 7-65 11-63 (64)
57 >1sfx_A Conserved hypothetical 55.8 12 0.00036 18.9 3.3 29 22-52 15-46 (64)
58 >2pex_A Transcriptional regula 54.6 9.4 0.00028 19.5 2.5 51 19-71 14-70 (71)
59 >2d1h_A ST1889, 109AA long hyp 54.0 6.9 0.0002 20.2 1.8 73 5-79 17-96 (109)
60 >2kfs_A Conserved hypothetical 53.8 16 0.00046 18.3 3.6 39 18-59 26-64 (75)
61 >1qbj_A Protein (double-strand 53.8 16 0.00047 18.2 3.6 47 21-69 25-73 (81)
62 >1b7y_B Phers, protein (phenyl 52.3 20 0.00058 17.7 5.1 46 18-66 25-70 (103)
63 >3edy_A Tripeptidyl-peptidase 51.9 19 0.00056 17.8 3.7 72 9-81 45-118 (168)
64 >2cxi_A Phenylalanyl-tRNA synt 51.7 16 0.00048 18.2 3.4 36 20-55 4-39 (71)
65 >1s3j_A YUSO protein; structur 51.2 6.4 0.00019 20.4 1.2 72 6-79 34-111 (122)
66 >1z7u_A Hypothetical protein E 51.0 21 0.00061 17.6 4.8 54 22-76 34-93 (112)
67 >2dql_A PEX protein; circadian 50.8 11 0.00032 19.1 2.4 63 21-83 20-96 (102)
68 >2esh_A Conserved hypothetical 50.5 11 0.00032 19.1 2.3 61 23-83 26-100 (118)
69 >2fsw_A PG_0823 protein; alpha 49.4 22 0.00065 17.5 4.7 55 21-76 36-96 (107)
70 >1pdn_C Protein (PRD paired); 47.7 22 0.00066 17.4 3.5 25 22-48 16-40 (53)
71 >3cec_A Putative antidote prot 44.6 26 0.00077 17.0 3.8 22 24-47 32-53 (56)
72 >3hot_A Transposable element m 44.1 27 0.00079 17.0 3.8 32 19-52 17-48 (52)
73 >3f6v_A Possible transcription 43.8 27 0.0008 17.0 3.5 54 21-76 69-125 (131)
74 >2g7u_A Transcriptional regula 43.5 25 0.00075 17.1 3.3 46 19-68 25-71 (75)
75 >2f2e_A PA1607; transcription 42.6 28 0.00083 16.9 5.0 47 21-69 35-86 (86)
76 >1vz0_A PARB, chromosome parti 42.5 26 0.00076 17.1 3.2 25 21-47 33-57 (59)
77 >1ku9_A Hypothetical protein M 41.3 22 0.00064 17.5 2.7 60 6-67 23-88 (88)
78 >1sfu_A 34L protein; protein/Z 39.9 29 0.00087 16.8 3.2 29 19-49 25-53 (75)
79 >1qgp_A Protein (double strand 39.6 20 0.00058 17.7 2.2 45 22-68 30-76 (77)
80 >1xma_A Predicted transcriptio 39.1 15 0.00045 18.3 1.6 60 24-83 55-128 (145)
81 >2o3f_A Putative HTH-type tran 38.4 22 0.00064 17.5 2.3 33 18-52 34-66 (111)
82 >2zkz_A Transcriptional repres 37.9 31 0.00091 16.7 3.0 54 21-74 39-92 (99)
83 >1r71_A Transcriptional repres 37.8 28 0.00082 16.9 2.8 25 21-47 50-74 (76)
84 >2hzt_A Putative HTH-type tran 37.7 34 0.001 16.4 4.7 48 21-69 25-78 (78)
85 >3iwf_A Transcription regulato 35.8 27 0.00079 17.0 2.4 34 17-52 29-62 (74)
86 >1ixc_A CBNR, LYSR-type regula 34.3 37 0.0011 16.2 3.0 52 23-78 15-70 (88)
87 >1ku3_A Sigma factor SIGA; hel 33.5 40 0.0012 16.0 3.7 30 20-51 27-56 (73)
88 >3f6o_A Probable transcription 32.5 41 0.0012 16.0 3.6 57 21-79 29-88 (118)
89 >3f8b_A Transcriptional regula 31.9 29 0.00084 16.8 2.1 60 24-83 26-99 (116)
90 >3elk_A Putative transcription 31.6 22 0.00064 17.5 1.4 53 25-77 29-93 (94)
91 >3fxq_A LYSR type regulator of 31.5 42 0.0012 15.9 2.9 50 23-76 16-69 (91)
92 >1tw3_A COMT, carminomycin 4-O 29.8 46 0.0014 15.7 2.9 45 21-70 21-68 (80)
93 >1tty_A Sigma-A, RNA polymeras 28.4 49 0.0014 15.6 3.7 27 22-50 37-63 (87)
94 >2zfw_A PEX; five alpha-helice 27.2 33 0.00097 16.5 1.7 61 24-84 23-97 (113)
95 >2vxz_A Pyrsv_GP04; viral prot 27.2 52 0.0015 15.4 4.0 47 21-69 22-71 (165)
96 >3cuo_A Uncharacterized HTH-ty 27.0 52 0.0015 15.4 5.4 51 20-72 26-79 (90)
97 >2e1n_A PEX, period extender; 26.6 33 0.00097 16.5 1.6 61 24-84 23-97 (113)
98 >3hhh_A Transcriptional regula 25.9 39 0.0012 16.1 1.9 60 22-81 25-96 (116)
99 >2q1f_A Chondroitinase; alpha 25.8 11 0.00033 19.0 -0.9 22 70-95 31-52 (114)
100 >2nnn_A Probable transcription 25.5 17 0.00052 18.0 0.1 37 20-56 15-52 (65)
101 >2k27_A Paired box protein PAX 25.1 57 0.0017 15.2 2.8 25 22-48 40-64 (75)
102 >1u2w_A CADC repressor, cadmiu 24.8 57 0.0017 15.2 5.0 59 20-80 26-87 (95)
103 >1bia_A BIRA bifunctional prot 24.1 59 0.0018 15.1 3.8 35 19-55 15-52 (64)
104 >2jsc_A Transcriptional regula 23.5 61 0.0018 15.0 2.6 56 21-78 32-90 (118)
105 >3i4p_A Transcriptional regula 23.2 62 0.0018 15.0 4.0 27 20-48 14-40 (53)
106 >1yyv_A Putative transcription 22.8 63 0.0019 15.0 4.3 53 22-75 47-105 (131)
107 >1ji8_A Dissimilatory siroheme 21.3 59 0.0017 15.1 2.1 18 93-110 29-46 (46)
108 >2p4w_A Transcriptional regula 20.6 70 0.0021 14.7 3.2 46 21-68 26-74 (77)
No 1
>>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:)
Probab=92.73 E-value=0.16 Score=29.04 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCC
Q ss_conf 5765189999998777889899999---999879812202577532011611356445642010
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTG 80 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~ 80 (110)
+.+..+|.+|.+.+|-..|..+|.+ .|.+.||- -+.++..|++|++|.++-.-+.+.-
T Consensus 24 ~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L~~~GLv---e~~~~g~Y~lT~~G~~~L~~~lda~ 84 (111)
T 3b73_A 24 EEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLL---QPLANGVYVITEEGEAYLNGEYDAG 84 (111)
T ss_dssp HHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSE---EECSTTCEEECHHHHHHHTTCEETT
T ss_pred HCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC---CCCCCCCEEECHHHHHHHHCCCCCC
T ss_conf 737888889886136683388999999999977875---5379970671770899973410212
No 2
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=91.09 E-value=0.29 Score=27.68 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 657651899999987778-8989999999987981220257753201161135644564201
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110)
.+.+..++++|.++||-. .+...+=+.|.+.||-... -++...+|++|++....+...
T Consensus 16 ~~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~~~---r~~~v~lT~~G~~~~~~~~~~ 74 (138)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVSDLYRK 74 (138)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC---CCCCEEECHHHHHHHHHHHHH
T ss_conf 34998759999999789928999999999988997863---895189878799999999999
No 3
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=91.05 E-value=0.17 Score=28.93 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=54.7
Q ss_pred HHCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 01223366515888765765189999998777889899999---99987981220257753201161135644564201
Q gi|254780987|r 4 VLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 4 ~~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110)
-.|.+..|..-|-+=.+.+..+.++|.+.++ ++--.|.+ .|.+.||-......-++.+.+|++|++....+.+.
T Consensus 8 ~~~l~~~~~~iL~~i~~~~~~t~~ela~~l~--i~~~~vs~~i~~L~~~gli~r~~D~R~~~i~lT~~G~~~~~~~~~~ 84 (91)
T 3cta_A 8 QYYRAIKKIKEAAEASNRAYLTSSKLADMLG--ISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFAD 84 (91)
T ss_dssp HHHHHHHHHHHHTTTSSEEECCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHHHHHHHHH
T ss_conf 9999999999856404799838999999988--7887999999999988998997349833344898899999999999
No 4
>>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:)
Probab=89.81 E-value=0.3 Score=27.59 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH
Q ss_conf 576518999999877-788989999999987981220257753201161135644564
Q gi|254780987|r 20 NLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110)
+.+..+.++|.+.|| .+.|....=+.|.+.||- .+..++.+.+|++|.+.....
T Consensus 51 ~~~~v~~~dlA~~l~vs~~tv~~~l~~L~~~Gli---~~~~~~~i~LT~~G~~~a~~~ 105 (155)
T 2h09_A 51 EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLI---EMIPWRGVFLTAEGEKLAQES 105 (155)
T ss_dssp HHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCE---EEETTTEEEECHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE---EECCCCCEEECHHHHHHHHHH
T ss_conf 2797739999988598857899999999769977---754987456637699999999
No 5
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=89.29 E-value=0.36 Score=27.14 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH
Q ss_conf 576518999999877-7889899999999879812202577532011611356445642
Q gi|254780987|r 20 NLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110)
+.+..+.++|.+.|| .+.|...+=+.|.+.||- ....+..+.+|++|++.+..+.
T Consensus 19 ~~~~v~~~diA~~l~Vs~~sV~~~i~~L~~~GlV---~~~~~~~v~LT~~G~~~a~~~~ 74 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYL---IYEKYRGLVLTSKGKKIGKRLV 74 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSE---EEETTTEEEECHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCCCCCCEEECHHHHHHHHHHH
T ss_conf 3899769999999698878999999999977996---5068986677678999999999
No 6
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=88.32 E-value=0.66 Score=25.74 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 576518999999877-788989999999987981220257753201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110)
+.+..+.++|.++|| .+.|...+=+.|.+.||- .+.-.+.+.+|++|++........
