RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>gnl|CDD|178449 PLN02858, PLN02858, fructose-bisphosphate aldolase.
          Length = 1378

 Score = 28.7 bits (64), Expect = 0.32
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 2   ESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIK 41
           E V GVN+L+        N   Y P  L K++  +   +K
Sbjct: 292 EKVFGVNILE------AANRELYKPEDLAKQITMQAKPVK 325


>gnl|CDD|179669 PRK03902, PRK03902, manganese transport transcriptional
          regulator; Provisional.
          Length = 142

 Score = 26.9 bits (60), Expect = 1.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 33 LATKPSAI-KVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGR 75
          L+  PS++ K+ +KL +  +L+ E   G    VLTPKG K G R
Sbjct: 32 LSVHPSSVTKMVQKLDKDEYLIYEKYRGL---VLTPKGKKIGKR 72


>gnl|CDD|182219 PRK10064, PRK10064, catecholate siderophore receptor CirA;
           Provisional.
          Length = 663

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 21  LPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGRYFDTG 80
           LP++T       L  KP A      L +W F +  + +G+KR         GG   ++TG
Sbjct: 568 LPFHTAN---GTLDWKPLA------LEDWSFYVSGNYTGQKRADSATAKTPGGYTIWNTG 618


>gnl|CDD|177535 PHA03131, PHA03131, dUTPase; Provisional.
          Length = 286

 Score = 25.3 bits (56), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 13  INLPTPNNLPYYTPTQLGKK-LATKPSAIKVNK 44
           ++L  P   P++ P   G+  LA+K   +K  K
Sbjct: 155 LSLCCPPISPHFVPVIFGRSGLASKGLTVKPTK 187


>gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate
           synthase family protein.  This model represents
           uncharacterized proteins related to 2-isopropylmalate
           synthases and homocitrate synthases but phylogenetically
           distint. Each species represented in the seed alignment
           also has a member of a known family of 2-isopropylmalate
           synthases.
          Length = 526

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 13  INLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLRE 48
           +NLP  +N+PY   +    K     SA++ N    E
Sbjct: 278 VNLPPDDNMPYVGRSAFAHKGGVHVSAVQRNPFTYE 313


>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
          protein.  Members of this protein family are found
          exclusively in the archaea. This set of DNA binding
          proteins shows homology to the origin recognition
          complex subunit 1/cell division control protein 6
          family in eukaryotes. Several members may be found in
          genome and interact with each other.
          Length = 365

 Score = 24.5 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 17 TPNNLPYYTPTQLGKKLATKPSAIKVNKKLRE 48
           P+N+  Y  T  GK   TK     V K+L E
Sbjct: 39 RPSNVFIYGKTGTGKTAVTK----YVMKELEE 66


>gnl|CDD|161717 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
           biosynthetic type.  Several isozymes of this enzyme are
           found in E. coli K12, one of which contains a frameshift
           in the large subunit gene and is not expressed.
          Length = 558

 Score = 24.3 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 12  DINLPTPNNLPYYTPTQLGKKLATKPSA 39
           +   P   NLP Y PT  G  L  K +A
Sbjct: 168 EYPYPEKVNLPGYRPTVKGHPLQIKKAA 195


>gnl|CDD|116082 pfam07461, NADase_NGA, Nicotine adenine dinucleotide glycohydrolase
           (NADase).  This family consists of several bacterial
           nicotine adenine dinucleotide glycohydrolase (NGA)
           proteins which appear to be specific to Streptococcus
           pyogenes. NAD glycohydrolase (NADase) is a potential
           virulence factor. Streptococcal NADase may contribute to
           virulence by its ability to cleave beta-NAD at the
           ribose-nicotinamide bond, depleting intracellular NAD
           pools and producing the potent vasoactive compound
           nicotinamide.
          Length = 446

 Score = 24.3 bits (52), Expect = 7.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 12  DINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLE--EHESGRKRDVL 65
           D+     N L  +   +LG     KP  I+++KKL      +E  E   G+ +D+L
Sbjct: 130 DVKYYNGNKLVLFHKIELGDTYTKKPHHIEIDKKLDVDRIDIEVTEVHQGQNKDIL 185


>gnl|CDD|162997 TIGR02746, TraC-F-type, type-IV secretion system protein TraC.  The
           protein family described here is common among the F, P
           and I-like type IV secretion systems. Gene symbols
           include TraC (F-type), TrbE/VirB4 (P-type) and TraU
           (I-type). The protein conyains the Walker A and B motifs
           and so is a putative nucleotide triphosphatase.
          Length = 797

 Score = 24.2 bits (53), Expect = 7.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 41  KVNKKLREWGFLLEEHESG 59
            + KKL+E  +L E   SG
Sbjct: 294 SLEKKLKEIKYLREAIASG 312


>gnl|CDD|185604 PTZ00416, PTZ00416, elongation factor 2; Provisional.
          Length = 836

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 11/48 (22%)

Query: 63  DVLTPKGAKGG---------GRYFDTGKKRSDGTIVQQIKWHPPIVES 101
           D+  P+ A GG         G     G+++  GT +  IK + P+ ES
Sbjct: 726 DITAPEDAMGGIYSVLNRRRGVVI--GEEQRPGTPLSNIKAYLPVAES 771


>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
          Length = 547

 Score = 24.2 bits (53), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 81 KKRSDGTIVQQIKW 94
          +KR DGTI   I+W
Sbjct: 57 RKRQDGTIPWYIRW 70


>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase.  The model describes
           alanine--tRNA ligase. This enzyme catalyzes the reaction
           (tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
           pyrophosphate + AMP).
          Length = 851

 Score = 23.9 bits (52), Expect = 9.0
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 13  INLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVL---TPKG 69
            N+        Y   +   K+            L E G  ++E E+G+   V+   TP  
Sbjct: 446 ANVYPATEFLGYEDLEFEAKV----------IGLFEDGKPVDEAEAGQSVYVILDQTPFY 495

Query: 70  AKGGGRYFDTGKKRSDG 86
           A+ GG+  DTG   ++ 
Sbjct: 496 AESGGQIGDTGYLIAND 512


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,856,823
Number of extensions: 104369
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 20
Length of query: 110
Length of database: 5,994,473
Length adjustment: 76
Effective length of query: 34
Effective length of database: 4,352,265
Effective search space: 147977010
Effective search space used: 147977010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)