Query gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 151
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 39220
Date Mon May 30 02:33:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780988.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3249 consensus 79.7 2.9 7.3E-05 22.4 3.9 41 76-116 90-130 (181)
2 pfam09964 DUF2198 Uncharacteri 65.2 13 0.00032 18.7 5.2 46 100-150 28-73 (74)
3 cd05136 RasGAP_DAB2IP The DAB2 62.3 2.8 7.3E-05 22.5 0.6 21 22-42 98-118 (309)
4 KOG3508 consensus 60.9 6.6 0.00017 20.3 2.3 107 7-138 417-532 (932)
5 cd05137 RasGAP_CLA2_BUD2 CLA2/ 60.1 4.1 0.0001 21.6 1.1 22 22-43 163-184 (395)
6 cd05391 RasGAP_p120GAP p120GAP 53.6 4.1 0.00011 21.5 0.2 21 22-42 96-116 (315)
7 smart00323 RasGAP GTPase-activ 52.8 5.1 0.00013 21.0 0.6 21 22-42 121-141 (344)
8 pfam03620 IBV_3C IBV 3C protei 51.6 6.5 0.00017 20.4 1.0 28 123-151 34-61 (93)
9 KOG4112 consensus 40.6 15 0.00038 18.3 1.4 10 130-139 36-45 (101)
10 PRK10663 cytochrome o ubiquino 37.8 36 0.00092 16.1 4.3 16 95-110 187-202 (204)
11 PRK05907 hypothetical protein; 34.6 41 0.001 15.8 3.2 43 7-49 156-206 (311)
12 COG3296 Uncharacterized protei 31.3 46 0.0012 15.5 4.5 29 85-114 23-51 (143)
13 COG4626 Phage terminase-like p 29.8 25 0.00065 17.0 1.2 27 119-145 57-83 (546)
14 pfam11712 Vma12 Endoplasmic re 29.4 50 0.0013 15.3 3.2 25 84-108 76-100 (137)
15 KOG1773 consensus 28.0 33 0.00084 16.3 1.5 35 95-138 10-44 (63)
16 TIGR01434 glu_cys_ligase gluta 26.6 47 0.0012 15.4 2.1 45 60-104 151-195 (518)
17 TIGR00681 kdpC K+-transporting 26.4 49 0.0012 15.3 2.1 13 95-107 10-25 (193)
18 pfam08939 DUF1917 Domain of un 25.2 18 0.00047 17.8 -0.2 67 15-89 88-154 (237)
19 pfam07169 consensus 24.4 62 0.0016 14.7 4.2 45 97-141 47-108 (265)
20 pfam10755 DUF2585 Protein of u 21.4 67 0.0017 14.5 2.1 33 94-127 124-156 (165)
21 pfam11351 DUF3154 Protein of u 20.4 74 0.0019 14.2 6.2 93 42-151 21-122 (123)
No 1
>KOG3249 consensus
Probab=79.74 E-value=2.9 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77521238887888997899999999999999877430432
Q gi|254780988|r 76 QFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYL 116 (151)
Q Consensus 76 ~~~~~~k~~~~f~alirp~tt~fwii~yplliww~v~~g~~ 116 (151)
+.+--+-|..+|-.++--.--++|+++||+-+||..---+|
T Consensus 90 ~~~lp~~w~~~~ls~~~~v~vllW~vL~~ia~~l~fGlvff 130 (181)
T KOG3249 90 KLKLPDIWLMFSLSLKMWVIVLLWFVLAPIAHRLDFGLVFF 130 (181)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67771188876643447999999999999999997519999
No 2
>pfam09964 DUF2198 Uncharacterized protein conserved in bacteria (DUF2198). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=65.18 E-value=13 Score=18.72 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999998774304326474455333478899999988765789876408
Q gi|254780988|r 100 IILYPLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150 (151)
Q Consensus 100 ii~yplliww~v~~g~~~~dpltll~pftq~iiacilgfw~td~ivq~~kg 150 (151)
+++---|+-=|+.|||+.+-.+-.+ |+..-..|||+.|+.-.++|.
