RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)



>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase,
          C-terminal domain {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 215

 Score = 26.2 bits (57), Expect = 1.2
 Identities = 5/62 (8%), Positives = 22/62 (35%), Gaps = 19/62 (30%)

Query: 21 FNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANEDQFERE 80
            ++++Y+    +  H+   L++ +I                    R++ +    +++  
Sbjct: 15 AKIIKQYVKNTHAATHNAYDLKVVEIF-------------------RIEREGESQRYKPF 55

Query: 81 SK 82
           +
Sbjct: 56 KQ 57


>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit
           III {Cow (Bos taurus) [TaxId: 9913]}
          Length = 259

 Score = 25.8 bits (56), Expect = 1.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ LY  + WWG
Sbjct: 242 FVDVVWLFLYVSIYWWG 258


>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase
           subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 265

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + W+ L+  +  WG
Sbjct: 248 FVDVVWLFLFASIYIWG 264


>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 192

 Score = 24.4 bits (52), Expect = 4.5
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query: 123 LLAPF---TQDIIACILGFWFTDTIVQRRKGV 151
            + PF   TQ  +  +  FW  +      KGV
Sbjct: 29  TVEPFPEGTQMAVFGMGCFWGAERKFWTLKGV 60


>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III
           {Escherichia coli [TaxId: 562]}
          Length = 185

 Score = 24.3 bits (52), Expect = 4.6
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 94  FTTLFWIILYPLLIWWG 110
           F  + WI ++ ++   G
Sbjct: 168 FLDVVWICVFTVVYLMG 184


>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
           viridis [TaxId: 1079]}
          Length = 273

 Score = 23.9 bits (52), Expect = 5.6
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 83  AMIFFNALIRPFTTLFWIILYPLLIWWG 110
           ++I + A   P    F I + P  + +G
Sbjct: 47  SLIGYAASQGPTWDPFAISINPPDLKYG 74


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 23.9 bits (51), Expect = 6.4
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 12/118 (10%)

Query: 13  FIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVD-----LKALESETPVRLAR 67
           F+ +      L       E    H+       +  S          L +    + V  A+
Sbjct: 4   FVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAK 63

Query: 68  LQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDPLTLLA 125
           LQ+    +  E          A+  P + +  +I Y           +L       L 
Sbjct: 64  LQSILFSNYMEEYKVDFKRSTAIYNPMSEIGKLIEY-------SCLVFLPSPYAEQLK 114


>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
           {Escherichia coli [TaxId: 562]}
          Length = 518

 Score = 23.4 bits (50), Expect = 8.1
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 62  PVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILY 103
           P+   + ++        +E  +  +F  +IR +    W+I Y
Sbjct: 156 PMAFWQAKSGDISGADAKEKISAGYF-RVIRNYYRFGWVIPY 196


>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 308

 Score = 23.3 bits (50), Expect = 8.8
 Identities = 4/25 (16%), Positives = 9/25 (36%)

Query: 60  ETPVRLARLQNQANEDQFERESKAM 84
             P     +   ++  +   +SK M
Sbjct: 272 SIPETEIYIMENSDFGEVLEKSKRM 296


>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961
          {Thermotoga maritima [TaxId: 2336]}
          Length = 149

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 13/61 (21%), Positives = 23/61 (37%)

Query: 15 KFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESETPVRLARLQNQANE 74
            +P+L   ++ Y   EK I  +        I + T  +    ++E    L+RL   A  
Sbjct: 24 DLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKTPQESAQADAELSSALSRLLAIAEN 83

Query: 75 D 75
           
Sbjct: 84 Y 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,716
Number of extensions: 23516
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 16
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.9 bits)