BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
(151 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040665|gb|ACT57461.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 151
Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE
Sbjct: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
Query: 61 TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP
Sbjct: 61 TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
Query: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151
LTLLAPFTQDIIACILGFWFTDTIVQRRKGV
Sbjct: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151
>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040876|gb|ACT57672.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120664|gb|ADV02487.1| hypothetical protein SC1_gp005 [Liberibacter phage SC1]
gi|317120808|gb|ADV02629.1| hypothetical protein SC1_gp005 [Candidatus Liberibacter asiaticus]
Length = 157
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 15/158 (9%)
Query: 3 SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE 58
SFL G + RF ++F+PS F +++ EY+ K++SIE+D+L+LE+AK S+TQ+DL ++
Sbjct: 4 SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
Query: 59 S-------ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
+ + P+RLAR++ Q + + K + F ALIRP TT FWII+YPLL+WW V
Sbjct: 64 AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119
Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
++G DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
>gi|317120705|gb|ADV02527.1| hypothetical protein SC2_gp005 [Liberibacter phage SC2]
gi|317120766|gb|ADV02587.1| hypothetical protein SC2_gp005 [Candidatus Liberibacter asiaticus]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 119/159 (74%), Gaps = 15/159 (9%)
Query: 3 SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKA-- 56
SFL G + RF ++F+PS F +++ EY+ K++S+E++++++E+AKI ++TQV+L+
Sbjct: 4 SFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSLEYNKMQIELAKINTSTQVNLEEIK 63
Query: 57 -----LESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
L+++ P+RLAR+++Q + + K + FNALIRP TTLFWI++YPLL+WW V
Sbjct: 64 YGIEELKADKPIRLARVKSQ----NVKIDIKWINGFNALIRPLTTLFWIVVYPLLVWWSV 119
Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
++ + DPLTLL+PFTQ+IIACILGFW+TD IVQ+R G
Sbjct: 120 KERMFSIDPLTLLSPFTQEIIACILGFWYTDKIVQKRWG 158
>gi|315121924|ref|YP_004062413.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495326|gb|ADR51925.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 112/159 (70%), Gaps = 15/159 (9%)
Query: 3 SFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL---- 54
SFL G I RF ++FVPS+F + EY+M+++SIE+D+++LE KI S+TQ+DL
Sbjct: 4 SFLAGGIFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTKINSSTQLDLAEIK 63
Query: 55 ---KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
+ L+ + P+RLAR++ Q + + K + NALIRP TTLFWII+YPLL+WW V
Sbjct: 64 YGIEELKVDKPIRLARIKAQ----KVKSGIKWIDGVNALIRPLTTLFWIIVYPLLVWWSV 119
Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
++GY K PL +L F Q+IIACILGFW+TD IVQ+R+G
Sbjct: 120 KEGYFDKSPLAVLTLFEQEIIACILGFWYTDKIVQKRRG 158
>gi|315122886|ref|YP_004063375.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496288|gb|ADR52887.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 113/159 (71%), Gaps = 15/159 (9%)
Query: 3 SFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL---- 54
SFL G + RF ++FVPS+F + EY+M+++SIE+D+++LE +I S+TQ+DL
Sbjct: 4 SFLAGGLFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTRINSSTQLDLADIK 63
Query: 55 ---KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
+ L+ + P+RLAR++ Q + + K + N LIRP TTLFWII+YPLL+WW V
Sbjct: 64 YAIEELKVDQPIRLARIKAQ----KVKSGVKWIDGLNTLIRPLTTLFWIIVYPLLVWWSV 119
Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
++G + PL++L+PF Q+IIACILGFW+TD IVQ+++G
Sbjct: 120 KEGIFDRSPLSILSPFEQEIIACILGFWYTDKIVQKKRG 158
>gi|317120748|gb|ADV02570.1| hypothetical protein SC2_gp250 [Liberibacter phage SC2]
gi|317120762|gb|ADV02583.1| hypothetical protein SC2_gp250 [Candidatus Liberibacter asiaticus]
