RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score = 26.5 bits (58), Expect = 0.57
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 31  KKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLTPKGAKGGGR 75
           +K   +     + K  R +  L EE ES     VLT KG    G 
Sbjct: 379 RKEVIRNKIRAIGKMARVFSVLREESES-----VLTLKGLTPTGM 418


>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella
          putrefaciens [TaxId: 24]}
          Length = 100

 Score = 26.5 bits (58), Expect = 0.67
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 23 YYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGRKRDVLT 66
          +YTP+++           +  +++R  G ++      R  + L 
Sbjct: 6  FYTPSEIVNGKTDTGVKPEAGQRIRVGG-MVTVGSMVRDPNSLH 48


>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli
          [TaxId: 562]}
          Length = 114

 Score = 26.4 bits (58), Expect = 0.68
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 23 YYTPTQLGKKLATKPSAIKVNKKLREWGFLLEE 55
          +YTP ++           +V ++LR  G ++  
Sbjct: 8  FYTPGEILYGKRETQQMPEVGQRLRVGGMVMPG 40


>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
          [TaxId: 562]}
          Length = 240

 Score = 24.6 bits (53), Expect = 2.1
 Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 2/26 (7%)

Query: 22 PYYTPTQLGKKLATKPSAIKVNKKLR 47
          P  T  Q G  +   P      K LR
Sbjct: 5  PVVTDAQKGIIIHYVP--ALPRKVLR 28


>d1vr6a1 c.1.10.4 (A:1-338)
          3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
          (DAHP synthase, AroG) {Thermotoga maritima [TaxId:
          2336]}
          Length = 338

 Score = 24.3 bits (52), Expect = 3.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 31 KKLATKPSAIKVNKKLREWGFLLEEHES-GRKRDVLTPKGAKGGGRYFD 78
          K  +T+    KV K    +   L+ H S G++R V+   G  G  RY  
Sbjct: 6  KPGSTEEDIRKVVKLAESYN--LKCHISKGQERTVI---GIIGDDRYVV 49


>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 23.9 bits (52), Expect = 3.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 13 INLPTPNNLPYY 24
          I+LP P+N+  +
Sbjct: 5  IDLPAPSNISSW 16


>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
          N-terminal domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 261

 Score = 23.2 bits (50), Expect = 6.9
 Identities = 4/12 (33%), Positives = 9/12 (75%)

Query: 13 INLPTPNNLPYY 24
          I+ P P+++ Y+
Sbjct: 18 IDSPQPSSINYW 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 426,281
Number of extensions: 18264
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 9
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)