RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>3n7z_A Acetyltransferase, GNAT family; PSI2, MCSG, structural genomics,
protein structure initiativ midwest center for
structural genomics; 2.75A {Bacillus anthracis}
Length = 388
Score = 48.3 bits (114), Expect = 1e-06
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 15/137 (10%)
Query: 17 ANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVG 76
E + + + AF ++ +D L + + E + +G+ +
Sbjct: 9 LKEDKFREAL--RLSEYAF--QYKVDEDRLQQQITKMKE------SHEVYGIMEGENLAA 58
Query: 77 AIRATPIQI----GKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFV-LIDA 131
+ P I K+K + EYR+ G L S +K G L
Sbjct: 59 KLHLIPFHIYIGKEKFKMGGVAGVATYPEYRRSGYVKELLQHSLQTMKKDGYTVSMLHPF 118
Query: 132 KHDWHKHLGFKKPHQHQ 148
+++ G++
Sbjct: 119 AVSFYRKYGWELCANLL 135
>2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest
center for structural genomics, MCSG, structural
genomics; HET: EPE PG4; 2.40A {Enterococcus faecalis}
SCOP: d.106.1.4 d.108.1.10
Length = 400
Score = 47.9 bits (113), Expect = 1e-06
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 64 MSFVCRDGDRIVGAIRATPIQI----GKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAI 119
S+ +++ + ATP Q+ +Y G + EYR G S + +
Sbjct: 48 QSYGFLIDEQLTSQVMATPFQVNFHGVRYPMAGIGYVASYPEYRGEGGISAIMKEMLADL 107
Query: 120 KNSGAEF-VLIDAKHDWHKHLGFKKPHQH 147
L + +++ G+++ +
Sbjct: 108 AKQKVALSYLAPFSYPFYRQYGYEQTFEQ 136
>3ddd_A Putative acetyltransferase; NP_142035.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: COA; 2.25A {Pyrococcus horikoshii}
Length = 288
Score = 43.5 bits (102), Expect = 3e-05
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 8 NIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFV 67
N+ +G+ D + + + A+ + V+++ E L +
Sbjct: 14 NLYFQGMIIRYATPDDIEDMVSIFIDAYNFPGP------RESVKSSFEISLEVQPDGCLL 67
Query: 68 CRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFV 127
D VG K ++ G +GV Y++RGIG+ + +
Sbjct: 68 AFLKDEPVGMGC--IFFYNKQ-AWI-GLMGVKKAYQRRGIGTEVFRRLLEIGRRKVDTIR 123
Query: 128 LI--DAKHDWHKHLGFKKPHQHQIRY 151
L + +K F ++ +RY
Sbjct: 124 LDASSQGYGLYKKFKFVDEYRT-VRY 148
>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis;
HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A*
Length = 339
Score = 43.1 bits (100), Expect = 3e-05
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 62 RLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKN 121
L +V R G R+VGA+R + L V R+RGIG L + +
Sbjct: 58 ALDDWVVRSGGRVVGALRLALPDGAPTARVDQ--LLVHPGRRRRGIGRALWAHARELARK 115
Query: 122 SGAEFVLIDAKHDWHKHLGFKKPHQHQIR 150
+
Sbjct: 116 HDRTTLTATVVESLPSGPAQDPGPAAFAA 144
Score = 26.5 bits (57), Expect = 3.3
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 94 GPLGVLSEYRKRGIGSRL--AYMSFMAIKNSGAEFVLIDAKHD------WHKHLGFKKPH 145
G V E+R +G+ L A + ++ V D + LGF +P+
Sbjct: 267 GMTVVHREHRGHALGTLLKLANLEYVLRHEPEVRLVETANAEDNHPMIAVNAALGF-EPY 325
Query: 146 QHQIRYAHGGGAA 158
+ + G +
Sbjct: 326 DRWVFWTAEAGPS 338
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; 1.70A
{Bacillus subtilis} SCOP: d.108.1.1
Length = 157
Score = 41.2 bits (96), Expect = 1e-04
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 65 SFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGA 124
SF+ + + + G + Q ++ GV ++RK IG +L + +K G
Sbjct: 44 SFITSEHNSMTGFLIGFQSQSDPETAYIHF-SGVHPDFRKMQIGKQLYDVFIETVKQRGC 102
Query: 125 EFVLIDAKHD------WHKHLGFK 142
V +H LGF
Sbjct: 103 TRVKCVTSPVNKVSIAYHTKLGFD 126
>2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransferase
(GNAT) family, structural genomics, joint center for
structural genomics; HET: COA; 2.00A {Anabaena