Length = 157
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 15/158 (9%)
Query: 3 SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL---- 54
SFL G + RF ++F+PS F +++ EY+ K++SIE+D+ +LE AKI S+ Q+DL
Sbjct: 4 SFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSIEYDKWKLETAKIDSSLQLDLADIK 63
Query: 55 ---KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
+ L+++ P++LAR++ Q + K + FN L+RP TTLFWII+YP+++WW V
Sbjct: 64 YGIEELKADKPIKLARIKAQ----NIKSGVKWIDSFNTLVRPLTTLFWIIVYPMMVWWSV 119
Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
++G K PL++L+PF Q+IIACILGFWFTD IVQ+R+
Sbjct: 120 KEGIFDKSPLSILSPFEQEIIACILGFWFTDKIVQKRR 157
>gi|315122566|ref|YP_004063055.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495968|gb|ADR52567.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 130
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 93/131 (70%), Gaps = 10/131 (7%)
Query: 29 MKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLARLQNQANEDQFERES 81
M+++SIE+++++LE +IQS+TQ+DL + L+ + P+RLAR++ Q + +
Sbjct: 1 MQKRSIEYEKMKLEQTRIQSSTQLDLADIKLGIEELKVDQPIRLARIKAQQVKSGIQWID 60
Query: 82 KAMIFFNALIRPFTTLFWIILYPLLIWW--GVEKGYLTKDPLTLLAPFTQDIIACILGFW 139
NALIRP TTLFWII +PLL+WW GV++G + PL++L+PF QDIIACILGFW
Sbjct: 61 AFNALINALIRPLTTLFWII-FPLLVWWSMGVKEGIFDRSPLSILSPFEQDIIACILGFW 119
Query: 140 FTDTIVQRRKG 150
+TD IVQ+++
Sbjct: 120 YTDKIVQKKRS 130
>gi|315122344|ref|YP_004062833.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495746|gb|ADR52345.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 125
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 93/131 (70%), Gaps = 15/131 (11%)
Query: 29 MKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLARLQNQANEDQFERES 81
M+++SIE+D+ +LE+A+ +TQ+DL + L+ + P+RLAR++ Q +F+
Sbjct: 1 MQKQSIEYDKTKLELAR--GSTQLDLADIKYAIEELKVDQPIRLARIKAQ----KFKSGI 54
Query: 82 KAMIFFNALIRPFTTLFWIILYPLLIWW--GVEKGYLTKDPLTLLAPFTQDIIACILGFW 139
K + FNALIRP TT FWII+YPLL+W V++G + PL++L+PF QDIIACILGFW
Sbjct: 55 KWIDGFNALIRPLTTFFWIIIYPLLVWGIVCVKEGVFDRSPLSILSPFEQDIIACILGFW 114
Query: 140 FTDTIVQRRKG 150
+TD IVQ+++
Sbjct: 115 YTDKIVQKKRS 125
>gi|315122770|ref|YP_004063259.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496172|gb|ADR52771.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 124
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 85/125 (68%), Gaps = 15/125 (12%)
Query: 3 SFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL---- 54
SFL G + RF ++F+PS+F + EY+M+++SIE+D+++LE+A+I S+TQ+DL
Sbjct: 4 SFLVGEVFRFALRFIPSVFEKIADGVLEYLMQKQSIEYDKMKLELARINSSTQLDLADIK 63
Query: 55 ---KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
+ L+++ +RLAR++ Q + + FNA +RP T+LFWII+YPLL+WW V
Sbjct: 64 LEIEELKADQLIRLARIKAQKVKSGIQWIDG----FNAFVRPLTSLFWIIVYPLLVWWSV 119
Query: 112 EKGYL 116
+ G+L
Sbjct: 120 KGGHL 124
>gi|315122303|ref|YP_004062792.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495705|gb|ADR52304.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 115
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 18 PSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLA 66
PS+F + EY+M+++SIE+D++ LE+ +I S+TQ+DL + L+ + +RLA
Sbjct: 14 PSVFEKIADGVLEYLMQKQSIEYDKMNLELPRINSSTQLDLADIKYAIEELKVDQSIRLA 73
Query: 67 RLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILY 103
R++ Q ++ K + FNALIRP TT FWII++
Sbjct: 74 RIKAQKVKNG--SGVKWIDGFNALIRPLTTFFWIIIF 108
>gi|315122323|ref|YP_004062812.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495725|gb|ADR52324.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 40
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 111 VEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
++ G + PL++L+PF QDIIACILGFW TD IVQ+++G
Sbjct: 1 MKGGIFDRSPLSILSPFEQDIIACILGFWCTDKIVQKKRG 40
>gi|315121790|ref|YP_004062279.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495192|gb|ADR51791.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 121
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 11/82 (13%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
