Query gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 151 No_of_seqs 2 out of 4 Neff 1.3 Searched_HMMs 13730 Date Wed Jun 1 10:57:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780988.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ft9a1 a.4.5.4 (A:134-213) CO 28.6 7.9 0.00057 17.3 0.8 35 104-138 8-42 (80) 2 d1v54c_ f.25.1.1 (C:) Mitochon 19.7 27 0.002 14.1 2.3 13 93-105 91-103 (259) 3 d2axtt1 f.23.34.1 (T:1-30) Pho 13.4 39 0.0029 13.2 1.6 12 130-141 8-19 (30) 4 d2gaua1 a.4.5.4 (A:152-232) Tr 11.6 45 0.0032 12.9 1.9 21 118-138 21-41 (81) 5 d1h2ca_ b.31.1.1 (A:) EV matri 9.0 31 0.0023 13.8 -0.1 16 60-75 76-91 (125) 6 d3e5ua1 a.4.5.4 (A:148-227) Ch 8.7 57 0.0041 12.3 1.7 30 108-137 12-41 (80) 7 d1hdmb2 d.19.1.1 (B:3-87) Clas 7.1 6.1 0.00044 17.9 -4.5 16 116-131 26-41 (85) 8 d1fx0a1 a.69.1.1 (A:373-501) F 6.0 78 0.0057 11.5 3.7 34 104-137 62-95 (129) 9 d1k8ib2 d.19.1.1 (B:1-94) Clas 5.9 9.6 0.0007 16.8 -4.0 18 116-133 27-44 (94) 10 d1fftc_ f.25.1.1 (C:) Cytochro 5.5 35 0.0026 13.5 -1.3 46 65-110 139-184 (185) No 1 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=28.63 E-value=7.9 Score=17.26 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=24.5 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99998774304326474455333478899999988 Q gi|254780988|r 104 PLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGF 138 (151) Q Consensus 104 plliww~v~~g~~~~dpltll~pftq~iiacilgf 138 (151) -+|+..+...|--..|...+--|+||+-||.++|- T Consensus 8 ~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~ 42 (80) T d1ft9a1 8 GFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGS 42 (80) T ss_dssp HHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCS T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCC T ss_conf 99999999859988997178537899999999798 No 2 >d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]} Probab=19.67 E-value=27 Score=14.15 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8999999999999 Q gi|254780988|r 93 PFTTLFWIILYPL 105 (151) Q Consensus 93 p~tt~fwii~ypl 105 (151) =|-.+||-..+.- T Consensus 91 ~F~~~F~ay~~~~ 103 (259) T d1v54c_ 91 FFTGFFWAFYHSS 103 (259) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999988877 No 3 >d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]} Probab=13.40 E-value=39 Score=13.22 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999988765 Q gi|254780988|r 130 DIIACILGFWFT 141 (151) Q Consensus 130 ~iiacilgfw~t 141 (151) -|.||+.|..|- T Consensus 8 ~ifac~i~lfff 19 (30) T d2axtt1 8 FIFACIIALFFF 19 (30) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 4 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=11.62 E-value=45 Score=12.90 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=9.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 474455333478899999988 Q gi|254780988|r 118 KDPLTLLAPFTQDIIACILGF 138 (151) Q Consensus 118 ~dpltll~pftq~iiacilgf 138 (151) .|+.++--|+||+-||..+|- T Consensus 21 ~~~~~i~~~lt~~eLA~~~G~ 41 (81) T d2gaua1 21 NDGATLSIYLSREELATLSNM 41 (81) T ss_dssp TTSSBBSCCCCHHHHHHHTTS T ss_pred CCCCEEEECCCHHHHHHHHCC T ss_conf 899778606899999999799 No 5 >d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]} Probab=9.00 E-value=31 Score=13.79 Aligned_cols=16 Identities=44% Similarity=0.619 Sum_probs=13.1 Q ss_pred CCCEEHHHHHHHHHHH Q ss_conf 7860034444211177 Q gi|254780988|r 60 ETPVRLARLQNQANED 75 (151) Q Consensus 60 ~~pvrlar~~~qaned 75 (151) +.