variabilis} SCOP: d.106.1.4 d.108.1.10
Length = 396
Score = 40.5 bits (94), Expect = 2e-04
Identities = 13/141 (9%), Positives = 39/141 (27%), Gaps = 16/141 (11%)
Query: 12 EGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDG 71
+ + + + ++ + F+ + ++ + N V
Sbjct: 8 PRFKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF-----------RVIYRE 56
Query: 72 DRIVGAIRATPIQI----GKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFV 127
++ G + P+ + +G+ EYR G L + I
Sbjct: 57 QKVAGGLAILPMGQWWGGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPIS 116
Query: 128 LIDAKHDWH-KHLGFKKPHQH 147
++ + G+++
Sbjct: 117 VLYPATQRLYRKAGYEQAGSS 137
>1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA
KAN PAP; 1.50A {Mycobacterium tuberculosis H37RV} SCOP:
d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A*
Length = 181
Score = 40.1 bits (93), Expect = 3e-04
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 64 MSFVCRDGDRIVGAIRATPIQIGKYKGFLR----GPLGVLSEYRKRGIGSRLAYMSFMAI 119
M + I+ ++ LR + V +++R + + S L +
Sbjct: 48 MHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVM 107
Query: 120 KNSGAEFVL--IDAKHDWHKHLGFKKPHQHQIRYAHGG 155
+ + L + G+ H A G
Sbjct: 108 RGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTG 145
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Length = 157
Score = 36.9 bits (85), Expect = 0.003
Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 26 AVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQI 85
+ + + + + + K + L+ L+ ++ + ++I+ I
Sbjct: 14 LLVSIRKRQLIDEGIEPNIDIDKELTRYFNNKLANNLLVEWIAEENNQIIATAAIAFIDF 73
Query: 86 GKYKGFLRGP------LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD---WH 136
G + R GI + + K + + A +
Sbjct: 74 PPTYTNKTGRKGYITNMYTEPTSRGNGIATGMLDRLVNEAKERNIHKICLVASKLGRPVY 133
Query: 137 KHLGFKK 143
K GF+
Sbjct: 134 KKYGFQD 140
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148,
PSI-2, protein structure initiative; 2.15A {Bacteroides
thetaiotaomicron}
Length = 181
Score = 36.3 bits (83), Expect = 0.005
Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 20/171 (11%)
Query: 9 IELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVC 68
I + +T ++ Q + E++V++F + + L +Y + +
Sbjct: 5 IRFQPITTSDVQHYKFME--ELLVESFPPEEYRELEHLREYTDRIG-------NFHNNII 55
Query: 69 RDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVL 128
D D +G I Y R G G R +K V
Sbjct: 56 FDDDLPIGFITYWDFDEFYYVEHF----ATNPALRNGGYGKRTLEHLCEFLKRPIVLEVE 111
Query: 129 IDAKHD------WHKHLGFKK-PHQHQIRYAHGGGAATDWLVHIFKNNIME 172
+ +++ GF + G + + N E
Sbjct: 112 RPVEEMAKRRINFYQRHGFTLWEKDYYQPPYKEGDDFLPMYLMVHGNLDAE 162
>3frm_A Uncharacterized conserved protein; APC61048, structural genomics,
PSI-2, protein structure initiative; HET: MES; 2.32A
{Staphylococcus epidermidis atcc 12228}
Length = 254
Score = 35.0 bits (80), Expect = 0.010
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 21/107 (19%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
V + VG + I + + G GVL E++ +GIGS +
Sbjct: 167 LVAYVNHQPVGIVD---IIMTDKTIEIDG-FGVLEEFQHQGIGSEIQAYVGRMANERPVI 222
Query: 126 FVLI--DAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNI 170
V D D + G+ +Y HI K NI
Sbjct: 223 LVADGKDTAKDMYLRQGYV---YQGFKY------------HILKENI 254
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 34.6 bits (79), Expect = 0.015
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
+ GD + G + + + V +K+G G +L + K GA+
Sbjct: 42 YTAWAGDELAGVYVLLKTRPQTVEIVN---IAVKESLQKKGFGKQLVLDAIEKAKKLGAD 98
Query: 126 FVLID------AKHDWHKHLGFKK 143
+ I + ++ GF+
Sbjct: 99 TIEIGTGNSSIHQLSLYQKCGFRI 122
>1qst_A TGCN5 histone acetyl transferase; GCN5-related N-acetyltransferase,