T Consensus 21 ~~~~v~~~elA~~l~vs~~svt~~i~rLe~~GlI---~~~~~~~i~lT~~G~~~~~~~~~~ 78 (146)
T 2qq9_A 21 EGVTPLRARIAERLEQSGPTVSQTVARMERDGLV---VVASDRSLQMTPTGRTLATAVMRK 78 (146)
T ss_dssp HTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSE---EECTTSBEEECHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 5997619999999789927999999999977995---205874477417689999999999
No 7
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=88.05 E-value=0.5 Score=26.40 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=46.5
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHH
Q ss_conf 2336651588876576518999999877-7889899999999879812202577-53--201161135644564
Q gi|254780987|r 7 VNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRY 76 (110)
Q Consensus 7 ~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~ 76 (110)
++..|-.-|-.=++.+-.++++|.+.++ .+.++-++-+.|.+.||-.....+. ++ .-.+||+|++....+
T Consensus 3 lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~i~r~~~~~D~R~~~i~lT~~g~~~~~~i 76 (76)
T 2bv6_A 3 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRXEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 76 (76)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 89999999999980799499999999798873799999999858988980068988867888898999999999
No 8
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=84.52 E-value=0.45 Score=26.62 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=47.3
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC---CCCCEEECHHHHHHHHHH
Q ss_conf 122336651588876576518999999877788989999---999987981220257---753201161135644564
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES---GRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~ 76 (110)
+|++..|..-|-+=.+.+..|+++|.+.++ +|--.++ +.|.+.||-...... -.+...+||+|++....+
T Consensus 1 ~gl~~~~~~iL~~l~~~g~~t~~ela~~~~--~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~i 76 (78)
T 3cjn_A 1 LGLSTAKXRALAILSAKDGLPIGTLGIFAV--VEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 76 (78)
T ss_dssp HTCCHHHHHHHHHHHHSCSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 695999999999998479989999999978--8833245889999998854011057777530100467799999999
No 9
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=80.70 E-value=0.93 Score=24.93 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=49.3
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCC-CCC--CEEECHHHHHHHHHHHHC
Q ss_conf 12233665158887657651899999987778-8989999999987981220257-753--201161135644564201
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHES-GRK--RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~-grk--ew~lT~~G~k~g~~~~dt 79 (110)
.|++..|-.-|-.=.+.+..++++|++.++-. .+.-++-+.|.+.||-.....+ .++ .-.+||+|++.-..+..-
T Consensus 45 ~~~t~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~~Le~~Glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~~~ 123 (134)
T 2fa5_A 45 YGXAIPEWRVITILALYPGSSASEVSDRTAXDKVAVSRAVARLLERGFIRRETHGDDRRRSXLALSPAGRQVYETVAPL 123 (134)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 1999999999999985899799999999884888999999998318825330567664112554059899999999999
No 10
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=80.39 E-value=2.6 Score=22.51 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHH
Q ss_conf 76576518999999877-7889899999999879812202577--5-320116113564456420
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~d 78 (110)
-+.++-.|+++|++.++ .+.+.-++-+.|...||-.....+. | ....+||+|++....+..
T Consensus 26 ~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 90 (101)
T 3jw4_A 26 ENQESGIIQKDLAQFFGRRGASITSXLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 90 (101)
T ss_dssp HHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 08999979999999989788589999999998889631577788886044789889999999999
No 11
>>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* (B:170-196,B:403-483)
Probab=80.27 E-value=2 Score=23.12 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEC
Q ss_conf 8887657651899999987778898999999998798122025775320116
Q gi|254780987|r 15 LPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66 (110)
Q Consensus 15 LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT 66 (110)
-|-....-.+++..+.+.+|..++...+-++|...||+.+. ..+.|..+
T Consensus 27 ~~~~~~~I~l~~~~i~klLG~~is~e~i~~iL~rLgf~v~~---~~d~~~V~ 75 (108)
T 2rhq_B 27 SGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTL---KGETLTVN 75 (108)
T ss_dssp CCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE---ETTEEEEE
T ss_pred CCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---CCCEEEEE
T ss_conf 23421000130899986528986410246899852331322---69769998
No 12
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=79.26 E-value=0.95 Score=24.87 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=48.8
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHH
Q ss_conf 122336651588876576518999999877788989999---9999879812202577-53--20116113564456420
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~d 78 (110)
.|++..|-.-|-.=.+.+-+|+++|+++++ ++.-.++ +.|.+.||-.....+. ++ .-.+|++|++....+..
T Consensus 25 ~~lt~~q~~iL~~l~~~~~~t~~~la~~~~--~~~~~vs~~i~~L~~~gli~r~~~~~DkR~~~i~LT~~G~~~~~~~~~ 102 (114)
T 3bpv_A 25 LNLTDAQVACLLRIHREPGIKQDELATFFH--VDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILK 102 (114)
T ss_dssp GTCCHHHHHHHHHHHHSTTCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 797999999999998589989999999989--698899999999996898686115899885787889899999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
-
T Consensus 103 ~ 103 (114)
T 3bpv_A 103 V 103 (114)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 13
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=78.66 E-value=1.5 Score=23.82 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=47.5
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHHH
Q ss_conf 1223366515888765765189999998777889899---99999987981220257--75-320116113564456420
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~d 78 (110)
.|++..|-.-|-.=.+.+-.++++|.+.++ ++.-. +-+.|...||-.....+ +| +...+|++|++....+..
T Consensus 9 ~~l~~~~~~iL~~i~~~~~~t~~~la~~~~--~~~~~vsr~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 86 (103)
T 3cdh_A 9 QGLRVPEWRVLACLVDNDAXXITRLAKLSL--XEQSRXTRIVDQXDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVA 86 (103)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCCCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 397999999999998188959999999968--886436556999872224354236788861688877608999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
.
T Consensus 87 ~ 87 (103)
T 3cdh_A 87 S 87 (103)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 14
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=78.05 E-value=4.4 Score=21.25 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC---CCCCEEECHHHHHHHHHHHHC
Q ss_conf 5765189999998777889899999---99987981220257---753201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES---GRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~~dt 79 (110)
+.+-.++++|.++++ +|.-.++. .|.+.||-...... -++.+.+||+|.+....+...
T Consensus 27 ~~~~~t~~eLa~~~~--i~~~~~s~~l~~L~~~GlV~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 90 (100)
T 1ub9_A 27 PRRKAPFSQIQKVLD--LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSS 90 (100)
T ss_dssp HHSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH--HCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 678961999999885--2687441999986421248888767667542022689999999999999
No 15
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=77.98 E-value=1.7 Score=23.44 Aligned_cols=74 Identities=11% Similarity=0.000 Sum_probs=47.0
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877788-9899999999879812202577---53201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKP-SAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~-SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110)
|++..|-.-|-.=.+.+-.++++|++.++-.. +.-++=+.|.+.||-....... .....+|++|++....+...
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 111 (122)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELI 111 (122)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 989999999999998799899999999793572699999999996132000167767413657888899999999999
No 16
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=77.36 E-value=1.6 Score=23.60 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=49.3
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCC--CCC-CEEECHHHHHHHHHHHHC
Q ss_conf 12233665158887657651899999987778-8989999999987981220257--753-201161135644564201
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHES--GRK-RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~--grk-ew~lT~~G~k~g~~~~dt 79 (110)
.|++..|-.-|-.=.+.+..|.++|.++++-. .++..+=+.|.+.||-...... .|. .-.+|++|+++...+...
T Consensus 32 ~~lt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 110 (119)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI 110 (119)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 5989999999999987799899999999896886899999999817956985437898757888898899999999999
No 17
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=77.23 E-value=1.3 Score=24.12 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=46.7
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHHHC
Q ss_conf 223366515888765765189999998777889899999---99987981220257-75--3201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~dt 79 (110)
|++..|-.-|-.=...+..++++|++.++ ++.-.+.+ .|.+.||-...... .+ ....+||+|.+....+...
T Consensus 31 ~lt~~~~~iL~~l~~~~~~t~~~la~~l~--i~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 108 (122)
T 1jgs_A 31 DITAAQFKVLCSIRCAACITPVELKKVLS--VDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQL 108 (122)
T ss_dssp TSCHHHHHHHHHHHHHSSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 97999999999998779989999999989--7886899999999868987984468888756888898899999999999
No 18
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=75.33 E-value=6.7 Score=20.25 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC
Q ss_conf 5765189999998777889899999---999879812202577-5--3201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110)
+.+..++++|.+.++ +|.-.+++ .|.+.||-....... + ....+|++|++....+...
T Consensus 13 ~~~~~t~~~la~~l~--~~~~~vs~~v~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 76 (87)
T 1lj9_A 13 ENPGIIQEKIAELIK--VDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRE 76 (87)
T ss_dssp HSTTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 389979999999989--7885899999999988996306799998911447898999999999999
No 19
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=75.13 E-value=3.3 Score=21.92 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=45.9
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC
Q ss_conf 665158887657651899999987778-89899999999879812202577---53201161135644564201
Q gi|254780987|r 10 LQDINLPTPNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 10 ~~~~~LP~~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110)
.|-.-|-.=.+.+-.|+++|.+.++-. .+.-++=+.|...||-....... .....+||+|++.-..+...
T Consensus 47 ~q~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~~L~~~GlV~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 120 (131)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQV 120 (131)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 99999999996799799999998588946489999999987984674347777137878777289999999999
No 20
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=75.09 E-value=1.5 Score=23.80 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCC--C--C-CCCEEECHHHHHHHHHHH
Q ss_conf 2233665158887657651899999987778898999---999998798122025--7--7-532011611356445642
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHE--S--G-RKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~--~--g-rkew~lT~~G~k~g~~~~ 77 (110)
|.+..|-.-|-.=.+.+-.+.++|.+.++ ++.-.| -+.|...||-..... + . .....+||+|++.-..+-
T Consensus 38 ~lt~~q~~iL~~i~~~~~~t~~~la~~l~--~~~s~vs~~i~~L~~~glV~r~~~~d~~D~R~~~i~LT~~G~~~~~~~~ 115 (131)
T 2qww_A 38 GLTIQQLAXINVIYSTPGISVADLTKRLI--ITGSSAAANVDGLISLGLVVKLNKTIPNDSXDLTLKLSKKGEDLSKRST 115 (131)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 99889999999999879989999999978--6446662665799987786523202356665224256778999999999
Q ss_pred HC
Q ss_conf 01
Q gi|254780987|r 78 DT 79 (110)
Q Consensus 78 dt 79 (110)
..
T Consensus 116 ~~ 117 (131)
T 2qww_A 116 AN 117 (131)
T ss_dssp SC
T ss_pred HH
T ss_conf 99
No 21
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=74.18 E-value=2.4 Score=22.66 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC---CCCCEEECHHHHHHHHHHHHC
Q ss_conf 5765189999998777889899999---99987981220257---753201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES---GRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~~dt 79 (110)
+.+..++++|++.++ ++.-.+++ .|.+.||-...... -.+...+||+|++....+...
T Consensus 15 ~~~~~t~~~la~~l~--~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 78 (81)
T 2fxa_A 15 QLNGASISEIAKFGV--XHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 78 (81)
T ss_dssp HHTSEEHHHHHHHTT--CCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 769958999999984--5755377999999987996565588777614878898999999999999
No 22
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=74.18 E-value=3.4 Score=21.89 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC
Q ss_conf 6576518999999877788989999---9999879812202577---53201161135644564201
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110)
++++-+++++|++.++ +|.-.+. +.|.+.||-.....+. ++.-.+|++|++....+...
T Consensus 17 ~~~~~~t~~~La~~~~--~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 81 (94)
T 2hr3_A 17 RLGGDVTPSELAAAER--XRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAK 81 (94)
T ss_dssp HTTSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7699989999999979--7988999999999866976864275400477623668899999999999
No 23
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=73.87 E-value=4.9 Score=21.02 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH
Q ss_conf 57651899999987778898999---99999879812202577532011611356445642
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110)
..+..+.++|.++|| +|..+| =+.|.+.||-... -++.-.+|++|++......
