HHsearch alignment for GI: 254780991 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.97 E-value=3.4e-28 Score=229.72 Aligned_cols=117 Identities=26% Similarity=0.438 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r 584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG 663 (805)
Q Consensus 584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~ 663 (805)
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~VinyD----- 349 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYD----- 349 (513)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECC-----
T ss_conf 399995767769999999997896599973889988999999999759989899806544689966674799787-----
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 44460137766543127-998669998248988999999987888
Q gi|254780991|r 664 FLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRR 707 (805)
Q Consensus 664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rr 707 (805)
T Consensus 350 ~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~--~e~~~l~~i~~~ 392 (513)
T COG0513 350 LPLDPEDYVHRIGRTGRAGRKGVAISFVTEE--EEVKKLKRIEKR 392 (513)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCH--HHHHHHHHHHHH
T ss_conf 9998041317345343489987279985562--349999999998