COA binding protein; HET: EPE; 1.70A {Tetrahymena
thermophila} SCOP: d.108.1.1 PDB: 1m1d_A* 1pu9_A*
1pua_A* 5gcn_A* 1qsr_A* 1q2d_A* 1q2c_A* 1qsn_A*
Length = 160
Score = 34.2 bits (78), Expect = 0.020
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
+ ++ +++G I + ++ L V + + RG G+RL ++ E
Sbjct: 50 VILKNKQKVIGGICFRQYKPQRFAEVAF--LAVTANEQVRGYGTRLMNKFKDHMQKQNIE 107
Query: 126 FVLIDAKHD---WHKHLGFKK 143
++L A + + K GF K
Sbjct: 108 YLLTYADNFAIGYFKKQGFTK 128
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 33.9 bits (77), Expect = 0.021
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
+ + G G + L V + + G G RL + G
Sbjct: 349 SILEHDGNLYGCAALKTFAEAD-CGEIAC-LAVSPQAQDGGYGERLLAHIIDKARGIGIS 406
Query: 126 --FVLIDAKHDWHKHLGFKK------PHQHQIRY 151
F L +W GF+ P + Y
Sbjct: 407 RLFALSTNTGEWFAERGFQTASEDELPETRRKDY 440
>1vkc_A Putative acetyl transferase; structural genomics, southeast
collaboratory for structural genomics, secsg, protein
structure initiative, PSI; 1.89A {Pyrococcus furiosus}
SCOP: d.108.1.1
Length = 158
Score = 33.9 bits (77), Expect = 0.024
Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 18 NEQRVDQV-AVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGD-RIV 75
E+ ++++ +D + +F+ ++ ++ E LS FV + ++
Sbjct: 16 GEEYIEEIKKLDREISYSFVRFPISYEEYEERH-EELFESLLSQGEHKFFVALNERSELL 74
Query: 76 GAIRATPIQ---IGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAK 132
G + ++ + V+ R GIGS L + K GA+ +++ +
Sbjct: 75 GHVWICITLDTVDYVKIAYIYD-IEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVE 133
Query: 133 HD-----WHKHLGFK 142
D W++ G+K
Sbjct: 134 IDNPAVKWYEERGYK 148
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Drosophila melanogaster} SCOP:
d.108.1.5
Length = 312
Score = 33.5 bits (76), Expect = 0.032
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 20/113 (17%)
Query: 44 DVLHKYVRNNVEEPLSFVRL-------MSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPL 96
++H N E L++++ + D ++ I L G L
Sbjct: 185 AMVHDSWPNKGEGSLTYLQALVRFNKSLGICRSDTGELIAWIFQNDF------SGL-GML 237
Query: 97 GVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD------WHKHLGFKK 143
VL + +RG+G LA I + K +G++K
Sbjct: 238 QVLPKAERRGLGGLLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQK 290
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 33.3 bits (75), Expect = 0.035
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 64 MSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSG 123
++ D D +VG I A P L V S RK IG+RL + + G
Sbjct: 46 IAVAAVDQDELVGFIGAIPQYGITGWELHP--LVVESSRRKNQIGTRLVNYLEKEVASRG 103
Query: 124 AEFVLIDAKHDWHKH 138
+ + H
Sbjct: 104 GITIYLGTDDLDHGT 118
>3c26_A Putative acetyltransferase TA0821; NP_394282.1, A putative
acetyltransferase, acetyltransferase (GNAT) family;
2.00A {Thermoplasma acidophilum dsm 1728}
Length = 266
Score = 32.7 bits (74), Expect = 0.045
Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 10/130 (7%)
Query: 36 LSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGP 95
L ++ + YV +E ++ + +V R R V I + L G
Sbjct: 35 LYSKLADTGTMDDYVDKVIERWVNDGSV--YVLRVSGRPVATIHMEKLP--DGSVMLGG- 89
Query: 96 LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLI-----DAKHDWHKHLGFKKPHQHQIR 150
L V EYR +G + + ++ + LGF + ++ I
Sbjct: 90 LRVHPEYRGSRLGMSIMQETIQFLRGKTERLRSAVYSWNEPSLRLVHRLGFHQVEEYPIY 149
Query: 151 YAHGGGAATD 160
GG A
Sbjct: 150 TFQGGSTAVP 159
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel beta strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Length = 158
Score = 32.5 bits (73), Expect = 0.053
Identities = 12/123 (9%), Positives = 34/123 (27%), Gaps = 6/123 (4%)