M SFL + R ++F+PS+F + EY+M+++SIE+D+ +LE+A+I +TQ+DL
Sbjct: 2 MESFLASGLFRLALRFIPSVFEKIADGVLEYLMQKQSIEYDKTKLELARINGSTQLDLAD 61
Query: 55 -----KALESETPVRLARLQNQ 71
+ L+ + +RLAR++ Q
Sbjct: 62 IKYAIEELKVDQSIRLARIKAQ 83
>gi|315122634|ref|YP_004063123.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496036|gb|ADR52635.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 228
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 14 IKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLA 66
I+ P F + E++M+++ IE+D+ +LE +IQSTTQ+DL + L+ + P+RLA
Sbjct: 123 IEMPPPKF--ISEHLMQKRFIEYDKTKLEQTRIQSTTQLDLADIKLGIEELKVDQPIRLA 180
Query: 67 RLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYL 116
R++ Q + K + FN+LIRP TT F E+G+L
Sbjct: 181 RIKAQKVKSS--SGVKWIDGFNSLIRPLTTFFLDYYLSATRLVECERGHL 228
>gi|315122322|ref|YP_004062811.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495724|gb|ADR52323.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 55
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 52 VDLKALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILY 103
+ ++ L+ + P+RLAR++ Q + + K + FNALIRP TT FWII++
Sbjct: 1 MGIEELKVDQPIRLARIKAQ----KVKSGVKWIDGFNALIRPLTTFFWIIVF 48
>gi|315122321|ref|YP_004062810.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495723|gb|ADR52322.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 45
Score = 40.8 bits (94), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 14 IKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTT 50
++F PS+F+ + EY+M+++SIE+D+++ E +IQS T
Sbjct: 9 LRFFPSVFDGVLEYLMQKQSIEYDKMKPEQTRIQSAT 45
>gi|315122366|ref|YP_004062855.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495768|gb|ADR52367.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 52
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 107 IWWGVEKGYLTKDPL-TLLAP---FTQDIIACILGFWFTDTIVQRRK 149
IW G+E + + TLL + QDII+ +LGFWF+D +V++
Sbjct: 6 IWQGIESELFDQKTIATLLVTILEYGQDIISSVLGFWFSDGVVKKEN 52
>gi|331650027|ref|ZP_08351100.1| terminase small subunit (Gp1) [Escherichia coli M605]
gi|331040972|gb|EGI13129.1| terminase small subunit (Gp1) [Escherichia coli M605]
Length = 182
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 23 LLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLK--ALESETPVRLARLQNQANEDQFERE 80
++E Y +EK IE+++LR E+A +++ T+ DL+ ++ E RL + Q A E + R+
Sbjct: 46 VIEWYAQREKDIENEKLRKEVADLRAATESDLQPGTIDYER-YRLTKAQADAQELKNARD 104
Query: 81 SKAMI 85
S +I
Sbjct: 105 SALVI 109
>gi|169333797|ref|ZP_02860990.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis
DSM 17244]
gi|169259362|gb|EDS73328.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis
DSM 17244]
Length = 710
Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MISFLTGSIARFFIK---FVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKAL 57
+I++L ++FI V SL L Y + +KS+EH ++ ++ T+ D+K +
Sbjct: 3 LINYLYNKFNKWFIYSTILVISLLILFSGYFLYKKSVEHAVYNTTVSFMEQITEHDIKNM 62
Query: 58 ESETPVRLARLQNQANEDQFERE 80
E++ + +Q+ A+ + R+
Sbjct: 63 ENQMSAKYEYIQSLASRIRNTRK 85
Searching..................................................done
Results from round 2
>gi|315122886|ref|YP_004063375.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496288|gb|ADR52887.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 75/161 (46%), Positives = 114/161 (70%), Gaps = 15/161 (9%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
+ SFL G + RF ++FVPS+F + EY+M+++SIE+D+++LE +I S+TQ+DL
Sbjct: 2 IQSFLAGGLFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTRINSSTQLDLAD 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+ + P+RLAR++ Q + + K + N LIRP TTLFWII+YPLL+WW
Sbjct: 62 IKYAIEELKVDQPIRLARIKAQ----KVKSGVKWIDGLNTLIRPLTTLFWIIVYPLLVWW 117
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
V++G + PL++L+PF Q+IIACILGFW+TD IVQ+++G
Sbjct: 118 SVKEGIFDRSPLSILSPFEQEIIACILGFWYTDKIVQKKRG 158
>gi|315121924|ref|YP_004062413.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495326|gb|ADR51925.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats.