T Consensus 21 ~~~~v~~~eLA~~l~--vs~~tvt~~l~kLe~~glv~~~---~~~~v~lT~~g~~~~~~~~ 76 (141)
T 1fx7_A 21 EGVTPLRARIAERLD--QSGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALAIAVM 76 (141)
T ss_dssp HTSCCCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHC--CCCHHHHHHHHHHHHCCCEEEC---CCCCEEECHHHHHHHHHHH
T ss_conf 499751999999978--9916899999999879988973---9987788878999999999
No 24
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=73.60 E-value=5.2 Score=20.84 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHH
Q ss_conf 6576518999999877-7889899999999879812202577532011611356445642
Q gi|254780987|r 19 NNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110)
....-++.+||.+.+| ++.++-++=+-|.+.||- .+.+.+.|.+.++--.+|....
T Consensus 34 ~~~~~~~~~eia~~lgl~~st~~RlL~tL~~~G~v---~~~~~g~y~lG~~l~~l~~~~~ 90 (95)
T 2o0y_A 34 AAHPTRSLKELVEGTKLPKTTVVRLVATXCARSVL---TSRADGSYSLGPEXLRWVRLAG 90 (95)
T ss_dssp TTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSE---EECTTSCEEECHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE---EEECCCCCCCCCHHHHHHHHHH
T ss_conf 47999899999999792989999999999966908---9842555313818999987540
No 25
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=73.53 E-value=2.8 Score=22.29 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC---CCCCEEECHHHHHHHH
Q ss_conf 576518999999877788989999---999987981220257---7532011611356445
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES---GRKRDVLTPKGAKGGG 74 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~---grkew~lT~~G~k~g~ 74 (110)
+.+-.++++|.++++ ++.-.++ +.|.+.||-.....+ -++...+||+|++..+
T Consensus 13 ~~~~~~~~~la~~~~--~~~stvs~~i~~L~~~g~I~r~~~~~D~R~~~l~LT~~G~~~~~ 71 (73)
T 3bdd_A 13 KDAPLHQLALQERLQ--IDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALI 71 (73)
T ss_dssp HHCSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHT
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHH
T ss_conf 869989999999987--15758999999999778803252899998410127898999999
No 26
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=73.22 E-value=2.1 Score=22.97 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=47.3
Q ss_pred HHCCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHH
Q ss_conf 01223366515888-7657651899999987778898999---99999879812202577-5--3201161135644564
Q gi|254780987|r 4 VLGVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRY 76 (110)
Q Consensus 4 ~~~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~ 76 (110)
..|++..|-.-|-. -.+.+-.++++|.++++ ++.-.+ =+.|.+.||-....... + ..-.+||+|++.-..+
T Consensus 48 ~~gl~~~~~~iL~~l~~~~~~~t~~~La~~~~--i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 125 (139)
T 3deu_A 48 PLELTQTHWVTLHNIHQLPPDQSQIQLAKAIG--IEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (139)
T ss_dssp TTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHH
T ss_conf 76979999999999997698999999999989--6998999999999969887986206898757889898899999999
Q ss_pred HHC
Q ss_conf 201
Q gi|254780987|r 77 FDT 79 (110)
Q Consensus 77 ~dt 79 (110)
...
T Consensus 126 ~~~ 128 (139)
T 3deu_A 126 EEV 128 (139)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 27
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=72.86 E-value=2 Score=23.12 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=47.7
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH
Q ss_conf 122336651588876576518999999877788989999---9999879812202577---5320116113564456420
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110)
.|++..|-.-|-.=.+.+-.++++|.+.++ ++.-.+. +.|.+.||-....... .+...+||+|++....+..
T Consensus 36 ~~lt~~q~~iL~~l~~~~~~t~~~la~~~~--~~~~~vs~~i~~L~~~GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 113 (125)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQ--XKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRA 113 (125)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 698999999999999869989999999988--657589999999987065576552675510100256768999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
.
T Consensus 114 ~ 114 (125)
T 3bj6_A 114 D 114 (125)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 28
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=72.27 E-value=5.2 Score=20.86 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHH
Q ss_conf 765189999998777-889899999999879812202577-5--320116113564456420
Q gi|254780987|r 21 LPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~d 78 (110)
.+-.++++|.++++- +.+.-++=+.|.+.||-.....++ + ..-.+||+|+++...+-.
T Consensus 48 ~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~kG~~~~~~~~~ 109 (121)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIE 109 (121)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHEECCCHHHHHHHHHHHH
T ss_conf 59979999999989798799999999987888234236555640100145768999999999
No 29
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=71.45 E-value=3.8 Score=21.61 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=45.5
Q ss_pred HCCCHHHHHCCCC--CCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCCC---CCEEECHHHHHHHHHHHH
Q ss_conf 1223366515888--765765189999998777-8898999999998798122025775---320116113564456420
Q gi|254780987|r 5 LGVNVLQDINLPT--PNNLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESGR---KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 5 ~~~~~~~~~~LP~--~~~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~gr---kew~lT~~G~k~g~~~~d 78 (110)
.|++..|..-|-. .+.+.-+|+++|++.++- +.+.-++=+.|.+.||-.....+.- ..-.+||+|++.....-.
T Consensus 33 ~gl~~~~~~iL~~l~~~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~g~v~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 49899999999999846899918999999979898689999999970203134421246764100068989999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
.
T Consensus 113 ~ 113 (127)
T 2frh_A 113 R 113 (127)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 30
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=71.43 E-value=1.3 Score=24.04 Aligned_cols=72 Identities=17% Similarity=0.033 Sum_probs=46.4
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH
Q ss_conf 12233665158887657651899999987778898999---99999879812202577---5320116113564456420
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110)
.|++..|-.-|-.=.+.+-.++++|.++++ ++.-.+ =+.|.+.||-.....++ +....+|++|++.-..+..
T Consensus 49 ~glt~~q~~iL~~l~~~~~~t~~ela~~~~--~~~~~~s~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 126 (138)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGV--XEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (138)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 597999999999998569969999999977--479888299998741888775047899883001168989999999999
No 31
>>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=71.08 E-value=7.5 Score=19.98 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCCHHCCCC
Q ss_conf 88765765189999998777889899999999879812202577532011611356445642010001588
Q gi|254780987|r 16 PTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTGKKRSDG 86 (110)
Q Consensus 16 P~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~k~h~nG 86 (110)
++...+.+|+..|+.++|| +|-..+-++..+.-|---...+++-.|...+. +.|.+..+..+||
T Consensus 3 ~~~~~~~~l~~~eva~~lg--is~~ti~~~~~~G~~P~~~k~G~~~~~~~~ei-----~~wl~~~~~~~~g 66 (66)
T 1z4h_A 3 HELQPDSLVDLKFIMADTG--FGKTFIYDRIKSGDLPKAKVIHGRARWLYRDH-----CEFKNKLLSRANG 66 (66)
T ss_dssp CCCCSSSEECHHHHHHHHS--SCHHHHHHHHHHHHCCCSEESSSCEEEEHHHH-----HHHHHHHHHHTCC
T ss_pred CCCCCCCEECHHHHHHHHC--CCHHHHHHHHHCCCCCCCEECCCCEEEEHHHH-----HHHHHHHHHHHCC
T ss_conf 8777564164999999979--78999866731896148885499437749999-----9999999987279
No 32
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=70.64 E-value=5.5 Score=20.74 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC--CCC-CEEECHHHHHHHHHHHHC
Q ss_conf 576518999999877788989999---999987981220257--753-201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES--GRK-RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~--grk-ew~lT~~G~k~g~~~~dt 79 (110)
+.+-.++++|.+.++ +|.-.+. +.|.+.||-.....+ .|. ...+||+|++........
T Consensus 13 ~~~~~t~~eia~~l~--~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 76 (91)
T 3g3z_A 13 TEGSRTQKHIGEKWS--LPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTES 76 (91)
T ss_dssp HHCSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 869949999999989--7898999999999831002000266556403211388899999999999
No 33
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=70.20 E-value=2.2 Score=22.93 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=46.1
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877788989999---9999879812202577-5--3201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110)
|.+..|-.-|-+=.+.+-+|+++|.+.++ ++.-.+. +.|.+.||-.....++ + ..-.+|++|.+....+-..
T Consensus 39 ~lt~~~~~iL~~i~~~~~~t~~~la~~~~--i~~~~vs~~i~~L~~~glV~r~~~~~DkR~~~l~LT~~G~~~~~~~~~~ 116 (127)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKXY--LACSTTTDLVDRXERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEK 116 (127)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 97999999999999779949999999878--4524488999989978865100124556401110048799999999999
No 34
>>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} (A:)
Probab=70.17 E-value=3 Score=22.18 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHC---CCCHHHCCCCC-CCEEECHHHHHH
Q ss_conf 576518999999877788989999999987---98122025775-320116113564
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLREW---GFLLEEHESGR-KRDVLTPKGAKG 72 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~---GlQ~~~~~~gr-kew~lT~~G~k~ 72 (110)
+.+-.|+-+|++.||-. .++.||+-|... |.- .+..++ ..|.+|+++...
T Consensus 22 ~~G~~tA~~lAk~Lglt-t~k~vn~~Ly~Le~~g~v--~~~d~~Pp~W~Lt~~~~~r 75 (79)
T 1xmk_A 22 NVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDV--YRQGTTPPIWHLTDKKRER 75 (79)
T ss_dssp HTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSE--EEECSSSCEEEECHHHHTT
T ss_pred HCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEECCHHHH
T ss_conf 65984399999994997-267775999999975680--0179999964523021056
No 35
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=69.81 E-value=4.1 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 6518999999877788989999999987
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
+-+|-.||+++|| +|--.||++|..+
T Consensus 20 ~gltQ~eIA~~lg--iSR~~VsRlL~~A 45 (54)
T 2w48_A 20 QDMTQAQIARELG--IYRTTISRLLKRG 45 (54)
T ss_dssp SCCCHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHH
T ss_conf 4999999999869--8999999999999
No 36
>>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157)
Probab=69.00 E-value=4.6 Score=21.14 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHHHC
Q ss_conf 765189999998777-88989999999987981220257-75--3201161135644564201
Q gi|254780987|r 21 LPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~dt 79 (110)
.+-+|+++|+++++- +.+.-.+-+.|.+.||-...... .+ ..-.+|++|++....+...
T Consensus 84 ~~~~t~~~la~~l~~~~~~vs~~i~~L~~~Gli~r~~~~~DrR~~~i~lT~~G~~~~~~~~~~ 146 (157)
T 2fbk_A 84 PEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPA 146 (157)
T ss_dssp SSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf 999699999999786875799999999866771231056543024542278799999999999
No 37
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=67.89 E-value=6 Score=20.52 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=46.7
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHH
Q ss_conf 1223366515888765765189999998777-88989999999987981220257--75-32011611356445642
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~ 77 (110)
.|.+..|..-|-.=.+.+..++++|++.++- +.+.-++=+.|...||-.....+ .| +.-.+||+|++......