T Consensus 28 ~llt~aLi~AS~yKGyt~~~~ii~i-----D~~Sl~aGf~~a~~m~~~k~~ 73 (74)
T pfam09964 28 LLLTVALIAASYYKGYTETEWIIVI-----DAASLTAGFLYADQMEFHKKQ 73 (74)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998345576203465-----599998799999999987626
No 3
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=62.29 E-value=2.8 Score=22.47 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999633430432542101
Q gi|254780988|r 22 NLLEEYIMKEKSIEHDRLRLE 42 (151)
Q Consensus 22 ~~~~ey~~k~~sie~d~l~le 42 (151)
+++.+-+..++|.|-|-.|+.
T Consensus 98 p~I~~i~~~~~s~EvDPsK~~ 118 (309)
T cd05136 98 EFIRALYESEENCEVDPSKCS 118 (309)
T ss_pred HHHHHHHHCCCCEEECCCCCC
T ss_conf 999999808987645812288
No 4
>KOG3508 consensus
Probab=60.89 E-value=6.6 Score=20.34 Aligned_cols=107 Identities=29% Similarity=0.284 Sum_probs=62.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 489999999---83127999999963343043254210120034412300997215786003444421117777521238
Q gi|254780988|r 7 GSIARFFIK---FVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQFERESKA 83 (151)
Q Consensus 7 g~~~rf~~~---fvps~f~~~~ey~~k~~sie~d~l~le~ak~~sttq~dl~~~~~~~pvrlar~~~qaned~~~~~~k~ 83 (151)
.|||+=|+- ..||+|++..||.-+.-+- ---+||| -+||+||--+|...++.
T Consensus 417 aSLFlR~lCpaI~spslF~l~~eYp~~~tsr----tLtlIak---------------------~lQnlan~skfg~ke~~ 471 (932)
T KOG3508 417 ASLFLRFLCPAILSPSLFNLAQEYPSPTTAR----TLTLIAK---------------------VLQNLANFSKFGGKEKR 471 (932)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH----HHHHHHH---------------------HHHHHHHHCCCCCHHHH
T ss_conf 8666010208775477754454168974167----8999999---------------------99998742366652789
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 88788899---7899999999999999--87743043264-74455333478899999988
Q gi|254780988|r 84 MIFFNALI---RPFTTLFWIILYPLLI--WWGVEKGYLTK-DPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 84 ~~~f~ali---rp~tt~fwii~yplli--ww~v~~g~~~~-dpltll~pftq~iiacilgf 138 (151)
|-|.|-+. -+--+.||--+|-.-. =-.+-+|++.- --+..+.-|-+|+..-+.|-
T Consensus 472 m~fmn~fleh~~~~mk~flk~isnp~~l~~~~~~~~~~dlg~Els~l~~~L~e~l~~l~~~ 532 (932)
T KOG3508 472 MRFMNEFLEHEWEAMKLFLKRISNPSCLNNVKNAKGIVDLGLELSWLHEFLWEDLPPLSGL 532 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 9999999999999998899971785556654101213111344007999999871213335
No 5
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=60.07 E-value=4.1 Score=21.56 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999996334304325421012
Q gi|254780988|r 22 NLLEEYIMKEKSIEHDRLRLEI 43 (151)
Q Consensus 22 ~~~~ey~~k~~sie~d~l~le~ 43 (151)
+++.+-...+++.|-|--|++-
T Consensus 163 ~~I~~I~e~~k~cEvDPsrl~~ 184 (395)
T cd05137 163 AKIREINEEDPSCEVDPSRISE 184 (395)
T ss_pred HHHHHHHHCCCCEEECHHHCCC
T ss_conf 9999998068883178243167
No 6
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=53.62 E-value=4.1 Score=21.53 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999633430432542101
Q gi|254780988|r 22 NLLEEYIMKEKSIEHDRLRLE 42 (151)
Q Consensus 22 ~~~~ey~~k~~sie~d~l~le 42 (151)
+++.+-+..+++.|-|-.|++
T Consensus 96 ~~I~~i~~~~~~~EvDP~k~~ 116 (315)
T cd05391 96 DSILKIMESKQSCELNPSKLE 116 (315)
T ss_pred HHHHHHHCCCCCCCCCHHHCC
T ss_conf 999999828988225822169
No 7
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=52.77 E-value=5.1 Score=21.01 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999633430432542101
Q gi|254780988|r 22 NLLEEYIMKEKSIEHDRLRLE 42 (151)
Q Consensus 22 ~~~~ey~~k~~sie~d~l~le 42 (151)
.++.+-+..++|.|.|..|++
T Consensus 121 ~~i~~i~~~~~~~Evdp~k~~ 141 (344)
T smart00323 121 PVLKKIVESKKSCEVDPAKLE 141 (344)
T ss_pred HHHHHHHCCCCCCCCCCCCCC
T ss_conf 668998668845343833366
No 8
>pfam03620 IBV_3C IBV 3C protein. Product of ORF 3C from Avian infectious bronchitis virus (IBV). Currently, the function of this protein remains unknown.
