RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>gnl|CDD|179611 PRK03624, PRK03624, putative acetyltransferase; Provisional.
          Length = 140

 Score = 31.4 bits (72), Expect = 0.15
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 66  FVCRDGDRIVGAIRATPIQIGKYKGFLRG---PLGVLSEYRKRGIGSRL 111
            V   G  +VG +      +G Y G  RG    L V  ++R RGIG  L
Sbjct: 48  LVAEVGGEVVGTV------MGGYDGH-RGWAYYLAVHPDFRGRGIGRAL 89


>gnl|CDD|150404 pfam09724, DUF2036, Uncharacterized conserved protein (DUF2036).
           This family of proteins includes members ranging in size
           from approximately 300 to 460 residues. There are a
           number of well-conserved domains along the length.
          Length = 325

 Score = 30.0 bits (68), Expect = 0.36
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 14  LTFANEQRVDQVAVD-EVMVKAFLS---TQEITDDVLHKYVRNNVEEPLSFVRLMSFVCR 69
           L   +    D   V  + +V+A       +E+ + VL+K+     EE   F      VCR
Sbjct: 175 LVLLDSNSWDLDEVSLDEVVEALRPSEYPEEVIETVLNKFGTKESEEGDRFALDEDKVCR 234

Query: 70  D-GDRIVGAIRATPIQI 85
              ++++    A  + +
Sbjct: 235 WFAEQLLQKGLAGKMNL 251


>gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional.
          Length = 152

 Score = 29.4 bits (67), Expect = 0.58
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 27/58 (46%)

Query: 66  FVCRDGDRIVGA------------IRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRL 111
           +V  +   IVG             IR+               L V  +YR +GIG  L
Sbjct: 44  YVAEEEGEIVGCCALHILWEDLAEIRS---------------LAVSEDYRGQGIGRML 86


>gnl|CDD|182261 PRK10137, PRK10137, alpha-glucosidase; Provisional.
          Length = 786

 Score = 28.2 bits (63), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 140 GFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSLRRE 183
           GF    Q   +Y   GG  +DW V   +N   +  +   SL +E
Sbjct: 534 GFIDKEQLD-KYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQE 576


>gnl|CDD|182877 PRK10975, PRK10975, TDP-fucosamine acetyltransferase; Provisional.
          Length = 194

 Score = 27.6 bits (62), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 94  GPLGVLSEYRKRGIGSRL 111
           G L V    + RGIG+RL
Sbjct: 130 GLLAVFPGAQGRGIGARL 147


>gnl|CDD|183334 PRK11836, PRK11836, deubiquitinase; Provisional.
          Length = 403

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 43 DDVLHKYVRNNVEEPLSFVRLMSFVC 68
          +D+L+  VRN   E LS +RL+   C
Sbjct: 65 EDILYHIVRNPTNETLSIIRLIKNAC 90


>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
           Provisional.
          Length = 1037

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 11/36 (30%)

Query: 30  VMVKAFLST------QEITDDVLHKYVRNNVEEPLS 59
           ++  AF+ST      Q+I D     YV +N+++PLS
Sbjct: 137 ILTIAFVSTDGSMDKQDIAD-----YVASNIQDPLS 167


>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
           Provisional.
          Length = 672

 Score = 26.0 bits (58), Expect = 5.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 12/47 (25%)

Query: 44  DVLHKY--VR--------NNVEEPLSFVRLMSFVCRDGDRIVGAIRA 80
           DVL  Y  VR        N+V   ++ VR      R GD + GA+RA
Sbjct: 301 DVLDNYAFVRTSGYLPGPNDVYVSMNQVRKNGL--RKGDAVTGAVRA 345


>gnl|CDD|173036 PRK14572, PRK14572, D-alanyl-alanine synthetase A; Provisional.
          Length = 347

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 19  EQRVDQVAV-----DEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFV 61
           EQ +  +A+      +VM ++FLS  E++  VL +Y R     P++  
Sbjct: 194 EQLMTLLALIFESDSKVMSQSFLSGTEVSCGVLERY-RGGKRNPIALP 240


>gnl|CDD|150001 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2, catalytic.
           Members of this family adopt a secondary structure
           consisting of two beta sheets and one alpha helix,
           arranged as a beta-alpha-beta motif. Each beta sheet has
           five strands, arranged in a 32145 order, with the second
           strand being antiparallel to the rest. They are capable
           of resolving Holliday junctions and cleave DNA after
           5'-CT-3' and 5'-TT-3' sequences.
          Length = 253

 Score = 25.8 bits (57), Expect = 5.8
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 138 HLGFKKPHQHQI---RYAHGGGAAT-DWLVHIFKNNIMENMI 175
            L   KP    I   R+  GG +A  +W     + N++E+M+
Sbjct: 74  LLLPYKPTHVLIERQRFRSGGSSAVLEW---TLRVNMLESML 112


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 25.5 bits (56), Expect = 8.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 32  VKAFLST---QEITDDVLHKYVRNNVEEPLSFV---RLMSFVCR--DGDRIVGAIRATPI 83
           ++ FL     Q ++ D++  Y+++  E P+SF    R    V R  D   I+ A+ +T +
Sbjct: 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTIL 274

Query: 84  QI 85
            +
Sbjct: 275 SL 276


>gnl|CDD|162142 TIGR00975, 3a0107s03, phosphate ABC transporter, phosphate-binding
           protein.  This family represents one type of
           (periplasmic, in Gram-negative bacteria)
           phosphate-binding protein found in phosphate ABC
           (ATP-binding cassette) transporters. This protein is
           accompanied, generally in the same operon, by an ATP
           binding protein and (usually) two permease proteins.
          Length = 314

 Score = 25.5 bits (56), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 111 LAYMSFMAIKNSGAEFVLIDAK 132
              +SF A+KNS  +FVL DA+
Sbjct: 201 QNKLSFAALKNSAGKFVLPDAE 222


>gnl|CDD|150336 pfam09635, MetRS-N, MetRS-N binding domain.  The MetRS-N domain
           binds an Arc1-P domain in a tetrameric complex
           resembling a classical GST homo-dimer. Domain-swapping
           between symmetrically related MetRS-N and Arc1p-N
           domains generates a 2:2 tetramer held together by van
           der Waals forces. This domain is necessary for formation
           of the aminoacyl-tRNA synthetase complex necessary for
           tRNA nuclear export and shuttling as part of the
           translational apparatus. The domain is associated with
           pfam09334.
          Length = 122

 Score = 25.2 bits (55), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 40  EITDDVLHKYVRNNVEEPLSFVRLMSF 66
           E+T+  L  Y+  + +EPL+  RL+ F
Sbjct: 93  ELTNKSLENYL-VSKKEPLTATRLIVF 118


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,093,146
Number of extensions: 193971
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 24
Length of query: 185
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,092,969
Effective search space: 397017993
Effective search space used: 397017993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)