Query: 27 VDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIG 86
+E + ++ + + + + + IVG +
Sbjct: 25 AEEKVKAGTWLPEDAQLLSKQVFTDLLPRGLETPHHHLWSLKLNEKDIVGWLWIHAEPEH 84
Query: 87 KYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD------WHKHLG 140
+ G+ YR +G + A ++ G + + ++ G
Sbjct: 85 PQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTG 144
Query: 141 FKK 143
F++
Sbjct: 145 FQE 147
>2ob0_A Human MAK3 homolog; acetyltransferase, structural genomics
consortium, SGC; HET: ACO; 1.80A {Homo sapiens} PDB:
2psw_A*
Length = 170
Score = 32.0 bits (72), Expect = 0.078
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 65 SFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGA 124
+ + D VGA+ K LG L+ YR+ GIG+++ + G
Sbjct: 47 AKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGT 106
Query: 125 E-------FVLIDAKHDWHKHLGFKKPHQHQIRYAHGGG 156
+ ++ D+++ GF+ + Y
Sbjct: 107 FDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEP 145
>1q2y_A Protein YJCF, similar to hypothetical proteins; GCN5-related
N-acetyltransferase superfamily fold, NYSGXRC, PSI,
protein structure initiative; 2.00A {Bacillus subtilis}
SCOP: d.108.1.1
Length = 140
Score = 30.4 bits (68), Expect = 0.23
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
V DG++ VGA R K + VL +R G+G + A + GA
Sbjct: 45 IVVYDGEKPVGAGRWRM----KDGYGKLERICVLKSHRSAGVGGIIMKALEKAAADGGAS 100
Query: 126 FVLIDAKHD---WHKHLGFKK 143
+++A+ ++K G++
Sbjct: 101 GFILNAQTQAVPFYKKHGYRV 121
>1p0h_A Hypothetical protein RV0819; GNAT fold, acetyltransferase, coenzyme
A complex, MSHD; HET: COA ACO; 1.60A {Mycobacterium
tuberculosis H37RV} SCOP: d.108.1.1 PDB: 1ozp_A* 2c27_A*
Length = 318
Score = 30.4 bits (67), Expect = 0.28
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 62 RLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKN 121
L+ R G I+G + +P + G L V + R+RGIG+ + K
Sbjct: 52 HLLVAGSRPGGPIIGYLNLSPPRGA---GGAMAELVVHPQSRRRGIGTAM--ARAALAKT 106
Query: 122 SGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAH 153
+G D +
Sbjct: 107 AGRNQFWAHGTLDPARATASALGLVGVRELIQ 138
Score = 29.6 bits (65), Expect = 0.45
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 5/114 (4%)
Query: 22 VDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVE----EPLSFVRLMSFVCRDGDRIVGA 77
D + V AF E + E + R++G
Sbjct: 164 SDDAELLRVNNAAFAGHPEQGGWTAVQLAERRGEAWFDPDGLILAFGDSPRERPGRLLGF 223
Query: 78 IRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDA 131
G + LGV ++RG+G L + +++ +D
Sbjct: 224 HWTKVHPDHPGLGEV-YVLGVDPAAQRRGLGQMLTSIGIVSLARRLGGRKTLDP 276
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 29.9 bits (67), Expect = 0.36
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 56/148 (37%)
Query: 14 LTFANEQRVDQVAVDEVMVKA-------FLST------QEITDDVLHKYVRNNVEEPLSF 60
L A++ + + V A + T + ++ + + V + P+ +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 61 VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGP-----LGVLSEYRKRGIGSR--LAY 113
F +AT I + F GP LGVL+ K G G R +A
Sbjct: 491 ETTTQF------------KATHI-LD----F--GPGGASGLGVLTHRNKDGTGVRVIVA- 530
Query: 114 MSFMAIKNSGAEFVLIDAKHDWHKHLGF 141
G +D D GF
Sbjct: 531 ---------GT----LDINPD--DDYGF 543
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus
solfataricus}
Length = 168
Score = 29.6 bits (66), Expect = 0.42
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 47 HKYVRNNVEEPLSFVRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGP--------LGV 98
Y E L L FV + +VG I L + V
Sbjct: 36 ENYPYYFFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAV 95
Query: 99 LSEYRKRGIGSRLAYMSFMAIKNSGAEFVLI-------DAKHDWHKHLGFKK 143
