HHsearch alignment for GI: 254780989 and conserved domain: TIGR03243
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.83 E-value=8.2e-05 Score=49.27 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=73.9
Q ss_pred EECCCCHHHHHHHHHHHHHHCCC--CCCCCCCCEEHHHHHCHH---CC-CCCCCEEEEEEEE--CCEEEEEEEEEEE---
Q ss_conf 75137975789999999997278--766675615202541200---02-5766548999989--8786479999998---
Q gi|254780989|r 15 TFANEQRVDQVAVDEVMVKAFLS--TQEITDDVLHKYVRNNVE---EP-LSFVRLMSFVCRD--GDRIVGAIRATPI--- 83 (185)
Q Consensus 15 ~IR~a~~~D~~aI~~L~~~aF~~--~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~Vae~--d~~iVG~i~~~~~--- 83 (185)
T Consensus 1 viRpv~~~Dl~~l~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sf~~~~~~~~~~YlFVLED~~tg~vvG~s~I~a~vG~ 80 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGL 80 (335)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 94437323099999999973998655999999999999999998648778887348999987789918998746761458
Q ss_pred -------EE----------------------CCC-CEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHHCCC---CEEEE-
Q ss_conf -------86----------------------067-848998677525461599899999999999998899---79999-
Q gi|254780989|r 84 -------QI----------------------GKY-KGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGA---EFVLI- 129 (185)
Q Consensus 84 -------~~----------------------~~~-~~~~l~~laV~P~~qg~GiG~~Li~~~l~~a~~~G~---~~v~l- 129 (185)
T Consensus 81 ~~Pfy~yr~~~~~h~S~~L~~~~~~~~L~l~~d~tg~sEl~tLfl~p~~R~~~~G~lLS~~RflFma~~~~rF~~~viAE 160 (335)
T TIGR03243 81 DEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAE 160 (335)
T ss_pred CCCCEEEEECCEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88747999175565063468721211699762787870579999877873787245899999999987376643678854
Q ss_pred -------ECCHHHHHHCCC
Q ss_conf -------508325431385
Q gi|254780989|r 130 -------DAKHDWHKHLGF 141 (185)
Q Consensus 130 -------~~~~~~Y~r~GF 141 (185)
T Consensus 161 mRG~~d~~G~SPFW~~lg~ 179 (335)
T TIGR03243 161 MRGVSDEQGRSPFWEALGR 179 (335)
T ss_pred CCCCCCCCCCCCCHHHHHC
T ss_conf 1787389999830787634