T Consensus 29 ~~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 105 (118)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQRXKRDGYVXTEKNPNDQRETLVYLTKKGEETKKQVD 105 (118)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 69799999999999986998999999986857461879999984311548764588884058888988999999999
No 38
>>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} (A:1-89)
Probab=67.29 E-value=4.3 Score=21.33 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=38.7
Q ss_pred CCHHHHHHHHC------CCCCHHHH---HHHHHHCCCCHHHCC-----CCCCCEEECHHHHHHHHHHHHCCHH
Q ss_conf 18999999877------78898999---999998798122025-----7753201161135644564201000
Q gi|254780987|r 24 YTPTQLGKKLA------TKPSAIKV---NKKLREWGFLLEEHE-----SGRKRDVLTPKGAKGGGRYFDTGKK 82 (110)
Q Consensus 24 ltPTqlGk~lg------~k~SA~~v---N~lL~~~GlQ~~~~~-----~grkew~lT~~G~k~g~~~~dt~k~ 82 (110)
.++-+|-+.+. -++|.-.+ =+.|.+.||-..... +.|+.+.+||+|++.+..+.+.+..
T Consensus 16 ~~Gyei~~~i~~~~~~~~~~~~g~iY~~L~~L~~~GlI~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~l~~~~~ 88 (89)
T 1yg2_A 16 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 88 (89)
T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCC
T ss_conf 9999999999998388417997819999999997797478852068998763778888899999999855545
No 39
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=67.10 E-value=3.1 Score=22.07 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=42.2
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHHC
Q ss_conf 88765765189999998777889899999---999879812202577--5-3201161135644564201
Q gi|254780987|r 16 PTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 16 P~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~dt 79 (110)
-+.+.++-+++.+|.+.++ ++.-.+.+ .|.+.||-.....+. | +...+||+|.+....+...
T Consensus 40 l~~~~~~~~t~~ela~~~~--~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 107 (119)
T 3eco_A 40 LYAHQQDGLTQNDIAKALQ--RTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSI 107 (119)
T ss_dssp HHHSTTTCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 9955999979999999989--6888999999999988896516898888920242788899999999999
No 40
>>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:)
Probab=65.70 E-value=3.4 Score=21.88 Aligned_cols=42 Identities=17% Similarity=-0.098 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEC
Q ss_conf 51899999987778898999999998798122025775320116
Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66 (110)
Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT 66 (110)
-+++.+|.+.+| ++-+.||+.|...=-.-...++.|..|.+-
T Consensus 25 p~~a~~Iae~lg--v~kkeV~k~L~~Lkkeg~I~~~~r~~w~l~ 66 (67)
T 2heo_A 25 PVAIFQLVKKCQ--VPKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp CEEHHHHHHHHC--SCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 687999999978--888999999999987748058998620478
No 41
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=64.91 E-value=3 Score=22.13 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC-CCC--CEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877788989999---999987981220257-753--201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES-GRK--RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~-grk--ew~lT~~G~k~g~~~~dt 79 (110)
|.+..|-.-|-.=.+.+..++++|.++++ ++.-.++ +.|.+.||-...... .++ .-.+||+|++....+...
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~eLa~~~~--i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 118 (130)
T 2eth_A 41 DXKTTELYAFLYVALFGPKKXKEIAEFLS--TTKSNVTNVVDSLEKRGLVVREXDPVDRRTYRVVLTEKGKEIFGEILSN 118 (130)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTT--SCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999859959999999989--6998999999999878884565203566411002188899999999999
No 42
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=63.55 E-value=4.7 Score=21.07 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHH
Q ss_conf 5765189999998777889899999---99987981220257-75--3201161135644564
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRY 76 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~ 76 (110)
+.+-.++++|++.++ ++.-.++. .|...||-...... .+ ....+|++|++....+
T Consensus 13 ~~~~~t~~~l~~~~~--~~~~~vs~~i~~L~~~g~i~r~~~~~d~R~~~i~lT~~G~~~~~~i 73 (75)
T 2fbi_A 13 QQGEMESYQLANQAC--ILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 73 (75)
T ss_dssp HHCSEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHH
T ss_conf 869989999999988--6788899999999978987985315667512220689899999999
No 43
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141)
Probab=62.62 E-value=9.5 Score=19.44 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHH
Q ss_conf 576518999999877788989999999987981220257753201161135
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGA 70 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~ 70 (110)
.++.+|..+|...||..+|...|-..|.+.||- .+.. .++.=.||++-+
T Consensus 21 ~~~~~t~~~l~~~lg~~vS~~Tv~r~L~~~g~~-~~~~-~~~kP~Lt~~~~ 69 (88)
T 1u78_A 21 SNSCKTARDIRNELQLSASKRTILNVIKRSGVI-VRQK-LRPAPLLSADHK 69 (88)
T ss_dssp HHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC--------------------
T ss_pred HCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCE-EECC-CCCCCCCCHHHH
T ss_conf 762467889999818786799999999987972-2245-778999999999
No 44
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=61.38 E-value=13 Score=18.66 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHHHC
Q ss_conf 6576518999999877-788989999999987981220257-75--3201161135644564201
Q gi|254780987|r 19 NNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~dt 79 (110)
+..+-.++++|++.++ .+.+.-.+=+.|.+.||-...... .+ +...+||+|++....+...
T Consensus 58 ~~~~~~t~~~la~~l~i~~~~vs~~i~~Le~~GlI~r~~~~~DrR~~~i~lT~~G~~~~~~~~~~ 122 (133)
T 3boq_A 58 RNPDGLSXGKLSGALKVTNGNVSGLVNRLIKDGXVVKAXSADDRRSFSAKLTDAGLTTFKQASEA 122 (133)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 58999889999988777898999999999868886761066767514777898999999999999
No 45
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=61.32 E-value=2.1 Score=22.94 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=42.5
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC---CCCCEEECHHHHHHHH
Q ss_conf 22336651588876576518999999877788989999---999987981220257---7532011611356445
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES---GRKRDVLTPKGAKGGG 74 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~---grkew~lT~~G~k~g~ 74 (110)
|.+..|-.-|-.=.+.+..|.++|.+.++ +|.-.+. +.|.+.||-...... -.....+|++|++...
T Consensus 4 glt~~~~~iL~~l~~~~~~t~~~la~~~~--~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~~ 76 (78)
T 1z91_A 4 NITYPQYLALLLLWEHETLTVKKMGEQLY--LDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 76 (78)
T ss_dssp CCCHHHHHHHHHHHHHSEEEHHHHHHTTT--CCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECHHHHHHHH
T ss_conf 98999999999988589999999999979--68766889999999789978613888888203478988999999
No 46
>>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} (A:23-111)
Probab=59.78 E-value=15 Score=18.43 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=36.5
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHH---HCCCCHHHCCCCCCCEEECHHHHHHHHHHH
Q ss_conf 89999998777889899999999---879812202577532011611356445642
Q gi|254780987|r 25 TPTQLGKKLATKPSAIKVNKKLR---EWGFLLEEHESGRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 25 tPTqlGk~lg~k~SA~~vN~lL~---~~GlQ~~~~~~grkew~lT~~G~k~g~~~~ 77 (110)
.-.+|-+.+.+ +|.+..++.|. +.|+- .-..+.+-+|.+|++|+.....+.
T Consensus 22 rF~el~~~i~~-is~~~Ls~~Lk~L~~~glv-~r~~p~~veY~LT~~G~~l~~~l~ 75 (89)
T 3df8_A 22 NFNDIRSSIPG-ISSTILSRRIKDLIDSGLV-ERRSGQITTYALTEKGXNVRNSLX 75 (89)
T ss_dssp CHHHHHHTSTT-CCHHHHHHHHHHHHHTTSE-EEEESSSEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH-HEECCCCEEEEECCCHHHHHHHHH
T ss_conf 79999854877-7603699999999985644-012799647875947888999999
No 47
>>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:)
Probab=59.72 E-value=3.2 Score=22.03 Aligned_cols=47 Identities=13% Similarity=-0.045 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCC-CCCEEECHHH
Q ss_conf 65189999998777889899999999879812202577-5320116113
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESG-RKRDVLTPKG 69 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~g-rkew~lT~~G 69 (110)
+.-++..|.+.||-+ .|+.||..|-+.-=|...++.+ .+-|.+++++
T Consensus 23 g~~~Al~iAk~LGl~-~akeVN~~LY~L~k~g~l~~~~tpp~W~l~~k~ 70 (72)
T 3eyi_A 23 GPQRALVIAQALGMR-TAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRWT 70 (72)
T ss_dssp CSEEHHHHHHHTTCC-SGGGTHHHHHHHHHTTSEEECTTTCEEEEC---
T ss_pred CCCHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
T ss_conf 992588999985811-177756899999974277766886723778765
No 48
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=58.74 E-value=7 Score=20.17 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=41.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCCHHHCCC--C-CCCEEECHHHHHHHHHHHHC
Q ss_conf 7657651899999987778898999999---9987981220257--7-53201161135644564201
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKK---LREWGFLLEEHES--G-RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~l---L~~~GlQ~~~~~~--g-rkew~lT~~G~k~g~~~~dt 79 (110)
-+.++-.++++|.+.++ +|.-.+.++ |.+.||-...... . +....+||+|++........
T Consensus 15 ~~~~~~~t~~~l~~~l~--~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 80 (87)
T 1hsj_A 15 RSESNEISSKEIAKCSE--FKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISE 80 (87)
T ss_dssp TCSCSEEEHHHHHHSSC--CCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 86157864999986416--7811204889887751210111357651079999627678779999999
No 49
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=58.61 E-value=8.6 Score=19.67 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC--C-CCCEEECHHHHHHHHHHHHC
Q ss_conf 765189999998777889899999---99987981220257--7-53201161135644564201
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES--G-RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~--g-rkew~lT~~G~k~g~~~~dt 79 (110)
..-.++++|+++++ ++.-.|++ .|.+.||-.....+ . .....+|++|+..-..+...
T Consensus 48 ~~~~t~~ela~~~~--~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 110 (122)
T 3f3x_A 48 EEPRSMVYLANRYF--VTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEV 110 (122)
T ss_dssp HSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHH
T ss_conf 29919999999979--7886899999999967880131355455301213389899999999999
No 50
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=58.46 E-value=13 Score=18.72 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=24.4
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 3665158887657651899999987778898999999998
Q gi|254780987|r 9 VLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLRE 48 (110)
Q Consensus 9 ~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~ 48 (110)
.++++. ++.+++.++|| +|..++|.++..
T Consensus 16 ~Le~~g---------is~~~lA~~lg--vs~~~is~ii~G 44 (46)
T 2ict_A 16 SLDELN---------VSLREFARAXE--IAPSTASRLLTG 44 (46)
T ss_dssp HHHHHT---------CCHHHHHHHHT--CCHHHHHHHHHT
T ss_pred HHHHCC---------CCHHHHHHHHH--HHHHHHHHHHCC
T ss_conf 999979---------99999999997--778999999806
No 51
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=58.17 E-value=5 Score=20.93 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHHH
Q ss_conf 876576518999999877788989999---999987981220257--75-320116113564456420
Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~d 78 (110)
+.++++..++++|.+.++ ++.-.++ +.|...||-.....+ .| +...+||+|++.......
T Consensus 13 ~~~~~~~~t~~~la~~l~--~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 78 (95)
T 1p4x_A 13 TSQNKNIVLLKDLIETIH--HKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLA 78 (95)
T ss_dssp HTTTTCCEEHHHHHHHSS--SCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 859999676999999978--885159999999998899897279988870598989889999999999
No 52
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=58.05 E-value=4.2 Score=21.38 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=45.1
Q ss_pred CCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHH
Q ss_conf 223366515888-765765189999998777889899---999999879812202577-5--320116113564456420
Q gi|254780987|r 6 GVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 6 ~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~d 78 (110)
|.+..|..-|-. .++.+-.|+++|.+.++ +|.-. +=+.|.+.||-.....+. + +.-.+|++|++....+..