Probab=51.59 E-value=6.5 Score=20.37 Aligned_cols=28 Identities=39% Similarity=0.726 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53334788999999887657898764089
Q gi|254780988|r 123 LLAPFTQDIIACILGFWFTDTIVQRRKGV 151 (151)
Q Consensus 123 ll~pftq~iiacilgfw~td~ivq~~kgv 151 (151)
-|..|.|.+-||.| ||||=-.+..-||+
T Consensus 34 aLqaFvQAaDac~L-fwytw~v~pgakgt 61 (93)
T pfam03620 34 ALQAFVQAADACLL-FWYTWVALPGAKGT 61 (93)
T ss_pred HHHHHHHHHHHHHH-HHHHHEECCCCCEE
T ss_conf 99999999989999-87441445576446
No 9
>KOG4112 consensus
Probab=40.59 E-value=15 Score=18.28 Aligned_cols=10 Identities=40% Similarity=0.683 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999887
Q gi|254780988|r 130 DIIACILGFW 139 (151)
Q Consensus 130 ~iiacilgfw 139 (151)
.|++||+|||
T Consensus 36 aiVg~i~Gf~ 45 (101)
T KOG4112 36 AIVGFIYGFA 45 (101)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 10
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=37.78 E-value=36 Score=16.07 Aligned_cols=16 Identities=19% Similarity=0.677 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999877
Q gi|254780988|r 95 TTLFWIILYPLLIWWG 110 (151)
Q Consensus 95 tt~fwii~yplliww~ 110 (151)
-..-||.+||++-+||
T Consensus 187 VDvVWI~lF~lvYL~G 202 (204)
T PRK10663 187 LDVVWICVFTVVYLMG 202 (204)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999851
No 11
>PRK05907 hypothetical protein; Provisional
Probab=34.55 E-value=41 Score=15.77 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHH------HHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 489999999831--27999999------96334304325421012003441
Q gi|254780988|r 7 GSIARFFIKFVP--SLFNLLEE------YIMKEKSIEHDRLRLEIAKIQST 49 (151)
Q Consensus 7 g~~~rf~~~fvp--s~f~~~~e------y~~k~~sie~d~l~le~ak~~st 49 (151)
-|+|..|++-+| +.+++++| |+-|++||||....-=.+|..+.
T Consensus 156 l~~Aslfvkkfpqt~~~~ll~Ef~KLlC~vG~k~sle~sDIqsfv~kke~~ 206 (311)
T PRK05907 156 LGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKQSLEASDIQSFVVKKEQA 206 (311)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHH
T ss_conf 789999999766664778999999999884685400188799999556212
No 12
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=46 Score=15.45 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 878889978999999999999998774304
Q gi|254780988|r 85 IFFNALIRPFTTLFWIILYPLLIWWGVEKG 114 (151)
Q Consensus 85 ~~f~alirp~tt~fwii~yplliww~v~~g 114 (151)
-.|.+++--+-. |--++-|+.+||.-|+.
T Consensus 23 ~hls~llglllp-fg~llGPlivW~~kK~~ 51 (143)
T COG3296 23 AHLSALLGLLLP-FGSLLGPLIVWLLKKDS 51 (143)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 999999999999-99898799999998116
No 13
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=29.78 E-value=25 Score=16.96 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 744553334788999999887657898
Q gi|254780988|r 119 DPLTLLAPFTQDIIACILGFWFTDTIV 145 (151)
Q Consensus 119 dpltll~pftq~iiacilgfw~td~iv 145 (151)
+--.-|.|+-+.|+|||+||.--+|..
