Query gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 22 out of 24
Neff 3.0
Searched_HMMs 13730
Date Wed Jun 1 11:04:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780987.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ctaa1 a.4.5.28 (A:5-89) Ta10 92.5 0.042 3.1E-06 30.1 3.0 62 16-79 14-78 (85)
2 d1ub9a_ a.4.5.28 (A:) Hypothet 85.1 0.3 2.2E-05 25.5 2.9 60 21-82 28-93 (100)
3 d1jjcb2 a.6.1.1 (B:400-474) Do 83.6 0.94 6.9E-05 22.8 4.9 47 18-67 1-47 (75)
4 d3deua1 a.4.5.28 (A:2-141) Tra 75.7 1.4 0.00011 21.7 3.8 72 6-79 28-106 (140)
5 d2bv6a1 a.4.5.28 (A:5-140) Tra 75.3 1.3 9.5E-05 22.0 3.5 74 6-79 31-108 (136)
6 d1jgsa_ a.4.5.28 (A:) Multiple 72.3 1.8 0.00013 21.3 3.6 57 20-78 45-107 (138)
7 d2a61a1 a.4.5.28 (A:5-143) Tra 71.9 0.7 5.1E-05 23.5 1.4 75 6-80 27-105 (139)
8 d1mkma1 a.4.5.33 (A:1-75) Tran 70.2 2.6 0.00019 20.3 4.0 53 21-76 18-71 (75)
9 d2etha1 a.4.5.28 (A:1-140) Put 66.5 3 0.00022 20.0 3.7 60 20-79 43-106 (140)
10 d1hsja1 a.4.5.28 (A:373-487) S 65.8 1 7.6E-05 22.5 1.3 75 5-81 28-110 (115)
11 d1p4xa1 a.4.5.28 (A:1-125) Sta 65.4 2.2 0.00016 20.7 2.9 75 6-80 31-111 (125)
12 d3broa1 a.4.5.28 (A:3-137) Tra 62.5 4.4 0.00032 19.1 4.0 71 6-78 26-104 (135)
13 d2hr3a1 a.4.5.28 (A:2-146) Pro 62.5 1.3 9.7E-05 21.9 1.3 57 21-79 47-109 (145)
14 d1yg2a_ a.4.5.61 (A:) Hypothet 62.5 3 0.00022 20.0 3.1 60 24-83 15-88 (178)
15 d1z91a1 a.4.5.28 (A:8-144) Org 62.1 0.86 6.2E-05 23.0 0.3 71 5-77 29-105 (137)
16 d2fxaa1 a.4.5.28 (A:6-167) Pro 60.9 1.2 8.5E-05 22.2 0.8 77 5-81 37-117 (162)
17 d1lj9a_ a.4.5.28 (A:) Transcri 59.9 1.9 0.00014 21.1 1.8 72 5-79 25-103 (144)
18 d2fbha1 a.4.5.28 (A:8-144) Tra 59.2 2.9 0.00021 20.1 2.5 73 5-79 24-103 (137)
19 d1j5ya1 a.4.5.1 (A:3-67) Putat 57.6 4.5 0.00033 19.1 3.3 34 20-55 19-55 (65)
20 d1xmka1 a.4.5.19 (A:294-366) Z 54.5 2.9 0.00021 20.1 1.9 46 24-70 20-67 (73)
21 d1p4xa2 a.4.5.28 (A:126-250) S 54.0 2.7 0.00019 20.3 1.7 66 17-82 43-112 (125)
22 d1s3ja_ a.4.5.28 (A:) Putative 53.3 2.4 0.00017 20.6 1.3 60 20-79 46-109 (143)
23 d1t1ea2 d.58.3.2 (A:12-190) Pr 52.2 8 0.00058 17.7 5.3 68 10-80 47-117 (179)
24 d1lnwa_ a.4.5.28 (A:) MexR rep 51.6 4.1 0.0003 19.3 2.3 57 21-79 48-110 (141)
25 d2frha1 a.4.5.28 (A:102-216) P 50.9 2.7 0.00019 20.3 1.3 72 6-79 30-109 (115)
26 d1gdta1 a.4.1.2 (A:141-183) ga 49.5 6.4 0.00046 18.2 3.0 27 21-49 16-42 (43)
27 d1sfua_ a.4.5.19 (A:) 34L {Yab 44.1 9.8 0.00071 17.2 3.3 29 19-49 20-48 (70)
28 d2fbia1 a.4.5.28 (A:5-140) Pro 44.0 3.1 0.00023 19.9 0.7 72 6-79 27-104 (136)
29 d2fbka1 a.4.5.28 (A:8-179) Tra 38.0 10 0.00076 17.1 2.6 58 22-79 78-139 (172)
30 d1k78a1 a.4.1.5 (A:19-81) Pax- 36.4 14 0.0011 16.3 3.5 25 22-48 29-53 (63)
31 d2esha1 a.4.5.61 (A:4-117) Hyp 34.9 11 0.00078 17.0 2.3 56 24-79 24-93 (114)
32 d1z7ua1 a.4.5.69 (A:1-108) Hyp 33.3 16 0.0012 16.0 4.8 55 22-77 31-91 (108)
33 d1yyva1 a.4.5.69 (A:9-122) Put 31.6 17 0.0013 15.9 4.3 54 22-76 36-95 (114)
34 d1stza1 a.4.5.51 (A:14-100) He 31.2 18 0.0013 15.8 4.8 48 24-74 24-75 (87)
35 d1biaa1 a.4.5.1 (A:1-63) Bioti 31.2 18 0.0013 15.8 3.8 34 20-55 16-52 (63)
36 d2o3fa1 a.4.1.20 (A:1-83) Puta 25.2 19 0.0014 15.6 2.3 34 17-52 30-63 (83)
37 d1xmaa_ a.4.5.61 (A:) Predicte 21.9 20 0.0014 15.6 1.7 55 24-78 21-89 (103)
38 d1ku9a_ a.4.5.36 (A:) DNA-bind 21.3 28 0.002 14.8 3.0 46 23-70 41-92 (151)
39 d2p7vb1 a.4.13.2 (B:546-613) S 20.7 28 0.0021 14.7 3.7 27 21-49 23-49 (68)
40 d2hzta1 a.4.5.69 (A:4-98) Puta 20.6 28 0.0021 14.7 5.4 54 22-76 23-82 (95)
No 1
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=92.48 E-value=0.042 Score=30.09 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHC
Q ss_conf 88765765189999998777889899999---99987981220257753201161135644564201
Q gi|254780987|r 16 PTPNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 16 P~~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt 79 (110)