T Consensus 36 ~lt~~q~~iL~~l~~~~~~~t~~ela~~~~--~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 113 (124)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATXG--LDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (124)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHT--CCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 989999999999998598989999999978--877778899999998698565148876774687889889999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
.
T Consensus 114 ~ 114 (124)
T 3fm5_A 114 R 114 (124)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 53
>>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} (A:37-117,A:153-164)
Probab=57.84 E-value=12 Score=18.96 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=34.4
Q ss_pred HHHCCCC-CCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 6515888-765765189999998777889-8999999998798122025775
Q gi|254780987|r 11 QDINLPT-PNNLPYYTPTQLGKKLATKPS-AIKVNKKLREWGFLLEEHESGR 60 (110)
Q Consensus 11 ~~~~LP~-~~~~~~ltPTqlGk~lg~k~S-A~~vN~lL~~~GlQ~~~~~~gr 60 (110)
-++.-|. |.--.|||+-|+.++++|..+ -.+|-..|...|++......++
T Consensus 22 l~vsdP~sp~Ygk~Lt~~e~~~~~~Ps~~~i~~V~~wL~~~Gl~v~~~~~~~ 73 (93)
T 1t1e_A 22 VERQAALAPHARVHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAA 73 (93)
T ss_dssp HHHHTTSCTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7523999965477889999998878599999999999997799558762689
No 54
>>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183)
Probab=57.58 E-value=11 Score=19.19 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 6518999999877788989999999987
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
+=+.||+|.+.|| ||-..|-++|.+.
T Consensus 16 ~G~g~t~IAk~Lg--I~R~sVYriL~~~ 41 (42)
T 1gdt_A 16 QGLGASHISKTMN--IARSTVYKVINES 41 (42)
T ss_dssp TTCCHHHHHHHHT--CCHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHC
T ss_conf 7999999999989--2999999999704
No 55
>>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:)
Probab=57.51 E-value=12 Score=18.87 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHH---CCCCHHHCCCCCCCEEECHHHHHHH
Q ss_conf 7651899999987778898999999998---7981220257753201161135644
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLRE---WGFLLEEHESGRKRDVLTPKGAKGG 73 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~---~GlQ~~~~~~grkew~lT~~G~k~g 73 (110)
.+-++-.+|.++|| +|-..|+++|.. .||= +.... .-.+|++|++.-
T Consensus 28 ~e~~tq~eIA~~Lg--iSr~~V~r~L~~a~~~GlV-~i~i~---~~~~t~~G~~~~ 77 (200)
T 2p8t_A 28 KEPLGRKQISERLE--LGEGSVRTLLRKLSHLDII-RSKQR---GHFLTLKGKEIR 77 (200)
T ss_dssp TSCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSE-EEC-----CEEECHHHHHHH
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCE-EECCC---CCEECHHHHHHH
T ss_conf 48855899998809--8278999999999768968-96178---628847189999
No 56
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=56.67 E-value=9.2 Score=19.50 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=34.2
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEE
Q ss_conf 2336651588876576518999999877-7889899999999879812202577532011
Q gi|254780987|r 7 VNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVL 65 (110)
Q Consensus 7 ~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~l 65 (110)
+.+++.+. .+.+-++.+||.+.++ ||.++-++=.-|.+.||- .+...+.|.+
T Consensus 11 l~iL~~l~----~~~~~~t~~eia~~~glp~st~~Rll~tL~~~g~l---~~~~~~~Y~l 63 (64)
T 1mkm_A 11 FEILDFIV----KNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFV---LRKKDKRYVP 63 (64)
T ss_dssp HHHHHHHH----HCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSE---EECTTSCEEE
T ss_pred HHHHHHHH----HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE---EECCCCCEEC
T ss_conf 99999997----28999899999998791999999999999977986---4057754422
No 57
>>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82)
Probab=55.83 E-value=12 Score=18.86 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHH---HCCCC
Q ss_conf 65189999998777889899999999---87981
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLR---EWGFL 52 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~---~~GlQ 52 (110)
.-++||||.+.|| +|+|.|-.-+. ..|+-
T Consensus 15 ~~m~i~eI~keLg--lSeR~VRe~v~~L~r~Gll 46 (64)
T 1sfx_A 15 GGXRVSEIARELD--LSARFVRDRLKVLLKRGFV 46 (64)
T ss_dssp CCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHC--CCCCHHHHHHHHHHHCCCE
T ss_conf 8887999999975--6701899999999959997
No 58
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=54.56 E-value=9.4 Score=19.45 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCC-CCC--CEEECHHHHH
Q ss_conf 657651899999987778898999---9999987981220257-753--2011611356
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHES-GRK--RDVLTPKGAK 71 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~-grk--ew~lT~~G~k 71 (110)
.+.+-.|+++|.+.++ ++.-.+ =+.|.+.||-.....+ .++ ...+|++|++
T Consensus 14 ~~~~~~t~~~la~~~~--i~~~~~s~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~ 70 (71)
T 2pex_A 14 WETDERSVSEIGERLY--LDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA 70 (71)
T ss_dssp HHSCSEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCHHH
T ss_conf 8479989999999979--68878999999999889989810898878479888935899
No 59
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=54.02 E-value=6.9 Score=20.19 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=48.8
Q ss_pred HCCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHH
Q ss_conf 1223366515888-765765189999998777889899999---999879812202577---532011611356445642
Q gi|254780987|r 5 LGVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 5 ~~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~ 77 (110)
.|++..|-.-|-+ -++.+-+|+.+|.+.++ ++.-.+.. .|.+.||-.....+. .+...+|++|.+....+.
T Consensus 17 ~~ls~~~~~vll~~l~~~~~~t~~eLa~~l~--i~~~tvs~~l~~L~~~glI~r~~~~~d~R~~~i~lT~~g~~~~~~~~ 94 (109)
T 2d1h_A 17 YKITDTDVAVLLKXVEIEKPITSEELADIFK--LSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIR 94 (109)
T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 7959999999999998496989999999978--87234999999999879863626877898734787517899999999
Q ss_pred HC
Q ss_conf 01
Q gi|254780987|r 78 DT 79 (110)
Q Consensus 78 dt 79 (110)
..
T Consensus 95 ~~ 96 (109)
T 2d1h_A 95 ND 96 (109)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 60
>>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75)
Probab=53.85 E-value=16 Score=18.27 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCC
Q ss_conf 765765189999998777889899999999879812202577
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESG 59 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~g 59 (110)
+.++++||..+..++|| .+--+|-++|.+.-|- .+++++
T Consensus 26 ~~de~~LtlpevAe~Lg--v~vtrV~~Lird~~Li-aVrrgg 64 (75)
T 2kfs_A 26 DPDEPTYDLPRVAELLG--VPVSKVAQQLREGHLV-AVRRAG 64 (75)
T ss_dssp CTTSCEEEHHHHHHHHT--CCHHHHHHHHHTTSCC-CEEETT
T ss_pred CCCCCCCCHHHHHHHHC--CCHHHHHHHHHCCCEE-EEECCC
T ss_conf 57766348999999969--8889999999879479-997099
No 61
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=53.81 E-value=16 Score=18.23 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCC--CCCCCEEECHHH
Q ss_conf 7651899999987778898999999998798122025--775320116113
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHE--SGRKRDVLTPKG 69 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~--~grkew~lT~~G 69 (110)
....+.-+|.+.|| ++-+.||+.|-..==+-..++ ..-..|.+|+..
T Consensus 25 ~~~~tA~~LAk~Lg--i~Kk~vNr~LY~L~k~g~v~~~~~~PP~W~l~~~~ 73 (81)
T 1qbj_A 25 GKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp TCCBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred CCCHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCC
T ss_conf 97510999999969--88889899999999878832058989963745788
No 62
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:166-190,B:401-478)
Probab=52.27 E-value=20 Score=17.72 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEC
Q ss_conf 7657651899999987778898999999998798122025775320116
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT 66 (110)
.+..-.++...+-+.+|..+|...+-++|...||. .....+.|..+
T Consensus 25 ~~~~i~l~~~~i~~iLG~~l~~e~i~~~L~rLGf~---v~~~~~~~~V~ 70 (103)
T 1b7y_B 25 APEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCR---VEGEGPTYRVT 70 (103)
T ss_dssp CCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCE---EESSSSSEEEE
T ss_pred CCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCC---EECCCCCEEEE
T ss_conf 00143144899974122100201678999754872---20588737999
No 63
>>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, prodomain, exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* (A:1-168)
Probab=51.88 E-value=19 Score=17.81 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHHHCCCC-CCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCCH
Q ss_conf 366515888-7657651899999987778-898999999998798122025775320116113564456420100
Q gi|254780987|r 9 VLQDINLPT-PNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTGK 81 (110)
Q Consensus 9 ~~~~~~LP~-~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~k 81 (110)
.++++.-|. |+--.|||+-|+.++++|. .+-.+|-..|...||+......++ .|.--..--+-.+.++.|..
T Consensus 45 ~~~~vs~P~s~~ygk~Lt~~e~~~~~~ps~~~i~~V~~~L~~~G~~~~~~~~~~-~~i~~~~tv~~~e~~f~t~~ 118 (168)
T 3edy_A 45 LVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQ-DFLTCWLSIRQAELLLPGAE 118 (168)
T ss_dssp HHHHHHCTTSTTTTCCCCHHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEECTTS-CEEEEEEEHHHHHHHSTTCC
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHCCCE
T ss_conf 999855999863578899999998878399999999999998699705651478-77999989999998727665
No 64
>>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} (A:278-348)
Probab=51.67 E-value=16 Score=18.17 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 576518999999877788989999999987981220
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEE 55 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~ 55 (110)
..-.+++..+-+.+|-.+|...+-++|...||+.+.
T Consensus 4 ~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~v~~ 39 (71)
T 2cxi_A 4 KEFEVELDYIRKLSGLELNDGEIKELLEKXXYEVEI 39 (71)
T ss_dssp EEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE
T ss_pred EEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 589978999988858867999999999987997996
No 65
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=51.21 E-value=6.4 Score=20.37 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877788989999---9999879812202577---53201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110)
|.+..|-.-|-.=.+.+-.|+++|++.++ ++.-.+. +.|.+.||-.....+. +..-.+|++|.+....+...
