Query         gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 151
No_of_seqs    2 out of 4
Neff          1.3 
Searched_HMMs 13730
Date          Wed Jun  1 10:57:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780988.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ft9a1 a.4.5.4 (A:134-213) CO  28.6     7.9 0.00057   17.3   0.8   35  104-138     8-42  (80)
  2 d1v54c_ f.25.1.1 (C:) Mitochon  19.7      27   0.002   14.1   2.3   13   93-105    91-103 (259)
  3 d2axtt1 f.23.34.1 (T:1-30) Pho  13.4      39  0.0029   13.2   1.6   12  130-141     8-19  (30)
  4 d2gaua1 a.4.5.4 (A:152-232) Tr  11.6      45  0.0032   12.9   1.9   21  118-138    21-41  (81)
  5 d1h2ca_ b.31.1.1 (A:) EV matri   9.0      31  0.0023   13.8  -0.1   16   60-75     76-91  (125)
  6 d3e5ua1 a.4.5.4 (A:148-227) Ch   8.7      57  0.0041   12.3   1.7   30  108-137    12-41  (80)
  7 d1hdmb2 d.19.1.1 (B:3-87) Clas   7.1     6.1 0.00044   17.9  -4.5   16  116-131    26-41  (85)
  8 d1fx0a1 a.69.1.1 (A:373-501) F   6.0      78  0.0057   11.5   3.7   34  104-137    62-95  (129)
  9 d1k8ib2 d.19.1.1 (B:1-94) Clas   5.9     9.6  0.0007   16.8  -4.0   18  116-133    27-44  (94)
 10 d1fftc_ f.25.1.1 (C:) Cytochro   5.5      35  0.0026   13.5  -1.3   46   65-110   139-184 (185)

No 1  
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=28.63  E-value=7.9  Score=17.26  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99998774304326474455333478899999988
Q gi|254780988|r  104 PLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILGF  138 (151)
Q Consensus       104 plliww~v~~g~~~~dpltll~pftq~iiacilgf  138 (151)
                      -+|+..+...|--..|...+--|+||+-||.++|-
T Consensus         8 ~~Ll~l~~~~g~~~~~~~~i~~~~t~~eiA~~lG~   42 (80)
T d1ft9a1           8 GFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGS   42 (80)
T ss_dssp             HHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCS
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCC
T ss_conf             99999999859988997178537899999999798


No 2  
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.67  E-value=27  Score=14.15  Aligned_cols=13  Identities=31%  Similarity=0.618  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8999999999999
Q gi|254780988|r   93 PFTTLFWIILYPL  105 (151)
Q Consensus        93 p~tt~fwii~ypl  105 (151)
                      =|-.+||-..+.-
T Consensus        91 ~F~~~F~ay~~~~  103 (259)
T d1v54c_          91 FFTGFFWAFYHSS  103 (259)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999988877


No 3  
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.40  E-value=39  Score=13.22  Aligned_cols=12  Identities=42%  Similarity=0.891  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999988765
Q gi|254780988|r  130 DIIACILGFWFT  141 (151)
Q Consensus       130 ~iiacilgfw~t  141 (151)
                      -|.||+.|..|-
T Consensus         8 ~ifac~i~lfff   19 (30)
T d2axtt1           8 FIFACIIALFFF   19 (30)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 4  
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.62  E-value=45  Score=12.90  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=9.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             474455333478899999988
Q gi|254780988|r  118 KDPLTLLAPFTQDIIACILGF  138 (151)
Q Consensus       118 ~dpltll~pftq~iiacilgf  138 (151)
                      .|+.++--|+||+-||..+|-
T Consensus        21 ~~~~~i~~~lt~~eLA~~~G~   41 (81)
T d2gaua1          21 NDGATLSIYLSREELATLSNM   41 (81)
T ss_dssp             TTSSBBSCCCCHHHHHHHTTS
T ss_pred             CCCCEEEECCCHHHHHHHHCC
T ss_conf             899778606899999999799


No 5  
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=9.00  E-value=31  Score=13.79  Aligned_cols=16  Identities=44%  Similarity=0.619  Sum_probs=13.1

