Query gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 19:56:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780990.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1wxr_A Haemoglobin protease; 8.1 1.5E+02 0.0043 13.8 1.0 22 16-37 111-132 (145) 2 >2iz3_A Beta-microseminoprotei 6.4 1.7E+02 0.0049 13.5 0.6 17 45-61 24-40 (56) 3 >3pvi_A Protein (pvuii endonuc 6.2 1.7E+02 0.005 13.5 0.5 16 51-66 39-54 (106) 4 >3cam_A Cold-shock domain fami 6.0 99 0.0029 14.6 -0.7 12 2-13 17-28 (39) 5 >3epr_A Hydrolase, haloacid de 5.9 1.7E+02 0.0051 13.4 0.4 49 2-50 18-66 (110) 6 >3do5_A HOM, homoserine dehydr 5.0 2.9E+02 0.0085 12.2 3.1 61 4-66 84-144 (157) 7 >3h09_A IGA1 protease, immunog 4.9 2.8E+02 0.0084 12.3 1.0 21 16-36 94-114 (128) 8 >1ywk_A 4-deoxy-L-threo-5-hexo 4.6 3.1E+02 0.0091 12.1 1.3 14 24-37 86-99 (140) 9 >3bpo_A Interleukin 13; IL4, I 4.6 1.2E+02 0.0036 14.2 -1.0 43 8-50 9-53 (127) 10 >1bml_C Streptokinase; human p 4.2 3.3E+02 0.0099 11.9 1.2 18 24-41 24-41 (88) No 1 >>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} (A:1-23,A:123-244) Probab=8.14 E-value=1.5e+02 Score=13.75 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=17.9 Q ss_pred HHHHHCCCCCEEEEEEECCCEE Q ss_conf 5454138952189865022213 Q gi|254780990|r 16 DLFQYDANKSELVLISSLWSID 37 (66) Q Consensus 16 dlfqydankselvlisslwsid 37 (66) -||-||+.|-.-||+.+++.-. T Consensus 111 PLF~YD~~kkKWvl~GVl~~g~ 132 (145) T 1wxr_A 111 PLFAFDTVQNKWVLVGVLTAGN 132 (145) T ss_dssp EEEEEETTTTEEEEEEEEEEES T ss_pred CCEEEECCCCEEEEEEEEECCC T ss_conf 4538977886399999861233 No 2 >>2iz3_A Beta-microseminoprotein; polymorphism, alternative splicing, inhibitor; NMR {Homo sapiens} (A:1-56) Probab=6.37 E-value=1.7e+02 Score=13.49 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=12.6 Q ss_pred HHHHCCCCCCCCCCCCE Q ss_conf 22100765200024634 Q gi|254780990|r 45 LLRRRHPINKYEKTDNF 61 (66) Q Consensus 45 llrrrhpinkyektdnf 61 (66) |-...||+|.+=||+|- T Consensus 24 l~G~kH~lNs~WkTenC 40 (56) T 2iz3_A 24 LKGNKHPINSEWQTDNC 40 (56) T ss_dssp TTSCBCCTTCEEEETTT T ss_pred CCCEEEECCCEECCCCC T ss_conf 89909228898888997 No 3 >>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA; HET: DNA; 1.59A {Proteus vulgaris} (A:52-157) Probab=6.21 E-value=1.7e+02 Score=13.45 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.4 Q ss_pred CCCCCCCCCCEEEEEC Q ss_conf 6520002463465429 Q gi|254780990|r 51 PINKYEKTDNFFALYT 66 (66) Q Consensus 51 pinkyektdnffalyt 66 (66) -|.||.+.+-.||.|. T Consensus 39 Ii~KYR~V~WiFAvy~ 54 (106) T 3pvi_A 39 IIAKYRQVPWIFAIYR 54 (106) T ss_dssp HHHHHHTSCEEEEEEE T ss_pred HHHHHHCCCEEEEEEC T ss_conf 9998735886876425 No 4 >>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} (A:1-39) Probab=6.04 E-value=99 Score=14.62 Aligned_cols=12 Identities=58% Similarity=1.257 Sum_probs=8.1 Q ss_pred EECCCCCHHHHH Q ss_conf 334564345677 Q gi|254780990|r 2 FLVPDDGIDDLF 13 (66) Q Consensus 2 flvpddgiddlf 13 (66) |+.|+||-.|.| T Consensus 17 FI~~~dg~~DvF 28 (39) T 3cam_A 17 FITPDEGGEDLF 28 (39) T ss_dssp EEEETTSCCCEE T ss_pred EEEECCCCCEEE T ss_conf 998679982799 No 5 >>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:74-183) Probab=5.85 E-value=1.7e+02 Score=13.39 Aligned_cols=49 Identities=12% Similarity=0.407 Sum_probs=38.8 Q ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEHHHHHCC Q ss_conf 3345643456777554541389521898650222134544105221007 Q gi|254780990|r 2 FLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRH 50 (66) Q Consensus 2 flvpddgiddlfeedlfqydankselvlisslwsidffeincallrrrh 50 (66) |++-.+|+.+.+++.-++.+....+.|++..-.++++-.++.|..-.