HHsearch alignment for GI: 254780989 and conserved domain: TIGR03585
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.64 E-value=9.7e-07 Score=60.89 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred ECCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCEEHHHHHCHHCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCE
Q ss_conf 513797578999999999-----727876667561520254120002576654899998987864799999988606784
Q gi|254780989|r 16 FANEQRVDQVAVDEVMVK-----AFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYKG 90 (185)
Q Consensus 16 IR~a~~~D~~aI~~L~~~-----aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Vae~d~~iVG~i~~~~~~~~~~~~ 90 (185)
T Consensus 3 LRpl~~~D~~~i~~WrNdpev~~~~~~~~~~s~ee~~~w~~~----~~~~~~~~~~ii~~~~~~IG~i~l~~id~~~-~~ 77 (156)
T TIGR03585 3 FTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEA----LKQDPNRRYWIVCQESRPIGVISFTDINLVH-KS 77 (156)
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH----HHCCCCCEEEEEEECCCEEEEEEEEECCCCC-CE
T ss_conf 876999999999999589999975289887799999999999----7459973899999799289999887403003-98
Q ss_pred EEEEEEEECHHHHCCCHHHHHHHHHHHHHH-HCCCCEEEEECCH------HHHHHCCCEEHHHC
Q ss_conf 899867752546159989999999999999-8899799995083------25431385870527
Q gi|254780989|r 91 FLRGPLGVLSEYRKRGIGSRLAYMSFMAIK-NSGAEFVLIDAKH------DWHKHLGFKKPHQH 147 (185)
Q Consensus 91 ~~l~~laV~P~~qg~GiG~~Li~~~l~~a~-~~G~~~v~l~~~~------~~Y~r~GF~~~~~~ 147 (185)
T Consensus 78 ae~g-i~~~~-~~~~G~g~~~~~~~l~~aF~~l~l~rl~~~v~~~N~~si~l~ek~GF~~EG~l 139 (156)
T TIGR03585 78 AFWG-IYANP-FCKPGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred EEEE-EEECH-HHCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCCEEEEEE
T ss_conf 9999-98222-10257799999999999987569269999962568999999997899999998