Query         gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 19:56:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780990.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1wxr_A Haemoglobin protease;    8.1 1.5E+02  0.0043   13.8   1.0   22   16-37    111-132 (145)
  2 >2iz3_A Beta-microseminoprotei   6.4 1.7E+02  0.0049   13.5   0.6   17   45-61     24-40  (56)
  3 >3pvi_A Protein (pvuii endonuc   6.2 1.7E+02   0.005   13.5   0.5   16   51-66     39-54  (106)
  4 >3cam_A Cold-shock domain fami   6.0      99  0.0029   14.6  -0.7   12    2-13     17-28  (39)
  5 >3epr_A Hydrolase, haloacid de   5.9 1.7E+02  0.0051   13.4   0.4   49    2-50     18-66  (110)
  6 >3do5_A HOM, homoserine dehydr   5.0 2.9E+02  0.0085   12.2   3.1   61    4-66     84-144 (157)
  7 >3h09_A IGA1 protease, immunog   4.9 2.8E+02  0.0084   12.3   1.0   21   16-36     94-114 (128)
  8 >1ywk_A 4-deoxy-L-threo-5-hexo   4.6 3.1E+02  0.0091   12.1   1.3   14   24-37     86-99  (140)
  9 >3bpo_A Interleukin 13; IL4, I   4.6 1.2E+02  0.0036   14.2  -1.0   43    8-50      9-53  (127)
 10 >1bml_C Streptokinase; human p   4.2 3.3E+02  0.0099   11.9   1.2   18   24-41     24-41  (88)

No 1  
>>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} (A:1-23,A:123-244)
Probab=8.14  E-value=1.5e+02  Score=13.75  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=17.9

Q ss_pred             HHHHHCCCCCEEEEEEECCCEE
Q ss_conf             5454138952189865022213
Q gi|254780990|r   16 DLFQYDANKSELVLISSLWSID   37 (66)
Q Consensus        16 dlfqydankselvlisslwsid   37 (66)
                      -||-||+.|-.-||+.+++.-.
T Consensus       111 PLF~YD~~kkKWvl~GVl~~g~  132 (145)
T 1wxr_A          111 PLFAFDTVQNKWVLVGVLTAGN  132 (145)
T ss_dssp             EEEEEETTTTEEEEEEEEEEES
T ss_pred             CCEEEECCCCEEEEEEEEECCC
T ss_conf             4538977886399999861233


No 2  
>>2iz3_A Beta-microseminoprotein; polymorphism, alternative splicing, inhibitor; NMR {Homo sapiens} (A:1-56)
Probab=6.37  E-value=1.7e+02  Score=13.49  Aligned_cols=17  Identities=47%  Similarity=0.591  Sum_probs=12.6

Q ss_pred             HHHHCCCCCCCCCCCCE
Q ss_conf             22100765200024634
Q gi|254780990|r   45 LLRRRHPINKYEKTDNF   61 (66)
Q Consensus        45 llrrrhpinkyektdnf   61 (66)
                      |-...||+|.+=||+|-
T Consensus        24 l~G~kH~lNs~WkTenC   40 (56)
T 2iz3_A           24 LKGNKHPINSEWQTDNC   40 (56)
T ss_dssp             TTSCBCCTTCEEEETTT
T ss_pred             CCCEEEECCCEECCCCC
T ss_conf             89909228898888997


No 3  
>>3pvi_A Protein (pvuii endonuclease); complex (restriction endonuclease/DNA), mutant, protein/DNA; HET: DNA; 1.59A {Proteus vulgaris} (A:52-157)
Probab=6.21  E-value=1.7e+02  Score=13.45  Aligned_cols=16  Identities=38%  Similarity=0.636  Sum_probs=13.4

Q ss_pred             CCCCCCCCCCEEEEEC
Q ss_conf             6520002463465429
Q gi|254780990|r   51 PINKYEKTDNFFALYT   66 (66)
Q Consensus        51 pinkyektdnffalyt   66 (66)
                      -|.||.+.+-.||.|.
T Consensus        39 Ii~KYR~V~WiFAvy~   54 (106)
T 3pvi_A           39 IIAKYRQVPWIFAIYR   54 (106)
T ss_dssp             HHHHHHTSCEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEC
T ss_conf             9998735886876425


No 4  
>>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58} (A:1-39)
Probab=6.04  E-value=99  Score=14.62  Aligned_cols=12  Identities=58%  Similarity=1.257  Sum_probs=8.1

Q ss_pred             EECCCCCHHHHH
Q ss_conf             334564345677
Q gi|254780990|r    2 FLVPDDGIDDLF   13 (66)
Q Consensus         2 flvpddgiddlf   13 (66)
                      |+.|+||-.|.|
T Consensus        17 FI~~~dg~~DvF   28 (39)
T 3cam_A           17 FITPDEGGEDLF   28 (39)
T ss_dssp             EEEETTSCCCEE
T ss_pred             EEEECCCCCEEE
T ss_conf             998679982799


