Query gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:59:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780990.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1np3a2 c.2.1.6 (A:1-182) Clas 12.1 53 0.0039 14.0 2.0 40 1-41 77-116 (182) 2 d3pvia_ c.52.1.6 (A:) Restrict 10.4 35 0.0025 14.9 0.5 16 51-66 89-104 (156) 3 d2akja1 d.58.36.1 (A:346-430) 5.9 76 0.0055 13.2 0.6 18 4-21 64-81 (85) 4 d2ct5a1 g.37.1.6 (A:8-67) Zinc 5.5 47 0.0034 14.3 -0.6 13 44-56 43-55 (60) 5 d1ulqa2 c.95.1.1 (A:276-400) B 5.0 92 0.0067 12.8 0.6 13 33-45 38-50 (125) 6 d1m3ka2 c.95.1.1 (A:269-392) B 4.8 1.1E+02 0.008 12.4 0.9 13 33-45 39-51 (124) 7 d1afwa2 c.95.1.1 (A:294-417) T 4.4 1.2E+02 0.0088 12.2 0.9 12 34-45 42-53 (124) 8 d1b64a_ d.58.12.1 (A:) Guanine 4.4 1.3E+02 0.0095 12.0 1.1 18 1-19 56-75 (91) 9 d1r4ga_ a.8.5.1 (A:) RNA polym 4.3 1.3E+02 0.0091 12.1 0.8 10 9-18 40-49 (53) 10 d1wdkc2 c.95.1.1 (C:264-391) F 3.9 1.4E+02 0.01 11.8 1.0 13 33-45 40-52 (128) No 1 >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Probab=12.10 E-value=53 Score=14.01 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=28.6 Q ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEE Q ss_conf 93345643456777554541389521898650222134544 Q gi|254780990|r 1 MFLVPDDGIDDLFEEDLFQYDANKSELVLISSLWSIDFFEI 41 (66) Q Consensus 1 mflvpddgiddlfeedlfqydankselvlisslwsidffei 41 (66) |+|+||...-+++++....+-..-+-|. .+.=.+|.|-.| T Consensus 77 m~L~PD~~q~~vy~~~I~p~lk~g~~L~-FaHGfnIh~~~I 116 (182) T d1np3a2 77 MILTPDEFQGRLYKEEIEPNLKKGATLA-FAHGFSIHYNQV 116 (182) T ss_dssp EECSCHHHHHHHHHHHTGGGCCTTCEEE-ESCCHHHHTTSS T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCEEE-EECCCEEEEEEE T ss_conf 0104067778999876665258786798-704424876236 No 2 >d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]} Probab=10.35 E-value=35 Score=14.95 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.6 Q ss_pred CCCCCCCCCCEEEEEC Q ss_conf 6520002463465429 Q gi|254780990|r 51 PINKYEKTDNFFALYT 66 (66) Q Consensus 51 pinkyektdnffalyt 66 (66) -|.||.|.|-+||.|. T Consensus 89 II~KYRqVdW~FA~y~ 104 (156) T d3pvia_ 89 IIAKYRQVPWIFAIYR 104 (156) T ss_dssp HHHHHHTSCEEEEEEE T ss_pred HHHHHHCCCEEEEEEC T ss_conf 9998735786876425 No 3 >d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=5.91 E-value=76 Score=13.21 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=12.2 Q ss_pred CCCCCHHHHHHHHHHHHC Q ss_conf 456434567775545413 Q gi|254780990|r 4 VPDDGIDDLFEEDLFQYD 21 (66) Q Consensus 4 vpddgiddlfeedlfqyd 21 (66) ||.+.++++++|.+++.. T Consensus 64 i~~~~l~~l~~E~ll~~~ 81 (85) T d2akja1 64 VENSKIDSLLNEPLLKER 81 (85) T ss_dssp EETTTHHHHTTSHHHHTT T ss_pred CCHHHHHHHHHHHHHCCC T ss_conf 998899999985875026 No 4 >d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.49 E-value=47 Score=14.28 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=8.6 Q ss_pred HHHHHCCCCCCCC Q ss_conf 5221007652000 Q gi|254780990|r 44 ALLRRRHPINKYE 56 (66) Q Consensus 44 allrrrhpinkye 56 (66) +-||+|||...