L EYR++GI + L S ++KN + ++ L FKK
Sbjct: 96 LEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKK 147
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette
protein, mobIle metagenome, structural genomics, PSI-2;
1.45A {Uncultured bacterium}
Length = 176
Score = 27.8 bits (61), Expect = 1.6
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKG--FLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSG 123
++ +G VG I T +Y G V R +G+G+ + G
Sbjct: 74 WLIAEGTESVGYIVLTLGFSMEYGGLRGFVDDFFVRPNARGKGLGAAALQTVKQGCCDLG 133
Query: 124 AEFVLID------AKHDWHKHLGFKK 143
+L++ + GF++
Sbjct: 134 VRALLVETGPEDHPARGVYSRAGFEE 159
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: d.108.1.1
Length = 199
Score = 27.4 bits (59), Expect = 1.8
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 96 LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD------WHKHLGFKK------ 143
+ V +R GIGS+L K SG + + ++ D + GFK
Sbjct: 118 ISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTI 177
Query: 144 ---PHQHQIRYAHGG 155
+ H + GG
Sbjct: 178 SGHLYNHMQKEVEGG 192
>1y9k_A IAA acetyltransferase; structural genomics, midwest center for
structural genomics (MCSG), PSI, protein structure
initiative; 2.39A {Bacillus cereus atcc 14579} SCOP:
d.108.1.1
Length = 157
Score = 27.4 bits (60), Expect = 1.9
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
+V + G ++G + + + V + +GIG +L + K G
Sbjct: 40 YVAKQGGSVIGVYVLLETRPKTMEIMN---IAVAEHLQGKGIGKKLLRHAVETAKGYGMS 96
Query: 126 FVLID------AKHDWHKHLGFKK 143
+ + ++ ++ GF+
Sbjct: 97 KLEVGTGNSSVSQLALYQKCGFRI 120
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase,
structural genomics, PSI, protein structure initiative;
NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Length = 102
Score = 26.7 bits (59), Expect = 2.8
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 66 FVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAE 125
++ D + + I + + + GV E +G+G +L + + +
Sbjct: 14 YIGDDENNALAEITYRFV--DNNEINID-HTGVSDELGGQGVGKKLLKAVVEHARENNLK 70
Query: 126 FVLID--AKHDWHKH 138
+ AKH K
Sbjct: 71 IIASCSFAKHMLEKE 85
>2qec_A Histone acetyltransferase HPA2 and related acetyltransferases;
NP_600742.1, acetyltransferase (GNAT) family; 1.90A
{Corynebacterium glutamicum atcc 13032}
Length = 204
Score = 26.9 bits (58), Expect = 3.1
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 96 LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHD----WHKHLGFKKPHQHQIRY 151
+ S R G+GS + I +G E + ++A + LGF I
Sbjct: 131 VATSSSARGTGVGSA---LLNHGIARAGDEAIYLEATSTRAAQLYNRLGFVP--LGYIPS 185
Query: 152 AHGGGAA 158
G
Sbjct: 186 DDDGTPE 192
>3iwg_A Acetyltransferase, GNAT family; structural genomics, APC, PSI-2,
protein structure initiative; HET: MSE; 2.30A {Colwellia
psychrerythraea 34H}
Length = 276
Score = 26.1 bits (57), Expect = 4.6
Identities = 19/155 (12%), Positives = 35/155 (22%), Gaps = 17/155 (10%)
Query: 5 PNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLM 64
+ LE + A + ++ + L
Sbjct: 132 KLADRNLEMIDMQIAGTEQLTAFVTFAAANIGAPEQWLTQYYGNLIERK--------ELF 183
Query: 65 SFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSGA 124
+ + G R +Y + V R +GI ++ G
Sbjct: 184 GYWHKGKLLAAGECRLFDQYQTEYADL---GMIVAQSNRGQGIAKKVLTFLTKHAATQGL 240
Query: 125 EFVLI-----DAKHDWHKHLGFKKPHQ-HQIRYAH 153
+ A H GF H+ Q + H
Sbjct: 241 TSICSTESNNVAAQKAIAHAGFTSAHRIVQFEFKH 275
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 26.0 bits (56), Expect = 5.5
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 17 ANEQRVDQVAVDEVM-----VKAFLSTQEITDDVLHKYVRNNVEEPLSFV-RLMSFVCRD 70
E +V V+ V+ +K F T +T+D+L K E F R F RD
