HHsearch alignment for GI: 254780989 and conserved domain: PRK13834
>PRK13834 putative autoinducer synthesis protein; Provisional.
Probab=95.72 E-value=0.14 Score=29.74 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEHHHHHCHHCCCCCCCEEEEEEEE-CCEEEEEEEEEEEEE-----------------
Q ss_conf 89999999997278766675615202541200025766548999989-878647999999886-----------------
Q gi|254780989|r 24 QVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRD-GDRIVGAIRATPIQI----------------- 85 (185)
Q Consensus 24 ~~aI~~L~~~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Vae~-d~~iVG~i~~~~~~~----------------- 85 (185)
T Consensus 18 l~~m~rlR~~vF~drLgW~v~~~~----g~E~D~fD~~~~~Yll~~~~~g~v~G~~RLlpTt~p~ML~~~Fp~ll~~~~~ 93 (207)
T PRK13834 18 LHQMHRLRARVFGGRLGWDVEIID----GCESDQFDDLKPTYILAISDSGRVAGCARLLPALGPTMLADVFPQLLPDGRL 93 (207)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 999999999997660586876899----9883268999986999990898489899633789976334705776389999
Q ss_pred -CCCCEEEEEEEEECHHHH---CCC----HHHHHHHHHHHHHHHCCCCEEEEECCHH---HHHHCCCEEHHHCCCCCCCC
Q ss_conf -067848998677525461---599----8999999999999988997999950832---54313858705278267798
Q gi|254780989|r 86 -GKYKGFLRGPLGVLSEYR---KRG----IGSRLAYMSFMAIKNSGAEFVLIDAKHD---WHKHLGFKKPHQHQIRYAHG 154 (185)
Q Consensus 86 -~~~~~~~l~~laV~P~~q---g~G----iG~~Li~~~l~~a~~~G~~~v~l~~~~~---~Y~r~GF~~~~~~~i~~~~~ 154 (185)
T Consensus 94 p~~~~i~E~SRF~Vd~~~~~~~~~~~~~~~t~~L~~a~ve~a~~~Gi~~ivtV~~~~~eRiL~R~G~~~~r-LG~p~~ig 172 (207)
T PRK13834 94 NAHPAMIESSRFCVDTTLAEGRGGGSLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQR-LGEPKAIG 172 (207)
T ss_pred CCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEE-CCCCEEEC
T ss_conf 99999899783489776665556887277899999999999998799889999438999999985995596-76887778
Q ss_pred CC
Q ss_conf 88
Q gi|254780989|r 155 GG 156 (185)
Q Consensus 155 ~~ 156 (185)
T Consensus 173 ~~ 174 (207)
T PRK13834 173 NT 174 (207)
T ss_pred CE
T ss_conf 87