BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780987|ref|YP_003065400.1| hypothetical protein
CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62]
(110 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 225 bits (573), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60
MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR
Sbjct: 1 MESVLGVNVLQDINLPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60
Query: 61 KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR 110
KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR
Sbjct: 61 KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESLAPEFGGVR 110
>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
psy62]
Length = 262
Score = 42.7 bits (99), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 4 VLGVNVLQDIN---LPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60
+ GV+ L+ ++ LP+ +N Y T TQ+G++L A +NK L + G + + G
Sbjct: 154 ITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGY 213
Query: 61 KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESL 102
+ TPKG + GG+ D + +G+ QQ+KW+ ++ S
Sbjct: 214 RP---TPKGEERGGKMCDVPMQHVEGS-TQQLKWNSNLLVSF 251
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 29.6 bits (65), Expect = 0.015, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 44 KKLREWGFLLEEHESGRKRDVL---TPKGAKGGGRYFDTGKKRSDGTIVQ 90
K + + G ++EE SG+K +V+ TP A+ GG+ DTG DG +Q
Sbjct: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 22.3 bits (46), Expect = 2.0, Method: Composition-based stats.
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 80 GKKRSDGTIVQQIKWHPPIVESL 102
G RS+ ++ + WHP +S+
Sbjct: 231 GASRSNTALIAPVAWHPRYKDSV 253
>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Liberibacter asiaticus str. psy62]
Length = 336
Score = 20.8 bits (42), Expect = 6.0, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 8 NVLQDINLPTPNNLPYYT 25
N+ +++ N LPYYT
Sbjct: 15 NIFPFLSIAETNKLPYYT 32
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 20.4 bits (41), Expect = 8.1, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 61 KRDVLTPKGAKGG 73
K V+ P GAKGG
Sbjct: 812 KNAVIVPVGAKGG 824
>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 20.4 bits (41), Expect = 8.1, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 32 KLATKPSAIKVNKKLREWGFLLEEHES 58
K+ SA + K+L GF+LE++++
Sbjct: 421 KMKKFSSADYIRKQLESKGFILEDYKN 447
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 20.4 bits (41), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 17 TPNNLPYYTPTQLGKKLATKPSA 39
T ++LP+ TP LG ++ +A
Sbjct: 207 TLHSLPFVTPLSLGPRILRSDTA 229
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,617
Number of Sequences: 1233
Number of extensions: 2869
Number of successful extensions: 10
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 32 (16.9 bits)