|.|+-|+.|||--. T Consensus 76 ~hplr~lr~gnqaf~q 91 (125) T d1h2ca_ 76 DHPLRLLRIGNQAFLQ 91 (125) T ss_dssp TCSSHHHHTSEEEEEH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 5157999870599997 No 6 >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Probab=8.75 E-value=57 Score=12.27 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=14.9 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 877430432647445533347889999998 Q gi|254780988|r 108 WWGVEKGYLTKDPLTLLAPFTQDIIACILG 137 (151) Q Consensus 108 ww~v~~g~~~~dpltll~pftq~iiacilg 137 (151) ...-..|....+..++--|+||+-||-.+| T Consensus 12 ~L~~~~g~~~~~~~~i~~~lt~~elA~~~g 41 (80) T d3e5ua1 12 ELCSSQGKRVGDTYEITMPLSQKSIGEITG 41 (80) T ss_dssp HHHHHHCEEETTEEECCSCCCHHHHHHHHT T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHHHC T ss_conf 999985997899728863799999999988 No 7 >d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} Probab=7.06 E-value=6.1 Score=17.92 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=7.7 Q ss_pred CCCCCHHHHHHHHHHH Q ss_conf 2647445533347889 Q gi|254780988|r 116 LTKDPLTLLAPFTQDI 131 (151) Q Consensus 116 ~~~dpltll~pftq~i 131 (151) |||||||--.|-.+.+ T Consensus 26 FNKdlL~CwDP~~~~~ 41 (85) T d1hdmb2 26 FNKDLLTCWDPEENKM 41 (85) T ss_dssp ETTEEEEEEETTTTEE T ss_pred ECCCCCEEECCCCCEE T ss_conf 4687310136764705 No 8 >d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Probab=6.02 E-value=78 Score=11.49 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999877430432647445533347889999998 Q gi|254780988|r 104 PLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILG 137 (151) Q Consensus 104 plliww~v~~g~~~~dpltll~pftq~iiacilg 137 (151) -.++.|.+.+||+..=|+.-...|.++++.-+-. T Consensus 62 Qv~iLyA~~~G~LD~ipv~~I~~fe~~ll~~l~~ 95 (129) T d1fx0a1 62 QVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKT 95 (129) T ss_dssp HHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999975854547789899999999999988 No 9 >d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]} Probab=5.89 E-value=9.6 Score=16.76 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=7.6 Q ss_pred CCCCCHHHHHHHHHHHHH Q ss_conf 264744553334788999 Q gi|254780988|r 116 LTKDPLTLLAPFTQDIIA 133 (151) Q Consensus 116 ~~~dpltll~pftq~iia 133 (151) ||||||+--.|-.|.++. T Consensus 27 FNK~~L~CwDp~~~~~~p 44 (94) T d1k8ib2 27 FNKDLLACWDPDVGKIVP 44 (94) T ss_dssp ETTSCCEEEETTTTEEEE T ss_pred ECCCCEEEECCCCCEEEE T ss_conf 657734566677572776 No 10 >d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]} Probab=5.50 E-value=35 Score=13.48 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3444421117777521238887888997899999999999999877 Q gi|254780988|r 65 LARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG 110 (151) Q Consensus 65 lar~~~qaned~~~~~~k~~~~f~alirp~tt~fwii~yplliww~ 110 (151) |+..-.++-..+..+......-..++---|...-|+++||++-+|| T Consensus 139 L~~~~~r~~~~~~~~~~~~~v~~~~~YWHFvd~vWi~lf~~lYl~g 184 (185) T d1fftc_ 139 MAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMG 184 (185) T ss_dssp HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999980799954006899999999999999999999897049 Done!