+.-.+.+.+|+++|+++++ +|.-.|.+ .|.+.||-............+|++|+.....+...
T Consensus 14 ~~~~~~~~lt~~eLa~~l~--i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~~~ 78 (85)
T d3ctaa1 14 AEASNRAYLTSSKLADMLG--ISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFAD 78 (85)
T ss_dssp TTTSSEEECCHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHHHHHHHHHHHH
T ss_conf 6015899988999999988--7887899999999987980431245543000789999999999999
No 2
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=85.10 E-value=0.3 Score=25.48 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCCHH
Q ss_conf 765189999998777889899999---999879812202577---53201161135644564201000
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTGKK 82 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~k~ 82 (110)
.+..+.++|.+.++ ++.-.+.. .|.+.||=......+ +..+.+||+|++.+..+.+..++
T Consensus 28 ~~~~~~~eLa~~l~--is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~~~~ 93 (100)
T d1ub9a_ 28 RRKAPFSQIQKVLD--LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKA 93 (100)
T ss_dssp HSEEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEHHHHHHHHH--HCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79901999999986--2543230999988231036888757677653455789999999999999999
No 3
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=83.64 E-value=0.94 Score=22.76 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECH
Q ss_conf 76576518999999877788989999999987981220257753201161
Q gi|254780987|r 18 PNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTP 67 (110)
Q Consensus 18 ~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~ 67 (110)
|+..-.+++-.+-+.+|..+|...+.++|..+||+.+ ...+.|..|.
T Consensus 1 PP~~I~l~~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~---~~~~~~~V~v 47 (75)
T d1jjcb2 1 PPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVE---GEGPTYRVTP 47 (75)
T ss_dssp CCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEE---CSSSSEEEEC
T ss_pred CCEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCCEE---ECCCCEEEEC
T ss_conf 9957997999999973988899999999998097228---6588279961
No 4
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=75.75 E-value=1.4 Score=21.75 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=45.2
Q ss_pred CCCHHHHHCCCCC-CCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHH
Q ss_conf 2233665158887-657651899999987778898999999---99879812202577---5320116113564456420
Q gi|254780987|r 6 GVNVLQDINLPTP-NNLPYYTPTQLGKKLATKPSAIKVNKK---LREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 6 ~~~~~~~~~LP~~-~~~~~ltPTqlGk~lg~k~SA~~vN~l---L~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~d 78 (110)
|++..|-.-|-.= +..+..|+++|++.++ ++...+.+. |...||-.....+. .+...+||+|++....+..
T Consensus 28 glt~~~~~~L~~l~~~~~~~t~~~la~~l~--i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~~~~~ 105 (140)
T d3deua1 28 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIG--IEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 105 (140)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHT--SCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 979999999999987499956999999978--777678899999970897775166789881056889889999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780987|r 79 T 79 (110)
Q Consensus 79 t 79 (110)
.
T Consensus 106 ~ 106 (140)
T d3deua1 106 V 106 (140)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=75.32 E-value=1.3 Score=22.00 Aligned_cols=74 Identities=12% Similarity=0.025 Sum_probs=46.4
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877-7889899999999879812202577-53--201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~dt 79 (110)
|++..|-.-|-.=...+-.++++|++.++ .+.+..++=+.|...||-.....+. ++ ...+|++|++....+...
