BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780988|ref|YP_003065401.1| hypothetical protein
CLIBASIA_04445 [Candidatus Liberibacter asiaticus str. psy62]
         (151 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 151

 Score =  307 bits (786), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60
           MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE
Sbjct: 1   MISFLTGSIARFFIKFVPSLFNLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALESE 60

Query: 61  TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120
           TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP
Sbjct: 61  TPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGVEKGYLTKDP 120

Query: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151
           LTLLAPFTQDIIACILGFWFTDTIVQRRKGV
Sbjct: 121 LTLLAPFTQDIIACILGFWFTDTIVQRRKGV 151


>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 157

 Score =  160 bits (406), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 15/158 (9%)

Query: 3   SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE 58
           SFL G + RF ++F+PS F    +++ EY+ K++SIE+D+L+LE+AK  S+TQ+DL  ++
Sbjct: 4   SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63

Query: 59  S-------ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111
           +       + P+RLAR++ Q    + +   K +  F ALIRP TT FWII+YPLL+WW V
Sbjct: 64  AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119

Query: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149
           ++G    DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157


>gi|254780356|ref|YP_003064769.1| hypothetical protein CLIBASIA_01205 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 120

 Score = 23.1 bits (48), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 76  QFERESKAMIFFNALIRPFTTLFWIILYPLLIWWG 110
           Q E+E      F  +   F  +FW +  P +  WG
Sbjct: 22  QLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWG 56


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 21.6 bits (44), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 16  FVPSLFNLLEEYIMKEKSIEHDR---LRLEIAKIQS 48
           F P   N L+E I+ EK  + D    +R+++ ++ S
Sbjct: 744 FKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLS 779


>gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 412

 Score = 21.6 bits (44), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 111 VEKGYLTKDPLTLLAP 126
           VE G++TKD   L+ P
Sbjct: 365 VEDGFMTKDLALLIGP 380


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.142    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,690
Number of Sequences: 1233
Number of extensions: 3079
Number of successful extensions: 11
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 151
length of database: 328,796
effective HSP length: 67
effective length of query: 84
effective length of database: 246,185
effective search space: 20679540
effective search space used: 20679540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 34 (17.7 bits)