Identities = 80/161 (49%), Positives = 112/161 (69%), Gaps = 15/161 (9%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
+ SFL G I RF ++FVPS+F + EY+M+++SIE+D+++LE KI S+TQ+DL
Sbjct: 2 IQSFLAGGIFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTKINSSTQLDLAE 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+ + P+RLAR++ Q + K + NALIRP TTLFWII+YPLL+WW
Sbjct: 62 IKYGIEELKVDKPIRLARIKAQK----VKSGIKWIDGVNALIRPLTTLFWIIVYPLLVWW 117
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
V++GY K PL +L F Q+IIACILGFW+TD IVQ+R+G
Sbjct: 118 SVKEGYFDKSPLAVLTLFEQEIIACILGFWYTDKIVQKRRG 158
>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040665|gb|ACT57461.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 151
Score = 219 bits (557), Expect = 1e-55, Method: Composition-based stats.
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE
Sbjct: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
Query: 61 TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP
Sbjct: 61 TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
Query: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151
LTLLAPFTQDIIACILGFWFTDTIVQRRKGV
Sbjct: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151
>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040876|gb|ACT57672.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120664|gb|ADV02487.1| hypothetical protein SC1_gp005 [Liberibacter phage SC1]
gi|317120808|gb|ADV02629.1| hypothetical protein SC1_gp005 [Candidatus Liberibacter asiaticus]
Length = 157
Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 115/160 (71%), Gaps = 15/160 (9%)
Query: 1 MISFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
+ SFL G + RF ++F+PS F +++ EY+ K++SIE+D+L+LE+AK S+TQ+DL
Sbjct: 2 IQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAE 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+ + P+RLAR++ Q + + K + F ALIRP TT FWII+YPLL+WW
Sbjct: 62 IKAGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWW 117
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
V++G DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 118 SVKEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
>gi|317120748|gb|ADV02570.1| hypothetical protein SC2_gp250 [Liberibacter phage SC2]
gi|317120762|gb|ADV02583.1| hypothetical protein SC2_gp250 [Candidatus Liberibacter asiaticus]
Length = 157
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 74/160 (46%), Positives = 113/160 (70%), Gaps = 15/160 (9%)
Query: 1 MISFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
+ SFL G + RF ++F+PS F +++ EY+ K++SIE+D+ +LE AKI S+ Q+DL
Sbjct: 2 IQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSIEYDKWKLETAKIDSSLQLDLAD 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+++ P++LAR++ Q + K + FN L+RP TTLFWII+YP+++WW
Sbjct: 62 IKYGIEELKADKPIKLARIKAQ----NIKSGVKWIDSFNTLVRPLTTLFWIIVYPMMVWW 117
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
V++G K PL++L+PF Q+IIACILGFWFTD IVQ+R+
Sbjct: 118 SVKEGIFDKSPLSILSPFEQEIIACILGFWFTDKIVQKRR 157
>gi|317120705|gb|ADV02527.1| hypothetical protein SC2_gp005 [Liberibacter phage SC2]
gi|317120766|gb|ADV02587.1| hypothetical protein SC2_gp005 [Candidatus Liberibacter asiaticus]
Length = 158
Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats.