T Consensus 31 glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 108 (136)
T d2bv6a1 31 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNA 108 (136)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 979999999999972899799999999797883799999999978987974347766403211489899999999999
No 6
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=72.33 E-value=1.8 Score=21.27 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC--CC-CCEEECHHHHHHHHHHHH
Q ss_conf 5765189999998777889899999---99987981220257--75-320116113564456420
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES--GR-KRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~--gr-kew~lT~~G~k~g~~~~d 78 (110)
+.+..|+++|++.++ ++...++. .|.+.||-.....+ +| +...+|++|++....+..
T Consensus 45 ~~~~~t~~ela~~~~--i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 107 (138)
T d1jgsa_ 45 CAACITPVELKKVLS--VDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ 107 (138)
T ss_dssp HHSSBCHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 180989999999978--788579999998730787798631688873698989878999999999
No 7
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=71.91 E-value=0.7 Score=23.47 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHCC
Q ss_conf 2233665158887657651899999987778-89899999999879812202577---532011611356445642010
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATK-PSAIKVNKKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDTG 80 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k-~SA~~vN~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt~ 80 (110)
|++..|-.-|-+=.+.+-.++++|.++++-. .+.-.+=+.|...||-....... .+...+|++|++....+....
T Consensus 27 glt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~ 105 (139)
T d2a61a1 27 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERR 105 (139)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf 9799999999999976998999999983988144269999998457256632168888678898989999999999999
No 8
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=70.19 E-value=2.6 Score=20.34 Aligned_cols=53 Identities=25% Similarity=0.170 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHH
Q ss_conf 76518999999877-788989999999987981220257753201161135644564
Q gi|254780987|r 21 LPYYTPTQLGKKLA-TKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 21 ~~~ltPTqlGk~lg-~k~SA~~vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~ 76 (110)
..-++.++|.+.++ ++.++.++=+-|.+.||-. +...+.|.++++--..|...
T Consensus 18 ~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~---~~~~g~y~lG~~l~~lg~~~ 71 (75)
T d1mkma1 18 PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL---RKKDKRYVPGYKLIEYGSFV 71 (75)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE---ECTTSCEEECTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE---ECCCCCEEECHHHHHHHHHH
T ss_conf 9998999999997919999999999999889988---89999786329999999999
No 9
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=66.54 E-value=3 Score=20.03 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC
Q ss_conf 5765189999998777-889899999999879812202577-5--3201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110)
+.+-.|+++|+++++- +.++-++=+.|.+.||-.....+. + +...+|++|+.....+...
T Consensus 43 ~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 106 (140)
T d2etha1 43 LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSN 106 (140)
T ss_dssp HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf 8699599999999896987999999999878896663133445325540389899999999999
No 10
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=65.80 E-value=1 Score=22.51 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=47.3
Q ss_pred HCCCHHHH--HCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHH
Q ss_conf 12233665--1588876576518999999877788989999---9999879812202577--5-3201161135644564
Q gi|254780987|r 5 LGVNVLQD--INLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRY 76 (110)
Q Consensus 5 ~~~~~~~~--~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~ 76 (110)
+|++..|- |..-+-++.+-.++++|+++++ ++.-.+. +.|.+.||-....... | ....+|++|++....+
T Consensus 28 ~~Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~--~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 28 FNLNYEEIYILNHILRSESNEISSKEIAKCSE--FKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSC--CCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHH
T ss_conf 59999999999999806899948999999978--8853599999999986876987604778458989998999999999
Q ss_pred HHCCH
Q ss_conf 20100
Q gi|254780987|r 77 FDTGK 81 (110)
Q Consensus 77 ~dt~k 81 (110)
.....
T Consensus 106 ~~~~~ 110 (115)
T d1hsja1 106 ISELE 110 (115)
T ss_dssp HHHHG
T ss_pred HHHHH
T ss_conf 99999
No 11
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=65.43 E-value=2.2 Score=20.73 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=46.4
Q ss_pred CCCHHHHHCC--CCCCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC
Q ss_conf 2233665158--88765765189999998777889-899999999879812202577-5--3201161135644564201
Q gi|254780987|r 6 GVNVLQDINL--PTPNNLPYYTPTQLGKKLATKPS-AIKVNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~L--P~~~~~~~ltPTqlGk~lg~k~S-A~~vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110)
|.+..|-.-| -+.+.++-+++++|.+.++-..| .-.+=+.|.+.||-....... + ..-.+||+|++....+.+.
T Consensus 31 ~Lt~~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 110 (125)
T d1p4xa1 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (125)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 99889999999999843698679999999688824399999999988981021235898737988899999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780987|r 80 G 80 (110)
Q Consensus 80 ~ 80 (110)
-
T Consensus 111 ~ 111 (125)
T d1p4xa1 111 F 111 (125)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 12
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=62.50 E-value=4.4 Score=19.12 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=45.3
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHH
Q ss_conf 22336651--588876576518999999877788989999---9999879812202577---532011611356445642
Q gi|254780987|r 6 GVNVLQDI--NLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 6 ~~~~~~~~--~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~ 77 (110)
|++..|-. ..-+.+..+..|+++|.+.++ ++.-.+. +.|.+.||-....... .+...+||+|++....+.