No 5  
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:74-183)
Probab=5.85  E-value=1.7e+02  Score=13.39  Aligned_cols=49  Identities=12%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             EECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEHHHHHCC
Q ss_conf             3345643456777554541389521898650222134544105221007
Q gi|254780990|r    2 FLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRH   50 (66)
Q Consensus         2 flvpddgiddlfeedlfqydankselvlisslwsidffeincallrrrh   50 (66)
                      |++-.+|+.+.+++.-++.+....+.|++..-.++++-.++.|..-.++
T Consensus        18 ~vlg~~~~~~~l~~~g~~~~~~~~~aVvvg~~~~~~y~~l~~a~~~~~~   66 (110)
T 3epr_A           18 YVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQN   66 (110)
T ss_dssp             EEESCHHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9824447788898649753566887899803223467889999887645


No 6  
>>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural genomics, joint center for structural genomics; 2.20A {Archaeoglobus fulgidus} (A:150-306)
Probab=4.97  E-value=2.9e+02  Score=12.25  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf             456434567775545413895218986502221345441052210076520002463465429
Q gi|254780990|r    4 VPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEINCALLRRRHPINKYEKTDNFFALYT   66 (66)
Q Consensus         4 vpddgiddlfeedlfqydankselvlisslwsidffeincallrrrhpinkyektdnffalyt   66 (66)
                      ||-.||+.+..+|+-.-.....-+-++.+.+.... .+.-.++...||++- +-.+|-+.+||
T Consensus        84 v~~~gI~~~~~~di~~A~~~g~~lrlv~~~~~~~~-~V~p~~v~~~~pLav-~g~~N~v~i~t  144 (157)
T 3do5_A           84 VEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKL-KVSPRLVPFHHPLAI-KGTXNAAXFKT  144 (157)
T ss_dssp             SEECCSTTCCHHHHHHHHTTTEEEEEEEEESSSCE-EEEEEEEETTSGGGC-CSSCEEEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHEEHHHEECCEE-EEEEEEECCCCCEEE-CCCCEEEEEEE
T ss_conf             23356334568888776421134201513227559-999999889997048-89854999982


No 7  
>>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, membrane, secreted, transmembrane, virulence, zymogen; 1.75A {Haemophilus influenzae} (A:8-23,A:155-181,A:216-300)
Probab=4.87  E-value=2.8e+02  Score=12.30  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=16.4

Q ss_pred             HHHHHCCCCCEEEEEEECCCE
Q ss_conf             545413895218986502221
Q gi|254780990|r   16 DLFQYDANKSELVLISSLWSI   36 (66)
Q Consensus        16 dlfqydankselvlisslwsi   36 (66)
                      -||-||+.+..-||+..+-..
T Consensus        94 PLFaYD~~~kKWVl~GVl~~~  114 (128)
T 3h09_A           94 PLFVYDREKGKWLFLGSYDFW  114 (128)
T ss_dssp             EEEEEETTTTEEEEEEEEEEE
T ss_pred             CCEEEECCCCEEEEEEEECCC
T ss_conf             338977577649999644254


No 8  
>>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} (A:150-289)
Probab=4.62  E-value=3.1e+02  Score=12.11  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=10.3

Q ss_pred             CCEEEEEEECCCEE
Q ss_conf             52189865022213
Q gi|254780990|r   24 KSELVLISSLWSID   37 (66)
Q Consensus        24 kselvlisslwsid   37 (66)
                      +.|-..||.-|||.
T Consensus        86 ~neqAViSP~WSIH   99 (140)
T 1ywk_A           86 SNEQAAISPSWSIH   99 (140)
T ss_dssp             CTTEEEEECTTSCC
T ss_pred             ECCCEEECCCCCCC
T ss_conf             38827988872012


No 9  
>>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, alternative splicing, glycoprotein, immune response, membrane; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 1ga3_A (A:)
Probab=4.55  E-value=1.2e+02  Score=14.15  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEE--EEEHHHHHCC
Q ss_conf             345677755454138952189865022213454--4105221007
Q gi|254780990|r    8 GIDDLFEEDLFQYDANKSELVLISSLWSIDFFE--INCALLRRRH   50 (66)
Q Consensus         8 giddlfeedlfqydankselvlisslwsidffe--incallrrrh   50 (66)
                      ....|.||-.---..+|..|.--|-.||+++-+  .-||.|.---
T Consensus         9 aLkELIeeL~nItqnqkapLCNGSMVWSVnlt~a~~yCaALeSL~   53 (127)
T 3bpo_A            9 ALRELIEELVNITQNQKAPLCNGSMVWSINLTTAGMYCAALESLI   53 (127)
T ss_dssp             HHHHHHHHHHHHCC---CCSGGGCCEECCC---CCCSHHHHHTTT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             999999999850655657765773688985155503799999865


No 10 
>>1bml_C Streptokinase; human plasmin; 2.90A {Streptococcus equisimilis} (C:275-362)
Probab=4.19  E-value=3.3e+02  Score=11.93  Aligned_cols=18  Identities=39%  Similarity=0.542  Sum_probs=14.7

Q ss_pred             CCEEEEEEECCCEEEEEE
Q ss_conf             521898650222134544
Q gi|254780990|r   24 KSELVLISSLWSIDFFEI   41 (66)
Q Consensus        24 kselvlisslwsidffei   41 (66)
                      +||-.++.|+-+|||-..
T Consensus        24 ~~~~ll~~g~~~idF~Dg   41 (88)
T 1bml_C           24 KSEQLLTASERNLDFRDL   41 (88)
T ss_dssp             EEEEEEESCGGGCSBCCS
T ss_pred             HHHEEEECCCCCCCCCCC
T ss_conf             340233023343210014


Done!