RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>3cta_A Riboflavin kinase; structural genomics, transferase,
          PSI-2, protein structure initiative; 2.20A
          {Thermoplasma acidophilum dsm 1728} (A:1-91)
          Length = 91

 Score = 28.6 bits (64), Expect = 0.33
 Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 25 TPTQLGKKLATKPSAI-KVNKKLREWGFLLEEHESGRKRDVLTPKGAK 71
          T ++L   L     +  ++   L + G++        +   +T KG  
Sbjct: 29 TSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLD 76


>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus
          spindle virus, winged helix, fusellovirus, viral
          protein; 2.70A {Sulfolobus virus 1} (A:)
          Length = 99

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 44 KKLREWGFLLEEHESGRKRDVLTPKG 69
          K L + GF+ E  E G KR  LT KG
Sbjct: 48 KFLIQEGFVKERQERGEKRLYLTEKG 73


>2w8d_A Processed glycerol phosphate lipoteichoic acid synthase 2;
          transferase, phosphatase, cell membrane, transmembrane,
          LTA, WTA, membrane; HET: TPO PG4; 2.35A {Bacillus
          subtilis} (A:1-24,A:333-436)
          Length = 128

 Score = 24.0 bits (52), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 60 RKRDVLTPKGAKGGGRYFD--TGKKRSDGTIVQQIK 93
          R  D ++PK  K  G+Y+D  TGK+  +  + +   
Sbjct: 39 RNGDFISPKYTKISGKYYDTKTGKELDESEVDKSED 74


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 875,585
Number of extensions: 36373
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 6
Length of query: 110
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 45
Effective length of database: 2,758,724
Effective search space: 124142580
Effective search space used: 124142580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)