Identities = 77/161 (47%), Positives = 120/161 (74%), Gaps = 15/161 (9%)
Query: 1 MISFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKA 56
+ SFL G + RF ++F+PS F +++ EY+ K++S+E++++++E+AKI ++TQV+L+
Sbjct: 2 IQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSLEYNKMQIELAKINTSTQVNLEE 61
Query: 57 -------LESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
L+++ P+RLAR+++Q + + K + FNALIRP TTLFWI++YPLL+WW
Sbjct: 62 IKYGIEELKADKPIRLARVKSQ----NVKIDIKWINGFNALIRPLTTLFWIVVYPLLVWW 117
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
V++ + DPLTLL+PFTQ+IIACILGFW+TD IVQ+R G
Sbjct: 118 SVKERMFSIDPLTLLSPFTQEIIACILGFWYTDKIVQKRWG 158
>gi|315122344|ref|YP_004062833.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495746|gb|ADR52345.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 125
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 92/131 (70%), Gaps = 15/131 (11%)
Query: 29 MKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLARLQNQANEDQFERES 81
M+++SIE+D+ +LE+A+ +TQ+DL + L+ + P+RLAR++ Q F+
Sbjct: 1 MQKQSIEYDKTKLELAR--GSTQLDLADIKYAIEELKVDQPIRLARIKAQK----FKSGI 54
Query: 82 KAMIFFNALIRPFTTLFWIILYPLLIWW--GVEKGYLTKDPLTLLAPFTQDIIACILGFW 139
K + FNALIRP TT FWII+YPLL+W V++G + PL++L+PF QDIIACILGFW
Sbjct: 55 KWIDGFNALIRPLTTFFWIIIYPLLVWGIVCVKEGVFDRSPLSILSPFEQDIIACILGFW 114
Query: 140 FTDTIVQRRKG 150
+TD IVQ+++
Sbjct: 115 YTDKIVQKKRS 125
>gi|315122566|ref|YP_004063055.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495968|gb|ADR52567.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 130
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 61/131 (46%), Positives = 92/131 (70%), Gaps = 10/131 (7%)
Query: 29 MKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLARLQNQANEDQFERES 81
M+++SIE+++++LE +IQS+TQ+DL + L+ + P+RLAR++ Q + +
Sbjct: 1 MQKRSIEYEKMKLEQTRIQSSTQLDLADIKLGIEELKVDQPIRLARIKAQQVKSGIQWID 60
Query: 82 KAMIFFNALIRPFTTLFWIILYPLLIWWG--VEKGYLTKDPLTLLAPFTQDIIACILGFW 139
NALIRP TTLFWII +PLL+WW V++G + PL++L+PF QDIIACILGFW
Sbjct: 61 AFNALINALIRPLTTLFWII-FPLLVWWSMGVKEGIFDRSPLSILSPFEQDIIACILGFW 119
Query: 140 FTDTIVQRRKG 150
+TD IVQ+++
Sbjct: 120 YTDKIVQKKRS 130
>gi|315122770|ref|YP_004063259.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496172|gb|ADR52771.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 124
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/127 (40%), Positives = 87/127 (68%), Gaps = 15/127 (11%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
+ SFL G + RF ++F+PS+F + EY+M+++SIE+D+++LE+A+I S+TQ+DL
Sbjct: 2 IQSFLVGEVFRFALRFIPSVFEKIADGVLEYLMQKQSIEYDKMKLELARINSSTQLDLAD 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+++ +RLAR++ Q + + + FNA +RP T+LFWII+YPLL+WW
Sbjct: 62 IKLEIEELKADQLIRLARIKAQK----VKSGIQWIDGFNAFVRPLTSLFWIIVYPLLVWW 117
Query: 110 GVEKGYL 116
V+ G+L
Sbjct: 118 SVKGGHL 124
>gi|315121790|ref|YP_004062279.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495192|gb|ADR51791.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 121
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-- 54
M SFL + R ++F+PS+F + EY+M+++SIE+D+ +LE+A+I +TQ+DL
Sbjct: 2 MESFLASGLFRLALRFIPSVFEKIADGVLEYLMQKQSIEYDKTKLELARINGSTQLDLAD 61
Query: 55 -----KALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW 109
+ L+ + +RLAR++ Q + K + F++L LF ++
Sbjct: 62 IKYAIEELKVDQSIRLARIKAQKVKSG--SGVKWIDGFDSLNSTSHNLFLDYYLSVIGLV 119
Query: 110 GV 111
Sbjct: 120 EC 121
>gi|315122634|ref|YP_004063123.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496036|gb|ADR52635.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 228
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 13 FIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRL 65