T Consensus 34 ~ls~~q~~iL~~i~~~~~~t~~ela~~~~--i~~~~vsr~v~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 111 (122)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERXE--VKPSAVTLXADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAG 111 (122)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 98999999999999869979999999989--6998999999999862425520233677520002489899999999999
No 66
>>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} (A:)
Probab=50.96 E-value=21 Score=17.61 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHH---HCCCCHHHCCC---CCCCEEECHHHHHHHHHH
Q ss_conf 65189999998777889899999999---87981220257---753201161135644564
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLR---EWGFLLEEHES---GRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~---~~GlQ~~~~~~---grkew~lT~~G~k~g~~~ 76 (110)
+-.+..+|-+.+.+ +|.+.+++.|. +.|+-.....+ -+-+|.+|++|......+
T Consensus 34 g~~rf~el~r~l~g-iS~~~Ls~rLk~L~~~gli~r~~~~~~p~~v~Y~LT~~G~~L~pil 93 (112)
T 1z7u_A 34 GTKRNGELXRALDG-ITQRVLTDRLREXEKDGLVHRESFNELPPRVEYTLTPEGYALYDAL 93 (112)
T ss_dssp SCBCHHHHHHHSTT-CCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf 99879999987622-0021699989899968861243257888630404347587999999
No 67
>>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP} (A:14-115)
Probab=50.79 E-value=11 Score=19.13 Aligned_cols=63 Identities=13% Similarity=-0.030 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHC-----CCCCHHH---HHHHHHHCCCCHHH-CC-----CCCCCEEECHHHHHHHHHHHHCCHHC
Q ss_conf 76518999999877-----7889899---99999987981220-25-----77532011611356445642010001
Q gi|254780987|r 21 LPYYTPTQLGKKLA-----TKPSAIK---VNKKLREWGFLLEE-HE-----SGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110)
Q Consensus 21 ~~~ltPTqlGk~lg-----~k~SA~~---vN~lL~~~GlQ~~~-~~-----~grkew~lT~~G~k~g~~~~dt~k~h 83 (110)
++-.+.-+|-+.+. -++|.-. +=+.|.+.||-... .. ..|+.+.+|++|+++...+......+
T Consensus 20 ~~p~~Gyei~~~l~~~~g~~~i~~g~iY~~L~~Le~~GlI~~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~~~~~~~~ 96 (102)
T 2dql_A 20 QGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLWQNY 96 (102)
T ss_dssp TSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 59978999999999977950579873699999999889869997523788876369998987999999999999999
No 68
>>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=50.51 E-value=11 Score=19.11 Aligned_cols=61 Identities=25% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHCC-------C---CCHHHHHHHHHHCCCCHHH-C---CCCCCCEEECHHHHHHHHHHHHCCHHC
Q ss_conf 5189999998777-------8---8989999999987981220-2---577532011611356445642010001
Q gi|254780987|r 23 YYTPTQLGKKLAT-------K---PSAIKVNKKLREWGFLLEE-H---ESGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110)
Q Consensus 23 ~ltPTqlGk~lg~-------k---~SA~~vN~lL~~~GlQ~~~-~---~~grkew~lT~~G~k~g~~~~dt~k~h 83 (110)
-.++.+|-+.+.- + -|--.+=+.|.+.||-... . ...|+.+.+|++|++++..+.......
T Consensus 26 p~~GYel~~~l~~~~~~~~~~~s~g~iY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~iT~~G~~~l~~~~~~~~~~ 100 (118)
T 2esh_A 26 PSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSLEDM 100 (118)
T ss_dssp CBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 977999999999956676111684517899999998898599850379988658898988999999999999999
No 69
>>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} (A:)
Probab=49.44 E-value=22 Score=17.47 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCCC---CCCCEEECHHHHHHHHHH
Q ss_conf 76518999999877788989999999---987981220257---753201161135644564
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHES---GRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~ 76 (110)
++..+..||-+.+.. +|.+.+++.| .+.|+-.....+ -+-+|.+|++|+.....+
T Consensus 36 ~g~~rF~el~~~l~g-is~~~Ls~rLk~L~~~gli~r~~~~~~p~~veY~LT~~G~~L~~vl 96 (107)
T 2fsw_A 36 RRIIRYGELKRAIPG-ISEKXLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPII 96 (107)
T ss_dssp TSCEEHHHHHHHSTT-CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHH
T ss_pred CCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHCHHHHHHHHHH
T ss_conf 599879999645312-4867899999999988960333448999855230166388899999
No 70
>>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69)
Probab=47.70 E-value=22 Score=17.43 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 651899999987778898999999998
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLRE 48 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~ 48 (110)
+-.++.|+.++|+ +|..+++++|..
T Consensus 16 ~G~s~~~aA~~f~--VS~~tv~k~~~r 40 (53)
T 1pdn_C 16 DGIRPCVISRQLR--VSHGCVSKILNR 40 (53)
T ss_dssp TTCCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 6999999999889--689999999999
No 71
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=44.56 E-value=26 Score=17.04 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=20.0
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 189999998777889899999999
Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVNKKLR 47 (110)
Q Consensus 24 ltPTqlGk~lg~k~SA~~vN~lL~ 47 (110)
+|.+++.+.+| +|...+|.+|.
T Consensus 32 is~~~lA~~lg--vs~~~is~Ii~ 53 (56)
T 3cec_A 32 INTANFAEILG--VSNQTIQEVIN 53 (56)
T ss_dssp CCHHHHHHHHT--SCHHHHHHHHT
T ss_pred CCHHHHHHHHC--CCHHHHHHHHC
T ss_conf 99999999978--27899999981
No 72
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117)
Probab=44.13 E-value=27 Score=17.00 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 6576518999999877788989999999987981
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110)
.+++..|--+|.++|+ +|..+|-.-|.+.|+.
T Consensus 17 e~D~~~TtreiA~~Ln--vs~~TI~~hLk~iG~v 48 (52)
T 3hot_A 17 DEDDAQTQKQLAEQLE--VSQQAVSNRLREMGKI 48 (52)
T ss_dssp HHCSCCCHHHHHHHTT--SCHHHHHHHHHHTTCE
T ss_pred HHCCCCHHHHHHHHHC--CCHHHHHHHHHHCCCE
T ss_conf 9664001899998856--4888999999972872
No 73
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=43.83 E-value=27 Score=16.97 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH
Q ss_conf 76518999999877788989999---999987981220257753201161135644564
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110)
++-++..+|.+.+| +|.-.+. +.|.++|+-....++....|.+++++-...-.+
T Consensus 69 ~~~~~~~eLa~~l~--is~~tvS~HL~~L~~aGlV~~~r~G~~~~Y~l~~~~~~~l~~~ 125 (131)
T 3f6v_A 69 SGEQTVNNLAAHFP--ASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (131)
T ss_dssp GCCEEHHHHHTTSS--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHHHHHHHHHH
T ss_conf 29917999999988--7877899987549869935789877989999886999999999
No 74
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=43.54 E-value=25 Score=17.11 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHH
Q ss_conf 6576518999999877-7889899999999879812202577532011611
Q gi|254780987|r 19 NNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPK 68 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~ 68 (110)
....-++++||.+.+| |+.++-++=.-|.+.||- .+.+ +.|.+.++
T Consensus 25 ~~~~~~t~~eia~~~glp~stv~Rll~tL~~~g~l---~~~~-g~Y~lG~~ 71 (75)
T 2g7u_A 25 AQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYV---AGSG-GRWSLTPR 71 (75)
T ss_dssp SSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSE---EEET-TEEEECGG
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE---EECC-CCEEECHH
T ss_conf 37999899999999791999999999999979969---9428-74340389
No 75
>>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} (A:1-86)
Probab=42.64 E-value=28 Score=16.87 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHH---HCCCCHHHC--CCCCCCEEECHHH
Q ss_conf 765189999998777889899999999---879812202--5775320116113
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLR---EWGFLLEEH--ESGRKRDVLTPKG 69 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~---~~GlQ~~~~--~~grkew~lT~~G 69 (110)
++-.+..+|-+.++ +|.+..++.|. +.|+--+.+ .+.+-+|.+|++|
T Consensus 35 ~g~~rF~el~~~l~--iS~k~Ls~rL~~L~~~gi~rk~~~~~p~~veY~LT~~G 86 (86)
T 2f2e_A 35 EGLTRFGEFQKSLG--LAKNILAARLRNLVEHGVXVAVPAESGSHQEYRLTDKG 86 (86)
T ss_dssp TTCCSHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHH
T ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCH
T ss_conf 49977999999874--40889999999999701445646888865788418376
No 76
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=42.50 E-value=26 Score=17.09 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 765189999998777889899999999
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLR 47 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~ 47 (110)
+..+++-+|+++|| .|...|++.|.
T Consensus 33 ~~g~s~~~iA~~~G--~s~~~V~~~L~ 57 (59)
T 1vz0_A 33 EMGLTQEEVARRVG--KARSTVANALR 57 (59)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf 98872999998759--99999856776
No 77
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=41.27 E-value=22 Score=17.50 Aligned_cols=60 Identities=20% Similarity=0.084 Sum_probs=34.1
Q ss_pred CCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCCHHHCCC--CCCCEEECH
Q ss_conf 223366515888-7657651899999987778898999---9999987981220257--753201161
Q gi|254780987|r 6 GVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIKV---NKKLREWGFLLEEHES--GRKRDVLTP 67 (110)
Q Consensus 6 ~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~v---N~lL~~~GlQ~~~~~~--grkew~lT~ 67 (110)
|++..|-.-|-+ -.+.+-.++++|++.++ ++.-.+ =+.|.+.||-...... .|....+||
T Consensus 23 gls~~q~~vL~~l~~~~g~~t~~~La~~~~--~~~~~vs~~i~~Le~~G~I~r~~~~~D~R~~~ilTe 88 (88)
T 1ku9_A 23 GLNKSVGAVYAILYLSDKPLTISDIXEELK--ISKGNVSXSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (88)
T ss_dssp TCCHHHHHHHHHHHHCSSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEC
T ss_conf 979999999999997698969999997848--665149999999998899898528988874687778
No 78
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=39.88 E-value=29 Score=16.77 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 6576518999999877788989999999987
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
.+.+..|.-+|.+.|| ++.+.||+.|-..
T Consensus 25 ~~~~~~tA~~lAk~Lg--~~Kk~VNr~LY~L 53 (75)
T 1sfu_A 25 NTNDYTTAISLSNRLK--INKKKINQQLYKL 53 (75)
T ss_dssp CTTCEECHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHC--CHHHHHHHHHHHH
T ss_conf 7544221999998863--0087888999999
No 79
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=39.57 E-value=20 Score=17.72 Aligned_cols=45 Identities=13% Similarity=0.004 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCC--CCCCEEECHH
Q ss_conf 6518999999877788989999999987981220257--7532011611
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHES--GRKRDVLTPK 68 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~--grkew~lT~~ 68 (110)
...+.-+|.+.|| ++-+.||+.|-..==+-..++. .-..|.+|+.
T Consensus 30 ~~~tA~~LAk~lg--~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~l~~s 76 (77)
T 1qgp_A 30 KATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 76 (77)
T ss_dssp SCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEEECSSSCEEEECCC
T ss_pred CCHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCC
T ss_conf 7602999999969--8888889999999987895306998993260578
No 80
>>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} (A:)
Probab=39.12 E-value=15 Score=18.33 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=38.8
Q ss_pred CCHHHHHHHHC----C--CCCHHHH---HHHHHHCCCCHHHC-----CCCCCCEEECHHHHHHHHHHHHCCHHC
Q ss_conf 18999999877----7--8898999---99999879812202-----577532011611356445642010001
Q gi|254780987|r 24 YTPTQLGKKLA----T--KPSAIKV---NKKLREWGFLLEEH-----ESGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110)
Q Consensus 24 ltPTqlGk~lg----~--k~SA~~v---N~lL~~~GlQ~~~~-----~~grkew~lT~~G~k~g~~~~dt~k~h 83 (110)
..+-+|-+.+. . .+|.-.+ =+.|.+.||-.... ...|+.+.+||+|+++...+.......
T Consensus 55 ~~GyeL~~~i~~~~~~~~~~s~gtiY~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~~~~~~~~ 128 (145)
T 1xma_A 55 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELT 128 (145)
T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 88999999999974994257877432999999978973888763589976469998988999999999999999
No 81
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=38.37 E-value=22 Score=17.50 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 76576518999999877788989999999987981
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110)
|++-.+++..+|+++.+ .|...|.+.....||.
