Query gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 151
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 33803
Date Wed Jun 1 19:56:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780988.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1v54_C Cytochrome C oxidase p 36.1 24 0.00072 16.7 2.3 45 66-110 147-191 (192)
2 >1m56_C Cytochrome C oxidase; 31.6 34 0.001 15.8 2.4 27 84-110 169-195 (196)
3 >3bz1_T PSII-T, PSII-TC, photo 22.8 43 0.0013 15.3 1.6 13 130-142 8-20 (32)
4 >3e6c_C CPRK, cyclic nucleotid 20.5 48 0.0014 15.0 1.5 33 106-138 10-42 (103)
5 >1zvz_B Talin 1, metavinculin; 17.8 43 0.0013 15.2 0.8 17 62-78 3-19 (26)
6 >1ft9_A Carbon monoxide oxidat 16.6 48 0.0014 15.0 0.8 30 109-138 14-43 (90)
7 >3iwz_A CAP-like, catabolite a 15.9 48 0.0014 15.0 0.6 20 119-138 22-41 (72)
8 >3b9w_A Ammonium transporter f 10.9 1.2E+02 0.0034 12.8 5.1 44 94-137 71-123 (242)
9 >3d0s_A Transcriptional regula 10.5 1.2E+02 0.0036 12.7 1.4 30 109-138 13-42 (80)
10 >1xkm_A Distinctin chain A; po 10.1 1.2E+02 0.0037 12.6 1.4 9 86-94 8-16 (26)
No 1
>>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (C:70-261)
Probab=36.13 E-value=24 Score=16.70 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 444421117777521238887888997899999999999999877
Q gi|254780988|r 66 ARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG 110 (151)
Q Consensus 66 ar~~~qaned~~~~~~k~~~~f~alirp~tt~fwii~yplliww~ 110 (151)
+..-.+.-..+..++.....-..++---|...-|+.+|+++-+||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~YWHFvd~vWi~lf~~~Yl~g 191 (192)
T 1v54_C 147 IVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 191 (192)
T ss_dssp HHHHHHHHTTCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999980689844006899999997578876898888888428
No 2
>>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266)
Probab=31.57 E-value=34 Score=15.83 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887888997899999999999999877
Q gi|254780988|r 84 MIFFNALIRPFTTLFWIILYPLLIWWG 110 (151)
Q Consensus 84 ~~~f~alirp~tt~fwii~yplliww~ 110 (151)
..-..++---|...-||.+|+++-+||
T Consensus 169 ~~~~~~~YWHFVD~vWi~lf~~~Ylwg 195 (196)
T 1m56_C 169 GFEAAIWYWHFVDVVWLFLFASIYIWG 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999889988998888886227
No 3
>>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3a0b_T* 3a0h_T* (T:)
Probab=22.76 E-value=43 Score=15.27 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999887657
Q gi|254780988|r 130 DIIACILGFWFTD 142 (151)
Q Consensus 130 ~iiacilgfw~td 142 (151)
-|.|||.|..|-.
T Consensus 8 ~i~acii~lfffa 20 (32)
T 3bz1_T 8 FIFACIIALFFFA 20 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 4
>>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250)
Probab=20.50 E-value=48 Score=14.95 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998774304326474455333478899999988
Q gi|254780988|r 106 LIWWGVEKGYLTKDPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 106 liww~v~~g~~~~dpltll~pftq~iiacilgf 138 (151)
|++..-+-|..+.+.-.+--|+||+-||+.+|-
T Consensus 10 Ll~l~~~~g~~~~~~~~i~~~lt~~~LA~~lG~ 42 (103)
T 3e6c_C 10 FYELCSSQGKRVGDTYEITMPLSQKSIGEITGV 42 (103)
T ss_dssp HHHHHHHHCEEETTEEEEECCCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 987999818765655356788689999989799
No 5
>>1zvz_B Talin 1, metavinculin; complex, protein binding; 1.80A {Gallus gallus} (B:)
Probab=17.83 E-value=43 Score=15.23 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=13.5
Q ss_pred CEEHHHHHHHHHHHHHH
Q ss_conf 60034444211177775
Q gi|254780988|r 62 PVRLARLQNQANEDQFE 78 (151)
Q Consensus 62 pvrlar~~~qaned~~~ 78 (151)
-+|-|||-+||..|-+.