Sbjct: 2 VEEFKVTPWEVEGVVDYDKLIKHF-GTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRD 60
Query: 71 GDRIVGAIRA 80
D I+
Sbjct: 61 YDLILKDYEE 70
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI
1; alpha-beta protein, structural genomics, PSI; HET:
COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Length = 180
Score = 25.7 bits (55), Expect = 5.8
Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 19/157 (12%)
Query: 23 DQVAVDEVMVKAFLST-------QEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIV 75
D + ++ ++ F T + + + + +E+ LS + F I
Sbjct: 12 DLQTLQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIA 71
Query: 76 GAIRATPIQIGKYKGFLR----GPLGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDA 131
G ++ + + + + ++K G+G L + + + +
Sbjct: 72 GYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGV 131
Query: 132 KHD------WHKHLGFKKPHQHQIRYAHGGGAATDWL 162
++K +GF + H G TD +
Sbjct: 132 WEKNENAIAFYKKMGFVQTGAHSFYM--GDEEQTDLI 166
>2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A,
structural genomics, PSI-2, protein structure
initiative; HET: SUC COA; 3.20A {Bacillus subtilis}
Length = 163
Score = 26.0 bits (56), Expect = 5.9
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 96 LGVLSEYRKRGIGSRLAYMSFMAIKNSGAEFVLIDAKHDW-HKHLGFKK 143
L VL Y+ RG G L + F A K + FK
Sbjct: 88 LEVLPGYQNRGYGRAL--VEF-AKSFKMPIRTNPRMKSAEFWNKMNFKT 133
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
lipoprotein, PSI-2, protein structure initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 469
Score = 25.6 bits (55), Expect = 7.6
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 118 AIKNSGAEFVLIDAKHDWHKHLGF 141
+K +G ++ AKH GF
Sbjct: 62 TLKAAGIPAAILTAKH----ADGF 81
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 25.5 bits (55), Expect = 7.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 54 VEEPLSFVRLMSFVCRDGDRIVGA 77
+ RL V R R + A
Sbjct: 446 LLTAHENDRLGRVVLRKDGRTIAA 469
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (54), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 106 GIGSRL-AYMSFMAIKNSGAEFVLIDAKHDW-HK 137
G+G L A + F AI G E ID+K ++ H+
Sbjct: 561 GLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHR 594
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 25.2 bits (55), Expect = 8.3
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 143 KPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSLRREYD 185
KP QH ++ G D++V + + K++L
Sbjct: 191 KPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVK 233
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD;
1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 25.1 bits (54), Expect = 8.8
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 131 AKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGK 177
+ G + G AT+ VH + +++ + GK
Sbjct: 157 VDLTYITSRGNWYLKSWKGDPRKSFGVATNIGVHFY--DMLHFIFGK 201
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Neisseria meningitidis}
Length = 107
Score = 25.3 bits (55), Expect = 9.4
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 127 VLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMI 175
V + + WH H + ++ +A G A D+ M
Sbjct: 34 VKLLGDYGWHTH-----GYSDKVLFAVEGDMAVDFADGGSMTIREGEMA 77
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,632,753
Number of extensions: 74347
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 48
Length of query: 185
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 98
Effective length of database: 3,584,002
Effective search space: 351232196
Effective search space used: 351232196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)