BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780989|ref|YP_003065402.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 185
Score = 387 bits (993), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF 60
MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF
Sbjct: 1 MPKQPNVNIELEGLTFANEQRVDQVAVDEVMVKAFLSTQEITDDVLHKYVRNNVEEPLSF 60
Query: 61 VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK 120
VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK
Sbjct: 61 VRLMSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIK 120
Query: 121 NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL 180
NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL
Sbjct: 121 NSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIGKMSL 180
Query: 181 RREYD 185
RREYD
Sbjct: 181 RREYD 185
>gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 49
Score = 80.9 bits (198), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 46/68 (67%), Gaps = 20/68 (29%)
Query: 117 MAIKNSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIG 176
MAIKNSGAEFVLIDAK D +KHLGFKKP IFKNNIMENMIG
Sbjct: 1 MAIKNSGAEFVLIDAKSDGYKHLGFKKP--------------------IFKNNIMENMIG 40
Query: 177 KMSLRREY 184
+MSLRREY
Sbjct: 41 RMSLRREY 48
>gi|254781162|ref|YP_003065575.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 192
Score = 64.7 bits (156), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 64 MSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSG 123
+SF+C +G RIVG++R TPI I K G L GP+ V Y+ +GIG +L MS A + G
Sbjct: 74 LSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
Query: 124 AEFVLIDAKHDWHKHLGFK 142
++ +++ ++ LGF+
Sbjct: 134 SQVIVLVGDIAYYSKLGFQ 152
>gi|254781155|ref|YP_003065568.1| hypothetical protein CLIBASIA_05310 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 35
Score = 52.4 bits (124), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 139 LGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIME 172
+GFKKP+Q+QI +A GG T WLVHIFK N+ME
Sbjct: 1 MGFKKPYQNQIEHAQGGRKTTAWLVHIFKKNLME 34
>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 271
Score = 22.7 bits (47), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 1 MPKQPNVNIELEGLTFANEQRVDQVAV 27
+ K N +L+G++FA ++ +D V V
Sbjct: 128 ISKATNKEQDLQGISFAEKKSIDTVVV 154
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 21.9 bits (45), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 18 NEQRVDQVAVDEVM 31
NE RVDQ+ DE++
Sbjct: 310 NEVRVDQLTKDEIL 323
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 21.9 bits (45), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 146 QHQIRYAHGGGAATDWL 162
H+I H G A DW+
Sbjct: 37 SHKIGEVHDGSATMDWM 53
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 21.9 bits (45), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 21 RVDQVAVD----EVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSFVCRDGDRIVG 76
R++ VA++ EV+V+ L EITD +Y+ + + + L + + G ++V
Sbjct: 1237 RLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVS 1296
Query: 77 AIRATPIQIGKYKGFLR 93
+PI G K L+
Sbjct: 1297 ---FSPILQGITKASLQ 1310
>gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 230
Score = 21.6 bits (44), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 125 EFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENM 174
E+ + + D + L ++ ++ + GGG+ ++ I +NN+ E++
Sbjct: 100 EWFMYQMEQDVTRPLAHERVYKLHMTTEQGGGSPDSKVLRIARNNMREHI 149
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,687
Number of Sequences: 1233
Number of extensions: 4734
Number of successful extensions: 16
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)