T Consensus 26 glt~~q~~vL~~l~~~~~~~it~~ela~~~~--~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 103 (135)
T d3broa1 26 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFS--IKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 103 (135)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999999970799999999999989--68868999999998888888886100256665204577999999999
Q ss_pred H
Q ss_conf 0
Q gi|254780987|r 78 D 78 (110)
Q Consensus 78 d 78 (110)
.
T Consensus 104 ~ 104 (135)
T d3broa1 104 S 104 (135)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 13
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=62.48 E-value=1.3 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC-CC--CCEEECHHHHHHHHHHHHC
Q ss_conf 76518999999877788989999---999987981220257-75--3201161135644564201
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES-GR--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~-gr--kew~lT~~G~k~g~~~~dt 79 (110)
.+-.|+++|.++++ ++.-.+. +.|...||-.....+ .+ ..-.+|++|++....+...
T Consensus 47 ~g~~t~~~La~~~~--~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 109 (145)
T d2hr3a1 47 GGDVTPSELAAAER--MRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAK 109 (145)
T ss_dssp TSCBCHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99979999999979--8988999999999876986763275401577733678999999999999
No 14
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=62.46 E-value=3 Score=20.04 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=39.1
Q ss_pred CCHHHHHHHHCC------CCCHHHH---HHHHHHCCCCHHH-----CCCCCCCEEECHHHHHHHHHHHHCCHHC
Q ss_conf 189999998777------8898999---9999987981220-----2577532011611356445642010001
Q gi|254780987|r 24 YTPTQLGKKLAT------KPSAIKV---NKKLREWGFLLEE-----HESGRKRDVLTPKGAKGGGRYFDTGKKR 83 (110)
Q Consensus 24 ltPTqlGk~lg~------k~SA~~v---N~lL~~~GlQ~~~-----~~~grkew~lT~~G~k~g~~~~dt~k~h 83 (110)
.+.-||-+.+.- ++|--.+ =+.|.+.||-... .++.|+.+.+|++|++.+..|..++..+
T Consensus 15 ~~GYei~~~~~~~~~~~w~~s~g~iY~~L~kLe~~Gli~~~~~~~~~~~~rk~Y~iT~~Gr~~l~~wl~~~~~~ 88 (178)
T d1yg2a_ 15 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 88 (178)
T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCCC
T ss_conf 98999999999984884179977099999999978984778530589977637787888999999998556568
No 15
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=62.05 E-value=0.86 Score=22.99 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=43.2
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHH
Q ss_conf 122336651588876576518999999877788989999---9999879812202577--5-32011611356445642
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~ 77 (110)
+|++..|-.-|-.=...+-.++++|.+.++ ++...+. +.|...||-.....+. | +...+||+|+.....+.
T Consensus 29 ~gLt~~q~~vL~~l~~~~~~t~~~La~~~~--i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 105 (137)
T d1z91a1 29 LNITYPQYLALLLLWEHETLTVKKMGEQLY--LDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV 105 (137)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTT--CCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 496999999999987589998999999979--68888979999996500547721689888578788989999999999
No 16
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=60.88 E-value=1.2 Score=22.25 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=47.2
Q ss_pred HCCCHHHHHCCCCCCCCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCC-CCC--CEEECHHHHHHHHHHHHCC
Q ss_conf 1223366515888765765189999998777-88989999999987981220257-753--2011611356445642010
Q gi|254780987|r 5 LGVNVLQDINLPTPNNLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHES-GRK--RDVLTPKGAKGGGRYFDTG 80 (110)
Q Consensus 5 ~~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~-grk--ew~lT~~G~k~g~~~~dt~ 80 (110)
+|++..|-.-|-.=++.+-.|+++|++.++- +.+.-.+-+.|.+.||-.....+ .++ .-.+||+|.+....+....
T Consensus 37 ~~Lt~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~ 116 (162)
T d2fxaa1 37 YDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 116 (162)
T ss_dssp GTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 59998999999652118991899999997699403199899999777723420566572245225776999999999999
Q ss_pred H
Q ss_conf 0
Q gi|254780987|r 81 K 81 (110)
Q Consensus 81 k 81 (110)
.
T Consensus 117 ~ 117 (162)
T d2fxaa1 117 D 117 (162)
T ss_dssp C
T ss_pred H
T ss_conf 9
No 17
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=59.86 E-value=1.9 Score=21.06 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred HCCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHH
Q ss_conf 1223366515888-765765189999998777889899999---999879812202577-5--32011611356445642
Q gi|254780987|r 5 LGVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 5 ~~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~ 77 (110)
+|.+..|.+-|-. .++ +-.++++|++.++ ++.-.++. .|...||-.....+. + +.-.+||+|++....+.
T Consensus 25 ~~lt~~q~~iL~~i~~~-~~~t~~~la~~l~--i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 101 (144)
T d1lj9a_ 25 LSLTRGQYLYLVRVCEN-PGIIQEKIAELIK--VDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp GTCTTTHHHHHHHHHHS-TTEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHC-CCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 69899999999999828-9989999999878--24716999999999603201057889998531256888999999999
Q ss_pred HC
Q ss_conf 01
Q gi|254780987|r 78 DT 79 (110)
Q Consensus 78 dt 79 (110)
..