T Consensus 3 mvrqarilaqatsdlvn 19 (26)
T 1zvz_B 3 MVRQARILAQATSDLVN 19 (26)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999998899999
No 6
>>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} (A:133-222)
Probab=16.62 E-value=48 Score=14.99 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=19.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 774304326474455333478899999988
Q gi|254780988|r 109 WGVEKGYLTKDPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 109 w~v~~g~~~~dpltll~pftq~iiacilgf 138 (151)
-+-.-|.-+.++..+--|+||+-||.++|-
T Consensus 14 l~~~~g~~~~~~~~i~~~lt~~~lA~~lg~ 43 (90)
T 1ft9_A 14 HANTTGRQTQGGVIVSVDFTVEEIANLIGS 43 (90)
T ss_dssp TCBCCCSCC--CCCCEECCCHHHHHHHHCS
T ss_pred HHHHHCCCCCCCEEEECHHHHHHHHHHHCC
T ss_conf 999838665684278542889999998499
No 7
>>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} (A:159-230)
Probab=15.87 E-value=48 Score=14.95 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 74455333478899999988
Q gi|254780988|r 119 DPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 119 dpltll~pftq~iiacilgf 138 (151)
++-..--|+||+-||+++|-
T Consensus 22 ~~~~~~~~~t~~~lA~~lG~ 41 (72)
T 3iwz_A 22 HPQGTQLRVSRQELARLVGC 41 (72)
T ss_dssp ETTEEEEECCHHHHHHHHTC
T ss_pred CCCCEEECCCHHHHHHHHCC
T ss_conf 88713517799999989798
No 8
>>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transport protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* (A:39-167,A:295-407)
Probab=10.92 E-value=1.2e+02 Score=12.76 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998774304326---------47445533347889999998
Q gi|254780988|r 94 FTTLFWIILYPLLIWWGVEKGYLT---------KDPLTLLAPFTQDIIACILG 137 (151)
Q Consensus 94 ~tt~fwii~yplliww~v~~g~~~---------~dpltll~pftq~iiacilg 137 (151)
+-+++.+++||+..||.-..|.+. +-+.-+.+.+.-=..+++||
T Consensus 71 i~al~~v~vY~~~~~~vw~~Gwl~~lG~~DfaGs~vVH~fGgyfGLava~vLg 123 (242)
T 3b9w_A 71 LLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHAFGAYFGLGVSIALT 123 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSCTTCCCTTCTTTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEE
T ss_conf 99999998755222131479852113641036745541643799999987335
No 9
>>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:148-227)
Probab=10.46 E-value=1.2e+02 Score=12.66 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 774304326474455333478899999988
Q gi|254780988|r 109 WGVEKGYLTKDPLTLLAPFTQDIIACILGF 138 (151)
Q Consensus 109 w~v~~g~~~~dpltll~pftq~iiacilgf 138 (151)
.+-.-|....+.-.+--|+||+-||.++|-
T Consensus 13 l~~~~~~~~~~~~~i~~~~t~~~la~~lg~ 42 (80)
T 3d0s_A 13 LAQRFGTQEGGALRVTHDLTQEEIAQLVGA 42 (80)
T ss_dssp HHHHHEEEETTEEEEECCCCHHHHHHHHTS
T ss_pred HHHHCCCCCCCCEEEEECCCHHHHHHHHCC
T ss_conf 787607877886135547899999999799
No 10
>>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} (A:)
Probab=10.12 E-value=1.2e+02 Score=12.59 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 788899789
Q gi|254780988|r 86 FFNALIRPF 94 (151)
Q Consensus 86 ~f~alirp~ 94 (151)
||+|||..+
T Consensus 8 gftaliktl 16 (26)
T 1xkm_A 8 GFTALIKTL 16 (26)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
T ss_conf 689999998
Done!