HHsearch alignment for GI: 254780989 and conserved domain: pfam02474
>pfam02474 NodA Nodulation protein A (NodA). Rhizobia nodulation (nod) genes control the biosynthesis of Nod factors required for infection and nodulation of their legume hosts. Nodulation protein A (NodA) is a N-acetyltransferase involved in production of Nod factors that stimulate mitosis in various plant protoplasts.
Probab=96.96 E-value=0.0031 Score=39.79 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHCHHCCCCCCCEEEEEEEECCEEEEEEEEEE--EEECCCCE--EEEEE
Q ss_conf 975789999999997278766675615202541200025766548999989878647999999--88606784--89986
Q gi|254780989|r 20 QRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATP--IQIGKYKG--FLRGP 95 (185)
Q Consensus 20 ~~~D~~aI~~L~~~aF~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Vae~d~~iVG~i~~~~--~~~~~~~~--~~l~~ 95 (185)
T Consensus 16 ~l~dH~eLaeFfrktYgptgafnakpFe-----G~RSWAGARPElR~IgyD~~GVaAH~G~LRRFIkVg~vDlLVaELGL 90 (196)
T pfam02474 16 QLADHIELSEFFRKTYGPTGAFNAKPFE-----GGRSWAGARPELRAIAYDSRGVAAHMGLLRRFIKVGEVDLLVAELGL 90 (196)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHEECCEEEEEEEEEE
T ss_conf 5111699999999842887643466567-----77564557851378876573088988888775124761013443001
Q ss_pred EEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCHH---HHHHCC
Q ss_conf 775254615998999999999999988997999950832---543138
Q gi|254780989|r 96 LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD---WHKHLG 140 (185)
Q Consensus 96 laV~P~~qg~GiG~~Li~~~l~~a~~~G~~~v~l~~~~~---~Y~r~G 140 (185)
T Consensus 91 ygVRpDlEGlGi~~s-~~~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T pfam02474 91 YGVRPDLEGLGISHS-MRVMYPVLQELGVPFAFGTVRHALRKHVERLC 137 (196)
T ss_pred EEECCCCCCCCHHHH-HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHH
T ss_conf 476565133534677-98998888862997452352598999999982