T Consensus 102 ~~ 103 (144)
T d1lj9a_ 102 RE 103 (144)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 18
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=59.25 E-value=2.9 Score=20.14 Aligned_cols=73 Identities=19% Similarity=0.127 Sum_probs=43.8
Q ss_pred HCCCHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHH
Q ss_conf 1223366515888-76576518999999877788989999---9999879812202577-5--32011611356445642
Q gi|254780987|r 5 LGVNVLQDINLPT-PNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 5 ~~~~~~~~~~LP~-~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~ 77 (110)
+|++..|-.-|-. .++.+-.++.+|.+.++ ++.-.+. +.|...||-.....+. + ....+||+|++....+.
T Consensus 24 ~glt~~q~~iL~~l~~~~~~~t~~~la~~~~--~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 101 (137)
T d2fbha1 24 LGLSQARWLVLLHLARHRDSPTQRELAQSVG--VEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 101 (137)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf 5979999999999987699976999999989--78989999999999857720057778888111206898999999999
Q ss_pred HC
Q ss_conf 01
Q gi|254780987|r 78 DT 79 (110)
Q Consensus 78 dt 79 (110)
..
T Consensus 102 ~~ 103 (137)
T d2fbha1 102 AI 103 (137)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 19
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=57.62 E-value=4.5 Score=19.08 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHH
Q ss_conf 5765189999998777889899999---99987981220
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNK---KLREWGFLLEE 55 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~ 55 (110)
...+++..+|.+.|+ +|.+.+-+ .|.+.|+.+..
T Consensus 19 ~~~~vs~~~La~~l~--VS~~TI~rdi~~L~~~G~~I~~ 55 (65)
T d1j5ya1 19 SKEPVSGAQLAEELS--VSRQVIVQDIAYLRSLGYNIVA 55 (65)
T ss_dssp CSSCBCHHHHHHHHT--SCHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEE
T ss_conf 599785999999979--8999999999999987992799
No 20
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.52 E-value=2.9 Score=20.12 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=32.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCCC--CCCEEECHHHH
Q ss_conf 189999998777889899999999879812202577--53201161135
Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESG--RKRDVLTPKGA 70 (110)
Q Consensus 24 ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ~~~~~~g--rkew~lT~~G~ 70 (110)
-++-+|.+.||-+ .|+.||..|-+.-=|-..++.+ -..|.+|++..
T Consensus 20 ~~Al~iak~lGl~-kakeVN~~LY~L~k~g~v~k~~~tPP~W~L~~~~~ 67 (73)
T d1xmka1 20 SSALNLAKNIGLT-KARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKR 67 (73)
T ss_dssp EEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHH
T ss_pred CHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCEECCCCCCCCEEEECCHH
T ss_conf 4399999994997-07887599999998778012799899545320210
No 21
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=54.02 E-value=2.7 Score=20.31 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHCCCC--C-CCEEECHHHHHHHHHHHHCCHH
Q ss_conf 8765765189999998777889-899999999879812202577--5-3201161135644564201000
Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPS-AIKVNKKLREWGFLLEEHESG--R-KRDVLTPKGAKGGGRYFDTGKK 82 (110)
Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~S-A~~vN~lL~~~GlQ~~~~~~g--r-kew~lT~~G~k~g~~~~dt~k~ 82 (110)
+.++++-+++++|.+.++-..| .-++=+.|.+.||-.....++ | ..-.+|++|++....+...-.+
T Consensus 43 ~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~~l~~~~~~ 112 (125)
T d1p4xa2 43 TSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQVNQ 112 (125)
T ss_dssp HTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9803788369999999789842499999999800577654217888757887899999999999999999
No 22
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=53.25 E-value=2.4 Score=20.60 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHCCCC-C--CCEEECHHHHHHHHHHHHC
Q ss_conf 5765189999998777-889899999999879812202577-5--3201161135644564201
Q gi|254780987|r 20 NLPYYTPTQLGKKLAT-KPSAIKVNKKLREWGFLLEEHESG-R--KRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~-k~SA~~vN~lL~~~GlQ~~~~~~g-r--kew~lT~~G~k~g~~~~dt 79 (110)
+.+-.++++|.+.++- +.+.-++-+.|...||-.....+. + +.-.+|++|++....+...
T Consensus 46 ~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~~~ 109 (143)
T d1s3ja_ 46 KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAG 109 (143)
T ss_dssp HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 7799899999999896988999999999973400131013788713778898899999999999
No 23
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain {Bacillus sp. MN-32 [TaxId: 198803]}
Probab=52.23 E-value=8 Score=17.72 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=42.4
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCCHHHCCCCCCCEEECHHHHHHHHHHHHCC
Q ss_conf 66515888765765189999998777889899---999999879812202577532011611356445642010
Q gi|254780987|r 10 LQDINLPTPNNLPYYTPTQLGKKLATKPSAIK---VNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTG 80 (110)
Q Consensus 10 ~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~---vN~lL~~~GlQ~~~~~~grkew~lT~~G~k~g~~~~dt~ 80 (110)
++...-++|+--.|||+-|+..+++| |... |-.+|...||+......++ .|.--..--.-.+.++.|.
