RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase,
           membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
           {Escherichia coli} (C:)
          Length = 204

 Score = 27.0 bits (59), Expect = 1.3
 Identities = 4/18 (22%), Positives = 9/18 (50%)

Query: 94  FTTLFWIILYPLLIWWGV 111
           F  + WI ++ ++   G 
Sbjct: 186 FLDVVWICVFTVVYLMGA 203


>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET:
           FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
           taurus} (C:70-261)
          Length = 192

 Score = 26.6 bits (58), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ LY  + WWG
Sbjct: 175 FVDVVWLFLYVSIYWWG 191


>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET:
           HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266)
          Length = 196

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ L+  +  WG
Sbjct: 179 FVDVVWLFLFASIYIWG 195


>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune
           system, complex (oxidoreductase/antibody), electron
           transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans}
           (C:78-273)
          Length = 196

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ L+ ++  WG
Sbjct: 179 FVDVVWLFLFVVIYIWG 195


>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein,
          epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4}
          (Y:)
          Length = 63

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 22 NLLEEY--IMKEKSIEHDRLRLEIAKIQSTTQVD 53
           LL+ Y  +   KS E+DRLRL + ++  +  VD
Sbjct: 22 QLLQHYREVAAAKSSENDRLRLLLKQMCPSLDVD 55


>2bw2_A Bypass of forespore C; sporulation, signaling protein,
          BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
          (A:68-140)
          Length = 73

 Score = 23.9 bits (52), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 33 SIEHDRLRLEIAKIQSTTQVDLKALESETPVRLAR 67
          S  H R       IQS  Q+DL+ LES     L +
Sbjct: 17 STFHGRPEPASEPIQSFFQIDLERLESHMQKNLLK 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,109,620
Number of extensions: 44914
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 18
Length of query: 151
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 70
Effective length of database: 2,217,844
Effective search space: 155249080
Effective search space used: 155249080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)