T Consensus 34 ~~~~~~~si~eiA~~~~--vS~sTI~Rf~kkLGy~ 66 (111)
T 2o3f_A 34 PHXAIESTVNEISALAN--SSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHHHHTCCHHHHHHHTT--CCHHHHHHHHHHTTCS
T ss_pred HHHHHHCCHHHHHHHHC--CCHHHHHHHHHHHCCC
T ss_conf 24765557999999979--8999999999996679
No 82
>>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:)
Probab=37.88 E-value=31 Score=16.65 Aligned_cols=54 Identities=11% Similarity=-0.082 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHH
Q ss_conf 765189999998777889899999999879812202577532011611356445
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGG 74 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~ 74 (110)
.+..+.++|.+.++-..|+..-...|.++||-.....+.+.-|.+.+..-....
T Consensus 39 ~~~~~v~ela~~l~~s~stvS~HLkL~~aGli~~~r~G~~~~Y~l~~~~~~~l~ 92 (99)
T 2zkz_A 39 HKALNVTQIIQILKLPQSTVSQHLCKXRGKVLKRNRQGLEIYYSINNPKVEGII 92 (99)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHBTTTBEEEEETTEEEEECCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEECHHHHHHHH
T ss_conf 899469999999886988999999999829805899878899998929999999
No 83
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=37.80 E-value=28 Score=16.89 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 765189999998777889899999999
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLR 47 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~ 47 (110)
+..+++.+|+++|| .|...|++.|+
T Consensus 50 ~~g~s~~~iA~~lg--~s~~~V~~~l~ 74 (76)
T 1r71_A 50 AKGKKKGDIAKEIG--KSPAFITQHVT 74 (76)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHHHHG
T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHH
T ss_conf 83898999999988--89999999999
No 84
>>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} (A:1-78)
Probab=37.66 E-value=34 Score=16.43 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHH---HCCCCHHHCCCC---CCCEEECHHH
Q ss_conf 765189999998777889899999999---879812202577---5320116113
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLR---EWGFLLEEHESG---RKRDVLTPKG 69 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~---~~GlQ~~~~~~g---rkew~lT~~G 69 (110)
.+..+..||-+.+.+ +|.+..++.|. +.|+-...-.+. +-+|.+|++|
T Consensus 25 ~g~~rF~el~r~l~g-is~~~Ls~~Lk~L~~~glv~r~~~~~~p~~v~Y~LT~~G 78 (78)
T 2hzt_A 25 HGKKRTSELKRLXPN-ITQKXLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG 78 (78)
T ss_dssp TCCBCHHHHHHHCTT-SCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred CCCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 199859999967615-474889999999999898872265788861055753708
No 85
>>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74)
Probab=35.78 E-value=27 Score=17.01 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 876576518999999877788989999999987981
Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110)
Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110)
-|++-.+++.++|++..+ .|...|.+.....||.
T Consensus 29 ~~~~~~~~si~eiA~~~~--vS~stv~Rf~kklGf~ 62 (74)
T 3iwf_A 29 YPHKVVNXTSQEIANQLE--TSSTSIIRLSKKVTPG 62 (74)
T ss_dssp CHHHHTTCCHHHHHHHHT--SCHHHHHHHHHHHSTT
T ss_pred CHHHHHHCCHHHHHHHHC--CCHHHHHHHHHHHCCC
T ss_conf 999997763999999979--9998999999995899
No 86
>>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88)
Probab=34.34 E-value=37 Score=16.19 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHH----HCCCCHHHCCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 5189999998777889899999999----8798122025775320116113564456420
Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVNKKLR----EWGFLLEEHESGRKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN~lL~----~~GlQ~~~~~~grkew~lT~~G~k~g~~~~d 78 (110)
+-+-|.-++.|+ +|.-+|-+.|. ..|++ .|.-..+.++||+.|+........
T Consensus 15 ~gs~t~AA~~L~--it~~avs~~i~~LE~~~g~~--LF~R~~~~~~lT~~G~~l~~~~~~ 70 (88)
T 1ixc_A 15 AGNXAAAAKRLH--VSQPPITRQXQALEADLGVV--LLERSHRGIELTAAGHAFLEDARR 70 (88)
T ss_dssp HSSHHHHHHHHT--CCHHHHHHHHHHHHHHHTSC--CBC-----CCBCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHC--CCHHHHHHHHHHHHHHHCCE--EEEECCCCEEECHHHHCCCCCCCH
T ss_conf 099999999988--88899999999999986999--999889942771503103334306
No 87
>>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} (A:)
Probab=33.47 E-value=40 Score=16.05 Aligned_cols=30 Identities=7% Similarity=-0.091 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 57651899999987778898999999998798
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLREWGF 51 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~Gl 51 (110)
+-+.+|-.+||+.+| +|--+|.+++..+=-
T Consensus 27 ~~~~~t~~EIa~~lg--iS~~~Vr~~~~ral~ 56 (73)
T 1ku3_A 27 DGREHTLEEVGAYFG--VTRERIRQIENKALR 56 (73)
T ss_dssp TSSCCCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_conf 999878999999989--799999999999999
No 88
>>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Probab=32.50 E-value=41 Score=15.95 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 76518999999877788989999---999987981220257753201161135644564201
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110)
++-.+.++|.+.|| +|--.|. +.|.++||-.....+.+..+.+++.+-.....+...
T Consensus 29 ~~~~~~~eLa~~l~--is~~tvs~hL~~L~~~Glv~~~~~G~~~~y~~~~~~~~~~~~~l~~ 88 (118)
T 3f6o_A 29 RGPATVSELAKPFD--MALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAE 88 (118)
T ss_dssp TCCEEHHHHHTTCC--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCEEEEECCEEEEEECHHHHHHHHHHHHH
T ss_conf 09977777798869--6999999999889988986267778889999887999999999999
No 89
>>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A* (A:)
Probab=31.90 E-value=29 Score=16.83 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=38.9
Q ss_pred CCHHHHHHHHC------CCCCHHHH---HHHHHHCCCCHH-HCC----CCCCCEEECHHHHHHHHHHHHCCHHC
Q ss_conf 18999999877------78898999---999998798122-025----77532011611356445642010001
Q gi|254780987|r 24 YTPTQLGKKLA------TKPSAIKV---NKKLREWGFLLE-EHE----SGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110)
Q Consensus 24 ltPTqlGk~lg------~k~SA~~v---N~lL~~~GlQ~~-~~~----~grkew~lT~~G~k~g~~~~dt~k~h 83 (110)
.++-+|-+++. -.+|.-.+ =+.|.+.||-.. |.. ..|+.+.+|++|++....+...+...
T Consensus 26 ~~Gyei~~~i~~~~~~~~~is~g~iY~~L~rLe~~G~i~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~~~~~ 99 (116)
T 3f8b_A 26 NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRV 99 (116)
T ss_dssp BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 88999999999983993168977549999999978976899631578987659998988999999999999999
No 90
>>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum} (A:1-94)
Probab=31.60 E-value=22 Score=17.48 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=31.3
Q ss_pred CHHHHHHHH----CCCCCHH---HHHHHHHHCCCCHHH-CCC----CCCCEEECHHHHHHHHHHH
Q ss_conf 899999987----7788989---999999987981220-257----7532011611356445642
Q gi|254780987|r 25 TPTQLGKKL----ATKPSAI---KVNKKLREWGFLLEE-HES----GRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 25 tPTqlGk~l----g~k~SA~---~vN~lL~~~GlQ~~~-~~~----grkew~lT~~G~k~g~~~~ 77 (110)
.+-+|-+.+ +-++|.- .+=+.|.+.||-... ... .|+.+.+|++|+++...+.
T Consensus 29 ~Gyei~~~i~~~~~~~i~~gtiY~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~ 93 (94)
T 3elk_A 29 HGYELQKSXFETTGQALPQGSIYILLKTXKERGFVISESSVNEKGQQLTVYHITDAGKKFLXDHS 93 (94)
T ss_dssp EHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 49999999999718989955379999999988957999863589988669898989999999999
No 91
>>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:1-91)
Probab=31.54 E-value=42 Score=15.95 Aligned_cols=50 Identities=12% Similarity=-0.087 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHH----HCCCCHHHCCCCCCCEEECHHHHHHHHHH
Q ss_conf 5189999998777889899999999----87981220257753201161135644564
Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVNKKLR----EWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN~lL~----~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110)
+-+-|.-++.|+ +|.-+|-+.|. ..|.. .+.-..+.+.|||.|+..-...
T Consensus 16 ~~s~s~AA~~L~--isq~avS~~i~~LE~~~g~~--Lf~R~~~~~~lT~~G~~l~~~~ 69 (91)
T 3fxq_A 16 VGSLRAAAQLLH--LSQPALSAAIQQLEDELKAP--LLVRTKRGVSLTSFGQAFMKHA 69 (91)
T ss_dssp HSCHHHHHHHTT--CCHHHHHHHHHHHHHHHTSC--SEEECSSSEEECHHHHHHHHHH
T ss_pred HCCHHHHHHHHC--CCHHHHHHHHHHHHHHHCCE--EEEECCCCEEECHHHHHHHHHH
T ss_conf 299999999989--88899999999999985999--9998499158997375221343
No 92
>>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109)
Probab=29.83 E-value=46 Score=15.70 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCCHHHCCCCCCCEEECHHHH
Q ss_conf 7651899999987778898999999---9987981220257753201161135
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKK---LREWGFLLEEHESGRKRDVLTPKGA 70 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~l---L~~~GlQ~~~~~~grkew~lT~~G~ 70 (110)
++-.|+.||.+.+| .+...+-.+ |+..||- .+.+...|.+|+.++
T Consensus 21 ~~p~t~~eLA~~~g--~~~~~l~rllr~l~~~gl~---~e~~~~~y~~t~~s~ 68 (80)
T 1tw3_A 21 AGARTVKALAARTD--TRPEALLRLIRHLVAIGLL---EEDAPGEFVPTEVGE 68 (80)
T ss_dssp TTCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSE---EEEETTEEEECTTGG
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEE---EEECCCCCCCCHHHH
T ss_conf 69989999998879--0999999999999867969---950898554698999
No 93
>>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:)
Probab=28.43 E-value=49 Score=15.56 Aligned_cols=27 Identities=7% Similarity=-0.049 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 65189999998777889899999999879
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLREWG 50 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~~G 50 (110)
+-+|..+|++++| +|-.+|-+++..+=
T Consensus 37 e~~s~~EIA~~lg--is~~~V~~~~~ral 63 (87)
T 1tty_A 37 KPKTLEEVGQYFN--VTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHHH
T ss_conf 9566999999969--88999999999999
No 94
>>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP} (A:36-148)
Probab=27.21 E-value=33 Score=16.51 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=37.9
Q ss_pred CCHHHHHHHHC----C-CCCHHH---HHHHHHHCCCCHHH-CC-----CCCCCEEECHHHHHHHHHHHHCCHHCC
Q ss_conf 18999999877----7-889899---99999987981220-25-----775320116113564456420100015
Q gi|254780987|r 24 YTPTQLGKKLA----T-KPSAIK---VNKKLREWGFLLEE-HE-----SGRKRDVLTPKGAKGGGRYFDTGKKRS 84 (110)
Q Consensus 24 ltPTqlGk~lg----~-k~SA~~---vN~lL~~~GlQ~~~-~~-----~grkew~lT~~G~k~g~~~~dt~k~h~ 84 (110)
.+.-+|-+.+. . ++|.-. +=+.|.+.||-... .. ..|+.+.+|++|++....+...+....