I+ P F + E++M+++ IE+D+ +LE +IQSTTQ+DL + L+ + P+RL
Sbjct: 122 AIEMPPPKF--ISEHLMQKRFIEYDKTKLEQTRIQSTTQLDLADIKLGIEELKVDQPIRL 179
Query: 66 ARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYL 116
AR++ Q + K + FN+LIRP TT F E+G+L
Sbjct: 180 ARIKAQKVKSS--SGVKWIDGFNSLIRPLTTFFLDYYLSATRLVECERGHL 228
>gi|315122303|ref|YP_004062792.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495705|gb|ADR52304.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 115
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 64/104 (61%), Gaps = 16/104 (15%)
Query: 18 PSLFNLLE----EYIMKEKSIEHDRLRLEIAKIQSTTQVDL-------KALESETPVRLA 66
PS+F + EY+M+++SIE+D++ LE+ +I S+TQ+DL + L+ + +RLA
Sbjct: 14 PSVFEKIADGVLEYLMQKQSIEYDKMNLELPRINSSTQLDLADIKYAIEELKVDQSIRLA 73
Query: 67 RLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG 110
R++ Q ++ K + FNALIRP TT FWII++ +W
Sbjct: 74 RIKAQKVKNG--SGVKWIDGFNALIRPLTTFFWIIIF---RYWS 112
>gi|315122323|ref|YP_004062812.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495725|gb|ADR52324.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 40
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 111 VEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRKG 150
++ G + PL++L+PF QDIIACILGFW TD IVQ+++G
Sbjct: 1 MKGGIFDRSPLSILSPFEQDIIACILGFWCTDKIVQKKRG 40
>gi|315122322|ref|YP_004062811.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495724|gb|ADR52323.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 55
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 52 VDLKALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG 110
+ ++ L+ + P+RLAR++ Q + K + FNALIRP TT FWII++ +W
Sbjct: 1 MGIEELKVDQPIRLARIKAQK----VKSGVKWIDGFNALIRPLTTFFWIIVF---RYWS 52
>gi|315122321|ref|YP_004062810.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495723|gb|ADR52322.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 45
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 5 LTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTT 50
+ G + ++F PS+F+ + EY+M+++SIE+D+++ E +IQS T
Sbjct: 1 MQGGLFS-ALRFFPSVFDGVLEYLMQKQSIEYDKMKPEQTRIQSAT 45
>gi|17547913|ref|NP_521315.1| hypothetical protein RSc3194 [Ralstonia solanacearum GMI1000]
gi|17430219|emb|CAD16982.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
Length = 160
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 13 FIKFVPSLFNLLEEYIMKEKSIEHDRLR--LEIAKIQSTTQVDLKALESETPVRLARLQN 70
+K++ E M++K++E ++LR +A+I ++ E L++
Sbjct: 20 LLKWLDRKGERGHELAMQDKALEFEKLRGAQRMAEIGASADAAWNTGAIEA------LRD 73
Query: 71 QANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIW----WGVEKGY-LTKDPLTLLA 125
+ + + +RP T ++++Y + + G L +
Sbjct: 74 SITAQGEKTGVRWADALSTTVRPVVTYLFVLMYTGVKLSTFGGSAQAGVGFGPALLAAWS 133
Query: 126 PFTQDIIACILGFWFTDTIVQRRKG 150
Q ++A IL FWF + +RR G
Sbjct: 134 EADQALLAGILNFWFISRVWERRGG 158
>gi|20091901|ref|NP_617976.1| flagellar assembly protein J [Methanosarcina acetivorans C2A]
gi|19917097|gb|AAM06456.1| flagella accessory protein J [Methanosarcina acetivorans C2A]
Length = 520
Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 21 FNLLEEYIMKE-KSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQFER 79
++ +YI ++ K + + + +A I S+ + + L+ E +R + + E E
Sbjct: 92 YSKACQYISQKLKDVYLSKFLVRMANILSSGEQEKNFLKQEKIIR-EEIYSNEYERSVES 150
Query: 80 ESKAMIFFNALIRPFTTLFWIILYPLLIW 108
K +NAL+ T + IIL ++I+
Sbjct: 151 LKKWTDGYNALMVSVTLVVTIILVSVMIY 179
>gi|315122366|ref|YP_004062855.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495768|gb|ADR52367.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 52
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 106 LIWWGVEKGYLTKDPLTLLA----PFTQDIIACILGFWFTDTIVQRR 148