++ T Consensus 18 ~vlg~~~~~~~l~~~g~~~~~~~~~aVvvg~~~~~~y~~l~~a~~~~~~ 66 (110) T 3epr_A 18 YVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQN 66 (110) T ss_dssp EEESCHHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHT T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 9824447788898649753566887899803223467889999887645 No 6 >>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural genomics, joint center for structural genomics; 2.20A {Archaeoglobus fulgidus} (A:150-306) Probab=4.97 E-value=2.9e+02 Score=12.25 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=43.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEHHHHHCCCCCCCCCCCCEEEEEC Q ss_conf 456434567775545413895218986502221345441052210076520002463465429 Q gi|254780990|r 4 VPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRHPINKYEKTDNFFALYT 66 (66) Q Consensus 4 vpddgiddlfeedlfqydankselvlisslwsidffeincallrrrhpinkyektdnffalyt 66 (66) ||-.||+.+..+|+-.-.....-+-++.+.+.... .+.-.++...||++- +-.+|-+.+|| T Consensus 84 v~~~gI~~~~~~di~~A~~~g~~lrlv~~~~~~~~-~V~p~~v~~~~pLav-~g~~N~v~i~t 144 (157) T 3do5_A 84 VEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKL-KVSPRLVPFHHPLAI-KGTXNAAXFKT 144 (157) T ss_dssp SEECCSTTCCHHHHHHHHTTTEEEEEEEEESSSCE-EEEEEEEETTSGGGC-CSSCEEEEEEE T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHEEHHHEECCEE-EEEEEEECCCCCEEE-CCCCEEEEEEE T ss_conf 23356334568888776421134201513227559-999999889997048-89854999982 No 7 >>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, membrane, secreted, transmembrane, virulence, zymogen; 1.75A {Haemophilus influenzae} (A:8-23,A:155-181,A:216-300) Probab=4.87 E-value=2.8e+02 Score=12.30 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.4 Q ss_pred HHHHHCCCCCEEEEEEECCCE Q ss_conf 545413895218986502221 Q gi|254780990|r 16 DLFQYDANKSELVLISSLWSI 36 (66) Q Consensus 16 dlfqydankselvlisslwsi 36 (66) -||-||+.+..-||+..+-.. T Consensus 94 PLFaYD~~~kKWVl~GVl~~~ 114 (128) T 3h09_A 94 PLFVYDREKGKWLFLGSYDFW 114 (128) T ss_dssp EEEEEETTTTEEEEEEEEEEE T ss_pred CCEEEECCCCEEEEEEEECCC T ss_conf 338977577649999644254 No 8 >>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} (A:150-289) Probab=4.62 E-value=3.1e+02 Score=12.11 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=10.3 Q ss_pred CCEEEEEEECCCEE Q ss_conf 52189865022213 Q gi|254780990|r 24 KSELVLISSLWSID 37 (66) Q Consensus 24 kselvlisslwsid 37 (66) +.|-..||.-|||. T Consensus 86 ~neqAViSP~WSIH 99 (140) T 1ywk_A 86 SNEQAAISPSWSIH 99 (140) T ss_dssp CTTEEEEECTTSCC T ss_pred ECCCEEECCCCCCC T ss_conf 38827988872012 No 9 >>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, alternative splicing, glycoprotein, immune response, membrane; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 1ga3_A (A:) Probab=4.55 E-value=1.2e+02 Score=14.15 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=27.6 Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE--EEEHHHHHCC Q ss_conf 345677755454138952189865022213454--4105221007 Q gi|254780990|r 8 GIDDLFEEDLFQYDANKSELVLISSLWSIDFFE--INCALLRRRH 50 (66) Q Consensus 8 giddlfeedlfqydankselvlisslwsidffe--incallrrrh 50 (66) ....|.||-.---..+|..|.--|-.||+++-+ .-||.|.--- T Consensus 9 aLkELIeeL~nItqnqkapLCNGSMVWSVnlt~a~~yCaALeSL~ 53 (127) T 3bpo_A 9 ALRELIEELVNITQNQKAPLCNGSMVWSINLTTAGMYCAALESLI 53 (127) T ss_dssp HHHHHHHHHHHHCC---CCSGGGCCEECCC---CCCSHHHHHTTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 999999999850655657765773688985155503799999865 No 10 >>1bml_C Streptokinase; human plasmin; 2.90A {Streptococcus equisimilis} (C:275-362) Probab=4.19 E-value=3.3e+02 Score=11.93 Aligned_cols=18 Identities=39% Similarity=0.542 Sum_probs=14.7 Q ss_pred CCEEEEEEECCCEEEEEE Q ss_conf 521898650222134544 Q gi|254780990|r 24 KSELVLISSLWSIDFFEI 41 (66) Q Consensus 24 kselvlisslwsidffei 41 (66) +||-.++.|+-+|||-.. T Consensus 24 ~~~~ll~~g~~~idF~Dg 41 (88) T 1bml_C 24 KSEQLLTASERNLDFRDL 41 (88) T ss_dssp EEEEEEESCGGGCSBCCS T ss_pred HHHEEEECCCCCCCCCCC T ss_conf 340233023343210014 Done!