Q ss_pred             CCCEEHHHHHHHHHHH
Q ss_conf             7860034444211177
Q gi|254780988|r   60 ETPVRLARLQNQANED   75 (151)
Q Consensus        60 ~~pvrlar~~~qaned   75 (151)
                      +.|.|+-|+.|||--.
T Consensus        76 ~hplr~lr~gnqaf~q   91 (125)
T d1h2ca_          76 DHPLRLLRIGNQAFLQ   91 (125)
T ss_dssp             TCSSHHHHTSEEEEEH
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             5157999870599997


No 6  
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=8.75  E-value=57  Score=12.27  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=14.9

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             877430432647445533347889999998
Q gi|254780988|r  108 WWGVEKGYLTKDPLTLLAPFTQDIIACILG  137 (151)
Q Consensus       108 ww~v~~g~~~~dpltll~pftq~iiacilg  137 (151)
                      ...-..|....+..++--|+||+-||-.+|
T Consensus        12 ~L~~~~g~~~~~~~~i~~~lt~~elA~~~g   41 (80)
T d3e5ua1          12 ELCSSQGKRVGDTYEITMPLSQKSIGEITG   41 (80)
T ss_dssp             HHHHHHCEEETTEEECCSCCCHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCEEEEECCCHHHHHHHHC
T ss_conf             999985997899728863799999999988


No 7  
>d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=7.06  E-value=6.1  Score=17.92  Aligned_cols=16  Identities=31%  Similarity=0.405  Sum_probs=7.7

Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             2647445533347889
Q gi|254780988|r  116 LTKDPLTLLAPFTQDI  131 (151)
Q Consensus       116 ~~~dpltll~pftq~i  131 (151)
                      |||||||--.|-.+.+
T Consensus        26 FNKdlL~CwDP~~~~~   41 (85)
T d1hdmb2          26 FNKDLLTCWDPEENKM   41 (85)
T ss_dssp             ETTEEEEEEETTTTEE
T ss_pred             ECCCCCEEECCCCCEE
T ss_conf             4687310136764705


No 8  
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=6.02  E-value=78  Score=11.49  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999877430432647445533347889999998
Q gi|254780988|r  104 PLLIWWGVEKGYLTKDPLTLLAPFTQDIIACILG  137 (151)
Q Consensus       104 plliww~v~~g~~~~dpltll~pftq~iiacilg  137 (151)
                      -.++.|.+.+||+..=|+.-...|.++++.-+-.
T Consensus        62 Qv~iLyA~~~G~LD~ipv~~I~~fe~~ll~~l~~   95 (129)
T d1fx0a1          62 QVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKT   95 (129)
T ss_dssp             HHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999975854547789899999999999988


No 9  
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=5.89  E-value=9.6  Score=16.76  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=7.6

Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             264744553334788999
Q gi|254780988|r  116 LTKDPLTLLAPFTQDIIA  133 (151)
Q Consensus       116 ~~~dpltll~pftq~iia  133 (151)
                      ||||||+--.|-.|.++.
T Consensus        27 FNK~~L~CwDp~~~~~~p   44 (94)
T d1k8ib2          27 FNKDLLACWDPDVGKIVP   44 (94)
T ss_dssp             ETTSCCEEEETTTTEEEE
T ss_pred             ECCCCEEEECCCCCEEEE
T ss_conf             657734566677572776


No 10 
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=5.50  E-value=35  Score=13.48  Aligned_cols=46  Identities=20%  Similarity=0.389  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3444421117777521238887888997899999999999999877
Q gi|254780988|r   65 LARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG  110 (151)
Q Consensus        65 lar~~~qaned~~~~~~k~~~~f~alirp~tt~fwii~yplliww~  110 (151)
                      |+..-.++-..+..+......-..++---|...-|+++||++-+||
T Consensus       139 L~~~~~r~~~~~~~~~~~~~v~~~~~YWHFvd~vWi~lf~~lYl~g  184 (185)
T d1fftc_         139 MAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMG  184 (185)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999980799954006899999999999999999999897049


Done!