RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.5 bits (79), Expect = 0.009
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 20/58 (34%)

Query: 80  ESKAMIFFNALIRPFTTLFWIILYPLLIWWGVE--KGYLTKDPLTLLAPFT-QDIIAC 134
           ES    FF ++ +  T LF+I         GV   + Y    P T L P   +D +  
Sbjct: 290 ES----FFVSVRKAITVLFFI---------GVRCYEAY----PNTSLPPSILEDSLEN 330



 Score = 31.1 bits (70), Expect = 0.12
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 26/90 (28%)

Query: 24  LEEYIMKEKSIEH---DRLRLEIAKIQSTTQV-------DLKALESETPVRLARLQNQAN 73
           +++Y+   K+  H    + ++EI+ +     +        L  L       L + +  + 
Sbjct: 349 VQDYV--NKTNSHLPAGK-QVEISLVNGAKNLVVSGPPQSLYGLNL----TLRKAKAPSG 401

Query: 74  EDQ----F-ERESKAMIFFNALIRPFTTLF 98
            DQ    F ER+ K   F N  + P  + F
Sbjct: 402 LDQSRIPFSERKLK---FSNRFL-PVASPF 427


>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
           ATP-binding, nucleotide- binding, protein biosynthesis;
           HET: GLU; 2.45A {Synechococcus elongatus}
          Length = 492

 Score = 26.8 bits (58), Expect = 2.4
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 5   LTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTT 50
           LTG+         P L    +  I+ ++  +  RL   + + Q+T+
Sbjct: 447 LTGA------VHGPDLMAAWQ--ILHQRGWDEPRLAAALKQAQTTS 484


>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system,
           complex (oxidoreductase/antibody), electron transport;
           HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP:
           f.25.1.1
          Length = 273

 Score = 26.5 bits (58), Expect = 2.8
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ L+ ++  WG
Sbjct: 256 FVDVVWLFLFVVIYIWG 272


>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO
           HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
           SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C*
           2eil_C* 2eim_C* 2ein_C* 2zxw_C* 2occ_C* 1oco_C* 1occ_C*
           1ocz_C* 1ocr_C* 2dys_C*
          Length = 261

 Score = 25.8 bits (56), Expect = 4.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ LY  + WWG
Sbjct: 244 FVDVVWLFLYVSIYWWG 260


>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
           protein, oxidoreductase; HET: HEM HEO; 3.50A
           {Escherichia coli} SCOP: f.25.1.1
          Length = 204

 Score = 25.0 bits (54), Expect = 6.8
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 76  QFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
                ++  I   +L   F  + WI ++ ++   G 
Sbjct: 168 GLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGA 203


>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA
           PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB:
           1m57_C*
          Length = 266

 Score = 24.6 bits (53), Expect = 8.6
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ L+  +  WG
Sbjct: 249 FVDVVWLFLFASIYIWG 265


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,270,013
Number of extensions: 52530
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 20
Length of query: 151
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 67
Effective length of database: 3,656,734
Effective search space: 245001178
Effective search space used: 245001178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.4 bits)