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~ 83 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGI 83 (546)
T ss_pred CCCCCCCCHHHHHHHHHHHEEECCCCE
T ss_conf 986343518999999876035057870
No 14
>pfam11712 Vma12 Endoplasmic reticulum-based factor for assembly of V-ATPase. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterized member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localized to the endoplasmic reticulum.
Probab=29.41 E-value=50 Score=15.26 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8878889978999999999999998
Q gi|254780988|r 84 MIFFNALIRPFTTLFWIILYPLLIW 108 (151)
Q Consensus 84 ~~~f~alirp~tt~fwii~yplliw 108 (151)
...||-++--++++|-+-..+...|
T Consensus 76 ~~v~Ni~vSV~~~~~~~~~~~~~~~ 100 (137)
T pfam11712 76 STVLNILVSVVSTFFAGWYWARYSF 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999813
No 15
>KOG1773 consensus
Probab=27.99 E-value=33 Score=16.30 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998774304326474455333478899999988
Q gi|254780988|r 95 TTLFWIILYPLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 95 tt~fwii~yplliww~v~~g~~~~dpltll~pftq~iiacilgf 138 (151)
--+.|+++-|+-||+ ++|..|+|-+ -.|+-|+|||
T Consensus 10 ~iilai~lPP~aV~l--~~g~C~~~~~-------InilL~~L~~ 44 (63)
T KOG1773 10 LIILAIFLPPLAVFL--RRGGCTVDVL-------INILLTLLGF 44 (63)
T ss_pred HHHHHHHCCCHHEEE--ECCCCCHHHH-------HHHHHHHHHH
T ss_conf 999999847551013--5588751517-------9999999998
No 16
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase; InterPro: IPR006334 These sequences represent glutamate--cysteine ligase, also known as gamma-glutamylcysteine synthetase, an enzyme in the biosynthesis of glutathione (GSH). GSH is one of several low molecular weight cysteine derivatives that can serve to protect against oxidative damage and participate in biosynthetic or detoxification reactions.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=26.64 E-value=47 Score=15.41 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 786003444421117777521238887888997899999999999
Q gi|254780988|r 60 ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYP 104 (151)
Q Consensus 60 ~~pvrlar~~~qaned~~~~~~k~~~~f~alirp~tt~fwii~yp 104 (151)
--|.++=....|+.+.+....-+---|+-+|||-+--|=|||.|=
T Consensus 151 SLP~~fW~~~~~~~~~~ls~~d~iSagY~~LIRNyyRfgW~~pYL 195 (518)
T TIGR01434 151 SLPLAFWTALRQAEESELSEKDLISAGYLALIRNYYRFGWVVPYL 195 (518)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 116889988721357755430256499999877654576577555
No 17
>TIGR00681 kdpC K+-transporting ATPase, C subunit; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex . It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA . The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane.
Probab=26.37 E-value=49 Score=15.32 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=8.8
Q ss_pred HHHHHHH---HHHHHH
Q ss_conf 9999999---999999
Q gi|254780988|r 95 TTLFWII---LYPLLI 107 (151)
Q Consensus 95 tt~fwii---~yplli 107 (151)
+-+|||| +||+++
T Consensus 10 ~~~l~~iTg~vYPl~v 25 (193)
T TIGR00681 10 LLLLLVITGLVYPLLV 25 (193)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999988988998
No 18
>pfam08939 DUF1917 Domain of unknown function (DUF1917). This domain is found in various hypothetical and basophilic leukaemia proteins. It has no known function.
Probab=25.19 E-value=18 Score=17.78 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 983127999999963343043254210120034412300997215786003444421117777521238887888
Q gi|254780988|r 15 KFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQFERESKAMIFFNA 89 (151)
Q Consensus 15 ~fvps~f~~~~ey~~k~~sie~d~l~le~ak~~sttq~dl~~~~~~~pvrlar~~~qaned~~~~~~k~~~~f~a 89 (151)
+|+.-|-.++.++..+.+.|+.+. -+|+...+..++..+...--..|-.-|.+.++-+| |||+|-..