T Consensus 47 l~~~~p~sp~yg~~Lt~~e~~~~f~p--s~~~~~~V~~wL~~~Gl~v~~~~~~~-~~v~~~gtv~~ve~af~t~ 117 (179)
T d1t1ea2 47 VERQAALAPHARVHLEREAFAASHGA--SLDDFAEIRKFAEAHGLTLDRAHVAA-GTAVLSGPVDAVNQAFGVE 117 (179)
T ss_dssp HHHHTTSCTTSCCCCCHHHHHHHHSC--CHHHHHHHHHHHHHTTCEEEEEETTT-TEEEEEEEHHHHHHHHTCC
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCEEEECCC-CEEEEEEEHHHHHHHHCCC
T ss_conf 86008899521555799999988787--99999999999987689615884699-8899982399999975884
No 24
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=51.63 E-value=4.1 Score=19.29 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHHHHHHHHHHC
Q ss_conf 76518999999877788989999---9999879812202577-53--201161135644564201
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~k~g~~~~dt 79 (110)
.+-.++++|++.++ +|--.|. +.|.+.||-.....++ ++ ...+|++|.+.-..+...
T Consensus 48 ~~~~t~~~la~~l~--~~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 110 (141)
T d1lnwa_ 48 QRGLNLQDLGRQMC--RDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQHAEAI 110 (141)
T ss_dssp STTCBHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 79989999999978--4573799999999983230110347887611120689899999999999
No 25
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=50.93 E-value=2.7 Score=20.31 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=44.4
Q ss_pred CCCHHHHHCC--CCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCC--CCC-CEEECHHHHHHHHHHH
Q ss_conf 2233665158--8876576518999999877788989999---999987981220257--753-2011611356445642
Q gi|254780987|r 6 GVNVLQDINL--PTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHES--GRK-RDVLTPKGAKGGGRYF 77 (110)
Q Consensus 6 ~~~~~~~~~L--P~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~--grk-ew~lT~~G~k~g~~~~ 77 (110)
|++..|-.-| -+.++++-+++++|.+.++ +|.-.+. +.|.+.||-.....+ .|. .-.+||+|.+.-+.+.
T Consensus 30 ~Ls~~q~~vL~~l~~~~~~~~t~~~la~~l~--~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 107 (115)
T d2frha1 30 SISFEEFAVLTYISENKEKEYYLKDIINHLN--YKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 107 (115)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSS--SHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9899999999999808999988999999979--78868999999998466513210136786479898988999999999
Q ss_pred HC
Q ss_conf 01
Q gi|254780987|r 78 DT 79 (110)
Q Consensus 78 dt 79 (110)
..
T Consensus 108 ~~ 109 (115)
T d2frha1 108 SR 109 (115)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 26
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=49.53 E-value=6.4 Score=18.25 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 76518999999877788989999999987
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
++-+.||+|.+.|| ||-..|-++|.++
T Consensus 16 ~~G~gat~IAk~lg--I~R~SVYR~L~~~ 42 (43)
T d1gdta1 16 QQGLGASHISKTMN--IARSTVYKVINES 42 (43)
T ss_dssp HTTCCHHHHHHHHT--CCHHHHHHHHHSC
T ss_pred HCCCCHHHHHHHHC--CCHHHHHHHHHHC
T ss_conf 94898999999979--8799999998601
No 27
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=44.14 E-value=9.8 Score=17.24 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 6576518999999877788989999999987
Q gi|254780987|r 19 NNLPYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 19 ~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
.+.++.+.-+|.+.|| ++.+.||+.|-..
T Consensus 20 ~~~~~~tA~~LAk~Lg--~~Kk~VNr~LY~L 48 (70)
T d1sfua_ 20 NTNDYTTAISLSNRLK--INKKKINQQLYKL 48 (70)
T ss_dssp CTTCEECHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHC--CCHHHHHHHHHHH
T ss_conf 8777704999999959--8898988999999
No 28
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.01 E-value=3.1 Score=19.92 Aligned_cols=72 Identities=15% Similarity=-0.005 Sum_probs=44.9
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC---CCCEEECHHHHHHHHHHHHC
Q ss_conf 22336651588876576518999999877788989999---9999879812202577---53201161135644564201
Q gi|254780987|r 6 GVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG---RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 6 ~~~~~~~~~LP~~~~~~~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g---rkew~lT~~G~k~g~~~~dt 79 (110)
|++..|-.-|-.=.+.+-.++.+|++.++ ++.-.+. +.|.+.||-....... .+...+|++|.+....+...