IW G+E + + L + QDII+ +LGFWF+D +V++
Sbjct: 5 FIWQGIESELFDQKTIATLLVTILEYGQDIISSVLGFWFSDGVVKKE 51
>gi|53803115|ref|YP_115083.1| hypothetical protein MCA2679 [Methylococcus capsulatus str. Bath]
gi|53756876|gb|AAU91167.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 158
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 30/160 (18%)
Query: 7 GSIARFF---IKFVPSLFNLLEEYIMKEKSIEHDRLR--LEIAKIQSTTQVDLKALESET 61
G R +K++ E M++K++E ++LR +A+I ++ + E
Sbjct: 11 GGAFRLAPEILKWLDRKGERGHELAMQDKALEFEKLRGAQRMAEIGASADAAWNSGAIEA 70
Query: 62 PVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILY------------PLLIWW 109
R Q + + + ++ +RP T +++ LY W
Sbjct: 71 LRDAVRTQGE------KTGVRWADALSSSVRPVITYWFMALYCAAKTAAFAAAVTAGAGW 124
Query: 110 GVEKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
GV L Q + A +L FWF + R +
Sbjct: 125 GV-------AILHAWTEADQALWAGVLNFWFLGRVFDRGR 157
>gi|329770469|ref|ZP_08261848.1| hypothetical protein HMPREF0433_01612 [Gemella sanguinis M325]
gi|328836324|gb|EGF85990.1| hypothetical protein HMPREF0433_01612 [Gemella sanguinis M325]
Length = 381
Score = 34.6 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 6 TGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRL 65
G +A F+ F S +++++ IE +EI I ++DL++ + P+ +
Sbjct: 245 AGGLAYGFLTFTNSEIKKGSDFMIEYLKIEEKIKEVEIV-ITGEGKLDLQSFMGKAPIEI 303
Query: 66 ARLQNQANEDQF----ERESKAMIFFNA 89
ARL + + K + NA
Sbjct: 304 ARLAKKYKKSVIFLAGTISDKEIDTLNA 331
>gi|91205650|ref|YP_538005.1| hypothetical protein RBE_0835 [Rickettsia bellii RML369-C]
gi|157826893|ref|YP_001495957.1| hypothetical protein A1I_02745 [Rickettsia bellii OSU 85-389]
gi|91069194|gb|ABE04916.1| unknown [Rickettsia bellii RML369-C]
gi|157802197|gb|ABV78920.1| hypothetical protein A1I_02745 [Rickettsia bellii OSU 85-389]
Length = 152
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query: 1 MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQST---TQVDLKAL 57
MI+ L +I F +P + + ++ K I+ ++ K+ + T++ +
Sbjct: 1 MITLLA-AITGFISSIIPEILKIYKDINDKRHEIDILDRQITNNKLNQSKTFTELTISQE 59
Query: 58 ESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWW---GVEKG 114
+E A ++ + N +RP + +Y ++ + ++
Sbjct: 60 MAEQ---------HALYSTYKSGVSWVDALNGSVRPVLAYSFFAMYGIVKYVQYKSLKSS 110
Query: 115 YLTKDPLTLL-APFTQDIIACILGFWFTDTIVQR 147
L L +L Q I A I+ F+F ++
Sbjct: 111 ALLVQYLDILWTIDDQTIFAGIISFYFGQRTFKK 144
>gi|85084787|ref|XP_957371.1| hypothetical protein NCU07146 [Neurospora crassa OR74A]
gi|28918462|gb|EAA28135.1| predicted protein [Neurospora crassa OR74A]
gi|28950244|emb|CAD71110.1| related to transport protein Uso1 [Neurospora crassa]
Length = 1077
Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 13 FIKFVPSLFNLLE---EYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQ 69
+K F+ L+ E +K++ + D+L+ E AK Q D L++ L +
Sbjct: 304 ALKQAQEAFDQLQAEKEKALKQERSDFDKLKTEQAKALRQAQSDFDKLKTGQEKVLEATK 363
Query: 70 NQANEDQFERESKAMIFFN 88
+ E A FN
Sbjct: 364 TTFLAESLETIDHAKDNFN 382
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.317 0.138 0.413
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,752,607,798
Number of Sequences: 14124377
Number of extensions: 103143598
Number of successful extensions: 393593
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 393486
Number of HSP's gapped (non-prelim): 83
length of query: 151
length of database: 4,842,793,630
effective HSP length: 114
effective length of query: 37
effective length of database: 3,232,614,652
effective search space: 119606742124
effective search space used: 119606742124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 76 (33.8 bits)