T Consensus 88 ~~~~~G~e~l~~~~~~~~~~~~~~-------~~~~~~a~~r~~~~~R~~l~~~i~~LA~~~~v~sG-KWmlf~~~ 154 (237)
T pfam08939 88 RFVREGEELLPSFTDQAAWIEAEN-------PGSSQAALERLLTPERKELEQDIFRLARETGVVSG-KWLLFLPP 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEECCH
T ss_conf 999978999999999999998503-------78972666413049999999999999998495346-25665788
No 19
>pfam07169 consensus
Probab=24.44 E-value=62 Score=14.72 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH-HHCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998774-3043----------------26474455333478899999988765
Q gi|254780988|r 97 LFWIILYPLLIWWGV-EKGY----------------LTKDPLTLLAPFTQDIIACILGFWFT 141 (151)
Q Consensus 97 ~fwii~yplliww~v-~~g~----------------~~~dpltll~pftq~iiacilgfw~t 141 (151)
.-|+.|..|.|-||. ---| +.+|||-|..--..+----|.||.-.
T Consensus 47 ~awllv~aliitwsavaivmfdlvdyknfsaSSi~KigSdPLkivhdavEETTDWiYGFfSL 108 (265)
T pfam07169 47 AAWLLVIALIITWSAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVHDAVEETTDWIYGFFSL 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHEEEHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999877666410101101122223576605880788988877411479999999
No 20
>pfam10755 DUF2585 Protein of unknown function (DUF2585). This family is conserved in Proteobacteria. The function is not known.
Probab=21.44 E-value=67 Score=14.51 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999999999987743043264744553334
Q gi|254780988|r 94 FTTLFWIILYPLLIWWGVEKGYLTKDPLTLLAPF 127 (151)
Q Consensus 94 ~tt~fwii~yplliww~v~~g~~~~dpltll~pf 127 (151)
--|.+-.|...++.-|-+..+ ++-.-|-|+.|.
T Consensus 124 ~vtv~lai~fE~~~~~~IRDn-LtLNvlMLv~Pv 156 (165)
T pfam10755 124 WVTVALAIGFEILTLWVIRDN-LTLNVLMLVWPV 156 (165)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHCCH
T ss_conf 999999999999999973165-012346653629
No 21
>pfam11351 DUF3154 Protein of unknown function (DUF3154). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.45 E-value=74 Score=14.25 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHH
Q ss_conf 12003441230099721578600344442111777-75212388878889978999------9999-9999999877430
Q gi|254780988|r 42 EIAKIQSTTQVDLKALESETPVRLARLQNQANEDQ-FERESKAMIFFNALIRPFTT------LFWI-ILYPLLIWWGVEK 113 (151)
Q Consensus 42 e~ak~~sttq~dl~~~~~~~pvrlar~~~qaned~-~~~~~k~~~~f~alirp~tt------~fwi-i~yplliww~v~~ 113 (151)
+++-....-+-..+|......-+++|+++-.|.-. -.++ -||.-. |-|- ++.|+..|+...-
T Consensus 21 ~~~l~~~al~q~~~Ef~~~~~~~~d~~~dglNrlp~~~s~----------~RP~~~~~~~~l~~~a~m~dP~~f~~~~~~ 90 (123)
T pfam11351 21 EAELQKAALEQFAAEFAAARRGRFDRLQDGLNRLPAWTSG----------WRPALALVTYGLFAYAFMMDPLWFAARMVG 90 (123)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC----------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999999999986435556199999865269964334----------470899999999999997088999888866
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 432-64744553334788999999887657898764089
Q gi|254780988|r 114 GYL-TKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151 (151)
Q Consensus 114 g~~-~~dpltll~pftq~iiacilgfw~td~ivq~~kgv 151 (151)
.-+ --+||..| ...|..|+|+-.-..|.+|+
T Consensus 91 ~al~VPepLwwL-------lg~~v~fYfgaR~~~K~q~~ 122 (123)
T pfam11351 91 LALAVPEPLWWL-------LGAGVLGYFGARHQEKGQGF 122 (123)
T ss_pred HHHCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCC
T ss_conf 750585889999-------99989855567877543057
Done!