HHsearch alignment for GI: 254780989 and conserved domain: TIGR03585

>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.64  E-value=9.7e-07  Score=60.89  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=84.5

Q ss_pred             ECCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCEEHHHHHCHHCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCE
Q ss_conf             513797578999999999-----727876667561520254120002576654899998987864799999988606784
Q gi|254780989|r   16 FANEQRVDQVAVDEVMVK-----AFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYKG   90 (185)
Q Consensus        16 IR~a~~~D~~aI~~L~~~-----aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Vae~d~~iVG~i~~~~~~~~~~~~   90 (185)
T Consensus         3 LRpl~~~D~~~i~~WrNdpev~~~~~~~~~~s~ee~~~w~~~----~~~~~~~~~~ii~~~~~~IG~i~l~~id~~~-~~   77 (156)
T TIGR03585         3 FTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEA----LKQDPNRRYWIVCQESRPIGVISFTDINLVH-KS   77 (156)
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH----HHCCCCCEEEEEEECCCEEEEEEEEECCCCC-CE
T ss_conf             876999999999999589999975289887799999999999----7459973899999799289999887403003-98


Q ss_pred             EEEEEEEECHHHHCCCHHHHHHHHHHHHHH-HCCCCEEEEECCH------HHHHHCCCEEHHHC
Q ss_conf             899867752546159989999999999999-8899799995083------25431385870527
Q gi|254780989|r   91 FLRGPLGVLSEYRKRGIGSRLAYMSFMAIK-NSGAEFVLIDAKH------DWHKHLGFKKPHQH  147 (185)
Q Consensus        91 ~~l~~laV~P~~qg~GiG~~Li~~~l~~a~-~~G~~~v~l~~~~------~~Y~r~GF~~~~~~  147 (185)
T Consensus        78 ae~g-i~~~~-~~~~G~g~~~~~~~l~~aF~~l~l~rl~~~v~~~N~~si~l~ek~GF~~EG~l  139 (156)
T TIGR03585        78 AFWG-IYANP-FCKPGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF  139 (156)
T ss_pred             EEEE-EEECH-HHCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEE
T ss_conf             9999-98222-10257799999999999987569269999962568999999997899999998