T Consensus 23 ~~Gyei~~~i~~~~~~~~~s~g~lY~~L~~Le~~g~i~~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~~~~~~~~~ 97 (113)
T 2zfw_A 23 SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYL 97 (113)
T ss_dssp EEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 989999999999829977786437999999998898488853357889987389979989999999999999999
No 95
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=27.21 E-value=52 Score=15.44 Aligned_cols=47 Identities=13% Similarity=-0.022 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHH
Q ss_conf 76518999999877788989999---99998798122025775320116113
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKG 69 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G 69 (110)
++.+|+++|.+.|| +|.-.|. +.|.++||-.....+..+-|.+++..
T Consensus 22 ~g~~tv~eLa~~lg--is~~tvS~HL~~L~~~GlV~~~r~Gr~~~y~l~~~~ 71 (165)
T 2vxz_A 22 DGCKTTSLIQQRLG--LSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSXDQ 71 (165)
T ss_dssp TCCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHH
T ss_pred CCCHHHHHHHHHHC--CHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHH
T ss_conf 54508999999826--508999999999986681699986344799956379
No 96
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=27.04 E-value=52 Score=15.42 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHH
Q ss_conf 576518999999877788989999---99998798122025775320116113564
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKG 72 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~ 72 (110)
+.+..+..+|.+.|+ +|...+. +.|.++||-.....+.+.-|.+++++-..
T Consensus 26 ~~~~~~~~ela~~l~--is~~tvs~HL~~L~~~Glv~~~~~g~~~~y~l~~~~~~~ 79 (90)
T 3cuo_A 26 GSPGTSAGELTRITG--LSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNA 79 (90)
T ss_dssp TCCSEEHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHH
T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHH
T ss_conf 699941999999989--298789999999998895179988899999988699999
No 97
>>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942} (A:26-138)
Probab=26.64 E-value=33 Score=16.51 Aligned_cols=61 Identities=13% Similarity=-0.005 Sum_probs=38.4
Q ss_pred CCHHHHHHHHC-----CCCCHHHH---HHHHHHCCCCHHH-CC-----CCCCCEEECHHHHHHHHHHHHCCHHCC
Q ss_conf 18999999877-----78898999---9999987981220-25-----775320116113564456420100015
Q gi|254780987|r 24 YTPTQLGKKLA-----TKPSAIKV---NKKLREWGFLLEE-HE-----SGRKRDVLTPKGAKGGGRYFDTGKKRS 84 (110)
Q Consensus 24 ltPTqlGk~lg-----~k~SA~~v---N~lL~~~GlQ~~~-~~-----~grkew~lT~~G~k~g~~~~dt~k~h~ 84 (110)
.+.-+|-+.+. -++|.-.+ =+.|.+.||-... .. ..|+.+.+|++|++....+...+....
T Consensus 23 ~~Gyei~~~i~~~~~~~~~s~g~lY~~L~~Le~~g~i~~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~~~~~~~~~ 97 (113)
T 2e1n_A 23 SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYL 97 (113)
T ss_dssp EEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999829967786438999999998897589864247778770687889979999999999999998
No 98
>>3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583} (A:)
Probab=25.88 E-value=39 Score=16.10 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHC----CCCCHHHHH---HHHHHCCCCHH-HCC--C--CCCCEEECHHHHHHHHHHHHCCH
Q ss_conf 6518999999877----788989999---99998798122-025--7--75320116113564456420100
Q gi|254780987|r 22 PYYTPTQLGKKLA----TKPSAIKVN---KKLREWGFLLE-EHE--S--GRKRDVLTPKGAKGGGRYFDTGK 81 (110)
Q Consensus 22 ~~ltPTqlGk~lg----~k~SA~~vN---~lL~~~GlQ~~-~~~--~--grkew~lT~~G~k~g~~~~dt~k 81 (110)
+-.++.+|-+.+. -++|.-.+- +.|.+.||-.. |.. + .|+.+.+||+|.+....+.....
T Consensus 25 ~~~~Gyei~~~l~~~~~~~i~~g~lY~~L~rLe~~g~I~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~~~~ 96 (116)
T 3hhh_A 25 KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPXRKFYRLTSSGEAELADFWQRWT 96 (116)
T ss_dssp SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 998899999999983897889766499999999779679998554789875699989889999999999999
No 99
>>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:191-232,A:344-415)
Probab=25.83 E-value=11 Score=19.04 Aligned_cols=22 Identities=9% Similarity=-0.152 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCHHCCCCCEEEEEECC
Q ss_conf 56445642010001588602888408
Q gi|254780987|r 70 AKGGGRYFDTGKKRSDGTIVQQIKWH 95 (110)
Q Consensus 70 ~k~g~~~~dt~k~h~nG~sv~QlrW~ 95 (110)
+|.|+-|.+|+.+| -+||+||-
T Consensus 31 e~~~r~~~yt~~HH----yGYs~R~~ 52 (114)
T 2q1f_A 31 EKRFRDXIYTKGHH----YGYSVRGL 52 (114)
T ss_dssp HHHHHHHHCCCCTT----GGGTTTTH
T ss_pred HHHHHHHHCCCCCC----CCCCHHHH
T ss_conf 99999875058845----26112236
No 100
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=25.52 E-value=17 Score=17.99 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHC
Q ss_conf 57651899999987778-89899999999879812202
Q gi|254780987|r 20 NLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEH 56 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~ 56 (110)
..+-.++++|++.++-. .++-++-+.|.+.||-....
T Consensus 15 ~~~~~t~~ela~~~~~~~~~vsr~i~~L~~~g~I~r~~ 52 (65)
T 2nnn_A 15 ETGPCPQNQLGRLTAXDAATIKGVVERLDKRGLIQRSA 52 (65)
T ss_dssp HHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 87993999999987878531428999998678804645
No 101
>>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75)
Probab=25.07 E-value=57 Score=15.21 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 651899999987778898999999998
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLRE 48 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~ 48 (110)
.-.++.+|.++|+ +|+-++.++|..
T Consensus 40 ~G~s~r~iArrf~--VS~stv~kwl~R 64 (75)
T 2k27_A 40 QGVRPCDISRQLR--VSHGCVSKILGR 64 (75)
T ss_dssp HTCCHHHHHHHHT--CCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 5998999998877--659899999999
No 102
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=24.83 E-value=57 Score=15.19 Aligned_cols=59 Identities=8% Similarity=-0.089 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCC
Q ss_conf 576518999999877788989999---9999879812202577532011611356445642010
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTG 80 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~ 80 (110)
+.+..+..+|.+.++ +|.-.+. +.|.++||-.....+.+..|.+++++-+..-.++...
T Consensus 26 ~~~~~~v~eL~~~l~--is~s~vs~HL~~L~~~GlV~~~~~g~~~~y~l~~~~~~~~~~~l~~~ 87 (95)
T 1u2w_A 26 QDEELCVCDIANILG--VTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAH 87 (95)
T ss_dssp HSSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHHHHHHHHHHHHHH
T ss_conf 879906999998884--57007999999999889258999888999998869999999999999
No 103
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=24.06 E-value=59 Score=15.10 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHH
Q ss_conf 65765189999998777889899999---99987981220
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEE 55 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~ 55 (110)
.+.++++..+|.+.|+ +|.+.|-+ .|.+.|+-...
T Consensus 15 ~~~~~is~~ela~~l~--vS~~Ti~rdi~~L~~~G~~i~~ 52 (64)
T 1bia_A 15 ANGEFHSGEQLGETLG--MSRAAINKHIQTLRDWGVDVFT 52 (64)
T ss_dssp TTSSCBCHHHHHHHHT--SCHHHHHHHHHHHHHTTCCCEE
T ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 5699468999999979--8999999999999976961999
No 104
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=23.54 E-value=61 Score=15.05 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 76518999999877788989999---99998798122025775320116113564456420
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~d 78 (110)
++-++..||.+.+| +|--.|- +.|.++||-.....+...-|.+++++-........
T Consensus 32 ~~~~~v~eLa~~l~--~s~stvS~HL~~L~~~glV~~~~~G~~~~Y~l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 32 DGVCYPGQLAAHLG--LTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV 90 (118)
T ss_dssp TTCCSTTTHHHHHS--SCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCHHHHHHHHHHH
T ss_conf 19947999999988--566569999999988892179998898999988199999999999
No 105
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=23.21 E-value=62 Score=15.01 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 57651899999987778898999999998
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKKLRE 48 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~lL~~ 48 (110)
++.-.+.++|++++| +|...|...+..
T Consensus 14 ~dar~s~~elA~~lg--is~~~v~~Ri~~ 40 (53)
T 3i4p_A 14 EDSTLAVADLAKKVG--LSTTPCWRRIQK 40 (53)
T ss_dssp TCSCSCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 858999999999989--199999999999
No 106
>>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} (A:)
Probab=22.80 E-value=63 Score=14.96 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHC---CCCCCCEEECHHHHHHHHH
Q ss_conf 6518999999877788989999999---9879812202---5775320116113564456
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEH---ESGRKRDVLTPKGAKGGGR 75 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~---~~grkew~lT~~G~k~g~~ 75 (110)
+-.+.-+|-+.+.+ +|.+..++.| .+.||-.... .+.+-+|.||++|+.....
T Consensus 47 g~~rf~el~~~l~g-iS~~~Ls~rLk~L~~~Glv~R~~~~~~p~~v~Y~LT~~G~~l~~i 105 (131)
T 1yyv_A 47 GTHRFSDLRRXXGG-VSEXXLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDX 105 (131)
T ss_dssp CCEEHHHHHHHSTT-CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99869999988333-105889999999997793155525888734999970879999999
No 107
>>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} (A:1-46)
Probab=21.29 E-value=59 Score=15.12 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=16.2
Q ss_pred ECCHHHHHHHHHHHCCCC
Q ss_conf 408459999888643789
Q gi|254780987|r 93 KWHPPIVESLAPEFGGVR 110 (110)
Q Consensus 93 rW~~sVv~~L~~E~g~~~ 110 (110)
-|++.|.+-|++|.-||.
T Consensus 29 ~w~ekvaew~arelegiq 46 (46)
T 1ji8_A 29 DWDEKVAEWLARELEGIQ 46 (46)
T ss_dssp GCCHHHHHHHHHHHTCCS
T ss_pred HCCHHHHHHHHHCCCCCC
T ss_conf 569999999997314830
No 108
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77)
Probab=20.56 E-value=70 Score=14.70 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCCCCCEEECHH
Q ss_conf 76518999999877788989999---9999879812202577532011611
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESGRKRDVLTPK 68 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~grkew~lT~~ 68 (110)
++-.+++||.+.++ +|...+- +.|.++||-....++.+.-+.+++.
T Consensus 26 ~~~~~~~ela~~l~--is~stvs~HL~~L~~aglV~~~k~g~~~~y~l~~~ 74 (77)
T 2p4w_A 26 KRPYFVSELSRELG--VGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYY 74 (77)
T ss_dssp HSCEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEE
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEE
T ss_conf 19988999999989--09999999999999889738886323789855899
Done!