T Consensus 27 glt~~q~~vL~~l~~~~~~t~~~la~~~~--i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 104 (136)
T d2fbia1 27 GLTEQQWRVIRILRQQGEMESYQLANQAC--ILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGD 104 (136)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 97999999999999769989999999988--7898899999999988997984557657503330589899999999999
No 29
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.96 E-value=10 Score=17.07 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHCCC--C-CCCEEECHHHHHHHHHHHHC
Q ss_conf 6518999999877788-989999999987981220257--7-53201161135644564201
Q gi|254780987|r 22 PYYTPTQLGKKLATKP-SAIKVNKKLREWGFLLEEHES--G-RKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~-SA~~vN~lL~~~GlQ~~~~~~--g-rkew~lT~~G~k~g~~~~dt 79 (110)
+-+++++|.+.++-.. +.-++=+.|...||-.....+ . .+.-.+|++|++....+...
T Consensus 78 ~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~~~~~~ 139 (172)
T d2fbka1 78 EGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPA 139 (172)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99689999999786785799999999868984441355310467750489999999999999
No 30
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.43 E-value=14 Score=16.32 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 651899999987778898999999998
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKLRE 48 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL~~ 48 (110)
+-+++.++.++|+ +|+.+|.++|..
T Consensus 29 ~G~s~r~aA~rf~--VS~s~v~k~l~r 53 (63)
T d1k78a1 29 QGVRPCDISRQLR--VSHGCVSKILGR 53 (63)
T ss_dssp TTCCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHH
T ss_conf 5998999999959--779999999999
No 31
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=34.88 E-value=11 Score=17.02 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCHHHHHHHHCC----------CCCHHHHHHHHHHCCCCHHHCCC----CCCCEEECHHHHHHHHHHHHC
Q ss_conf 189999998777----------88989999999987981220257----753201161135644564201
Q gi|254780987|r 24 YTPTQLGKKLAT----------KPSAIKVNKKLREWGFLLEEHES----GRKRDVLTPKGAKGGGRYFDT 79 (110)
Q Consensus 24 ltPTqlGk~lg~----------k~SA~~vN~lL~~~GlQ~~~~~~----grkew~lT~~G~k~g~~~~dt 79 (110)
.+.-+|-+.+.. +-+--.+=+.|.+.||-...... .|+.+.+||+|++....+...
T Consensus 24 ~~GYei~~~i~~~~~~~~~~~~~gtiY~~L~rLe~~G~I~~~~~~~~g~~rk~Y~IT~~G~~~l~~~~~~ 93 (114)
T d2esha1 24 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 93 (114)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 6699999999996478733699773799999999889849985237898867999898899999999999
No 32
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=33.30 E-value=16 Score=16.03 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCCC---CCCCEEECHHHHHHHHHHH
Q ss_conf 6518999999877788989999999---987981220257---7532011611356445642
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHES---GRKRDVLTPKGAKGGGRYF 77 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~~ 77 (110)
+-.+..||-+.+.. +|.+-.++.| .+.||-.....+ -+-+|.+|++|+.....+.
T Consensus 31 g~~RF~el~~~l~g-IS~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~pil~ 91 (108)
T d1z7ua1 31 GTKRNGELMRALDG-ITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALS 91 (108)
T ss_dssp SCBCHHHHHHHSTT-CCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHCHHHHHHHHHHH
T ss_conf 99889999977737-77668999999999789503431577765321132660778999999
No 33
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=31.65 E-value=17 Score=15.87 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCC---CCCCCEEECHHHHHHHHHH
Q ss_conf 6518999999877788989999999---98798122025---7753201161135644564
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHE---SGRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~---~grkew~lT~~G~k~g~~~ 76 (110)
+-....||-+.+.+ +|.+...+.| .+.||-..... +-+-+|.+|++|+.....+
T Consensus 36 g~~RF~el~~~l~g-is~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~~il 95 (114)
T d1yyva1 36 GTHRFSDLRRKMGG-VSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDKV 95 (114)
T ss_dssp CCEEHHHHHHHSTT-CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999977403-3524799989999998887300257888415767517188999999
No 34
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.23 E-value=18 Score=15.83 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHH---HHHHCCCCHHHCCC-CCCCEEECHHHHHHHH
Q ss_conf 189999998777889899999---99987981220257-7532011611356445
Q gi|254780987|r 24 YTPTQLGKKLATKPSAIKVNK---KLREWGFLLEEHES-GRKRDVLTPKGAKGGG 74 (110)
Q Consensus 24 ltPTqlGk~lg~k~SA~~vN~---lL~~~GlQ~~~~~~-grkew~lT~~G~k~g~ 74 (110)
-+-.+|.+.++-+.|+..|.. .|...||-..-+.+ || +||++|-.++-
T Consensus 24 v~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~Gr---iPT~~g~r~yv 75 (87)
T d1stza1 24 VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGR---IPTDKGLRFYY 75 (87)
T ss_dssp BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCB---EECHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCHHHHHHHH
T ss_conf 67999998708898989999999999987862488877877---60588999999
No 35
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.15 E-value=18 Score=15.83 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCCHHH
Q ss_conf 57651899999987778898999999---9987981220
Q gi|254780987|r 20 NLPYYTPTQLGKKLATKPSAIKVNKK---LREWGFLLEE 55 (110)
Q Consensus 20 ~~~~ltPTqlGk~lg~k~SA~~vN~l---L~~~GlQ~~~ 55 (110)
+..+.+..+|++.|| +|-++|-+- |.+.|+....
