RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780990|ref|YP_003065403.1| hypothetical protein
CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>gnl|CDD|147962 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodiesterase.
           Covalent intermediates between topoisomerase I and DNA
           can become dead-end complexes that lead to cell death.
           Tyrosyl-DNA phosphodiesterase can hydrolyse the bond
           between topoisomerase I and DNA.
          Length = 433

 Score = 26.2 bits (58), Expect = 2.0
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 13  FEEDLFQY----DANKSELVLISSLWSIDFFEINCAL 45
           F+ DL +Y     A      LI  L   DF  +N  L
Sbjct: 155 FKRDLLEYLSEYGAKTLLEPLIDRLRKYDFSSVNVEL 191


>gnl|CDD|165447 PHA03176, PHA03176, UL43 envelope protein; Provisional.
          Length = 420

 Score = 24.1 bits (52), Expect = 7.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 2   FLVPDDGIDDLFEEDLFQYDANKSELVLI 30
             +P    D  +EED+  +D  K  +  I
Sbjct: 254 RTIPSPDADATYEEDVSSFDTAKGHIPSI 282


>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
          Length = 587

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 4   VPDDGIDDLFEEDLFQ 19
           VP+  ++ L  E L Q
Sbjct: 440 VPNSKVEALLAEPLLQ 455


>gnl|CDD|149329 pfam08206, OB_RNB, Ribonuclease B OB domain.  This family
          includes the N-terminal OB domain found in ribonuclease
          B proteins in one or two copies.
          Length = 58

 Score = 24.0 bits (53), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 2  FLVPDDGIDDLF 13
          FL+PDD  DD+F
Sbjct: 12 FLIPDDEEDDIF 23


>gnl|CDD|134328 PRK00587, PRK00587, hypothetical protein; Provisional.
          Length = 99

 Score = 24.1 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 FEEDLFQYDANKSELVLISSLWSIDFFEINCALL 46
          FEE  F +D  K  L+ I    +I+  EIN  L+
Sbjct: 24 FEEKEFDFDYKKYILIKIKGNLNIEKIEINKELI 57


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,139,730
Number of extensions: 53857
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 5,994,473
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,194,977
Effective search space: 150654333
Effective search space used: 150654333
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)