-| T Consensus 43 ~HL~~rHp~ef~~ 55 (60) T d2ct5a1 43 YHLEKNHPEEFCE 55 (60) T ss_dssp HHHHHSCHHHHHH T ss_pred HHHHHCCHHHHHH T ss_conf 9988509799998 No 5 >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Probab=4.99 E-value=92 Score=12.80 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.6 Q ss_pred CCCEEEEEEEEHH Q ss_conf 2221345441052 Q gi|254780990|r 33 LWSIDFFEINCAL 45 (66) Q Consensus 33 lwsidffeincal 45 (66) +=.||+||||-|. T Consensus 38 ~~Did~~EinEAF 50 (125) T d1ulqa2 38 FSDLGLIELNEAF 50 (125) T ss_dssp GGGCSEEEECCSB T ss_pred CCCCCHHEECCCC T ss_conf 3434210001243 No 6 >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Probab=4.77 E-value=1.1e+02 Score=12.38 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=9.4 Q ss_pred CCCEEEEEEEEHH Q ss_conf 2221345441052 Q gi|254780990|r 33 LWSIDFFEINCAL 45 (66) Q Consensus 33 lwsidffeincal 45 (66) +-.||.||||-|. T Consensus 39 ~~Did~~EinEAF 51 (124) T d1m3ka2 39 IGDLDLVEANEAF 51 (124) T ss_dssp GGGCSEEEECCSB T ss_pred HHCCCHHHHCCCC T ss_conf 3006577751210 No 7 >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.43 E-value=1.2e+02 Score=12.18 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=8.9 Q ss_pred CCEEEEEEEEHH Q ss_conf 221345441052 Q gi|254780990|r 34 WSIDFFEINCAL 45 (66) Q Consensus 34 wsidffeincal 45 (66) -.||+||||-|. T Consensus 42 ~Did~~EinEAF 53 (124) T d1afwa2 42 QDIDIFEINEAF 53 (124) T ss_dssp GGCSEEEECCSB T ss_pred CCCCEEEECCCH T ss_conf 657489843630 No 8 >d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Probab=4.38 E-value=1.3e+02 Score=12.01 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=8.8 Q ss_pred CEECCCC--CHHHHHHHHHHH Q ss_conf 9334564--345677755454 Q gi|254780990|r 1 MFLVPDD--GIDDLFEEDLFQ 19 (66) Q Consensus 1 mflvpdd--giddlfeedlfq 19 (66) ++.+||| +.|++ ||.+.+ T Consensus 56 ~~vveDd~~~~D~l-ee~i~~ 75 (91) T d1b64a_ 56 QCVVEDDKVGTDML-EEQITA 75 (91) T ss_dssp EEEECTTSSCHHHH-HHHHTT T ss_pred EEEEEECCCCHHHH-HHHHHH T ss_conf 99999487586999-999886 No 9 >d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]} Probab=4.25 E-value=1.3e+02 Score=12.10 Aligned_cols=10 Identities=40% Similarity=0.590 Sum_probs=6.3 Q ss_pred HHHHHHHHHH Q ss_conf 4567775545 Q gi|254780990|r 9 IDDLFEEDLF 18 (66) Q Consensus 9 iddlfeedlf 18 (66) .-|+||||.- T Consensus 40 vMdlf~EDi~ 49 (53) T d1r4ga_ 40 VMELVEEDIE 49 (53) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999998888 No 10 >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Probab=3.89 E-value=1.4e+02 Score=11.80 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=9.1 Q ss_pred CCCEEEEEEEEHH Q ss_conf 2221345441052 Q gi|254780990|r 33 LWSIDFFEINCAL 45 (66) Q Consensus 33 lwsidffeincal 45 (66) +=.||+||||-|. T Consensus 40 ~~did~~EinEAF 52 (128) T d1wdkc2 40 MADIDFIELNEAF 52 (128) T ss_dssp GGGCCEEEECCSB T ss_pred CCCCCEEEEECCC T ss_conf 2445167750132 Done!