T Consensus 16 ~~~~~s~~eLa~~l~--vS~~ti~r~i~~L~~~G~~I~~ 52 (63)
T d1biaa1 16 NGEFHSGEQLGETLG--MSRAAINKHIQTLRDWGVDVFT 52 (63)
T ss_dssp TSSCBCHHHHHHHHT--SCHHHHHHHHHHHHHTTCCCEE
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 789587999999989--3999999999999987993797
No 36
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=25.24 E-value=19 Score=15.61 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=30.0
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 876576518999999877788989999999987981
Q gi|254780987|r 17 TPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFL 52 (110)
Q Consensus 17 ~~~~~~~ltPTqlGk~lg~k~SA~~vN~lL~~~GlQ 52 (110)
.|++-.+++.++|.++.+ .|...|.+.....||.
T Consensus 30 ~~~~~~~~si~~lA~~~~--vS~sTi~Rf~kklG~~ 63 (83)
T d2o3fa1 30 HPHKAIESTVNEISALAN--SSDAAVIRLCKSLGLK 63 (83)
T ss_dssp CHHHHHTCCHHHHHHHTT--CCHHHHHHHHHHTTCS
T ss_pred CHHHHHHCCHHHHHHHHC--CCHHHHHHHHHHHCCC
T ss_conf 999998831999999979--8998999999995899
No 37
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=21.91 E-value=20 Score=15.60 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCHHHHHHHHC------CCCCHHHH---HHHHHHCCCCHHH-CC----CCCCCEEECHHHHHHHHHHHH
Q ss_conf 18999999877------78898999---9999987981220-25----775320116113564456420
Q gi|254780987|r 24 YTPTQLGKKLA------TKPSAIKV---NKKLREWGFLLEE-HE----SGRKRDVLTPKGAKGGGRYFD 78 (110)
Q Consensus 24 ltPTqlGk~lg------~k~SA~~v---N~lL~~~GlQ~~~-~~----~grkew~lT~~G~k~g~~~~d 78 (110)
.+.-+|-+.+. -.+|.-.+ =+.|.+.||-... .. ..|+.+.+||+|++....+..
T Consensus 21 ~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~~ 89 (103)
T d1xmaa_ 21 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCE 89 (103)
T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 449999999999709853589776599999999889947886316899876699989889999999999
No 38
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.26 E-value=28 Score=14.79 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHH---HHHHHCCCCHHHCCCC-CC--CEEECHHHH
Q ss_conf 518999999877788989999---9999879812202577-53--201161135
Q gi|254780987|r 23 YYTPTQLGKKLATKPSAIKVN---KKLREWGFLLEEHESG-RK--RDVLTPKGA 70 (110)
Q Consensus 23 ~ltPTqlGk~lg~k~SA~~vN---~lL~~~GlQ~~~~~~g-rk--ew~lT~~G~ 70 (110)
-+|+++|++.+| +|.-.|. +.|.+.|+-.....++ ++ --.+|++|.
T Consensus 41 plt~~ela~~l~--vsk~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~g~ 92 (151)
T d1ku9a_ 41 PLTISDIMEELK--ISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSS 92 (151)
T ss_dssp CEEHHHHHHHHT--CCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHH
T ss_pred CCCHHHHHHHHC--CCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCHHHH
T ss_conf 928999999867--7702499999999988997998747887446776788889
No 39
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=20.70 E-value=28 Score=14.72 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 76518999999877788989999999987
Q gi|254780987|r 21 LPYYTPTQLGKKLATKPSAIKVNKKLREW 49 (110)
Q Consensus 21 ~~~ltPTqlGk~lg~k~SA~~vN~lL~~~ 49 (110)
..-.|-.+||+.+| +|.-+|.++...+
T Consensus 23 ~~~~tl~eI~~~lg--iSrerVrqie~~a 49 (68)
T d2p7vb1 23 NTDYTLEEVGKQFD--VTRERIRQIEAKA 49 (68)
T ss_dssp SSCCCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHHH
T ss_conf 98688999999979--7899999999999
No 40
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=20.64 E-value=28 Score=14.71 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCCHHHCCC---CCCCEEECHHHHHHHHHH
Q ss_conf 6518999999877788989999999---987981220257---753201161135644564
Q gi|254780987|r 22 PYYTPTQLGKKLATKPSAIKVNKKL---REWGFLLEEHES---GRKRDVLTPKGAKGGGRY 76 (110)
Q Consensus 22 ~~ltPTqlGk~lg~k~SA~~vN~lL---~~~GlQ~~~~~~---grkew~lT~~G~k~g~~~ 76 (110)
+-.+..||-+.+.+ +|.+-..+.| .+.||-.....+ -+-+|.+|++|+.....+
T Consensus 23 g~~rF~el~~~l~g-is~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~pil 82 (95)
T d2hzta1 23 GKKRTSELKRLMPN-ITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGIL 82 (95)
T ss_dssp CCBCHHHHHHHCTT-SCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHH
T ss_pred CCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99979999977326-7765899999999996877300012455301324446288999999
Done!