HHsearch alignment for GI: 254780991 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.97  E-value=3.4e-28  Score=229.72  Aligned_cols=117  Identities=26%  Similarity=0.438  Sum_probs=105.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf             12466214789999999986359668732576457899999999731898699984587535787771179996288567
Q gi|254780991|r  584 RILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEG  663 (805)
Q Consensus       584 R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~  663 (805)
T Consensus       275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~VinyD-----  349 (513)
T COG0513         275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYD-----  349 (513)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECC-----
T ss_conf             399995767769999999997896599973889988999999999759989899806544689966674799787-----


Q ss_pred             CCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             44460137766543127-998669998248988999999987888
Q gi|254780991|r  664 FLRSKTSLIQTIGRAAR-NVNSKVILYADTITKSIQLAIDETTRR  707 (805)
Q Consensus       664 f~~~~~~~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~e~~rr  707 (805)
T Consensus       350 ~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~--~e~~~l~~i~~~  392 (513)
T COG0513         350 LPLDPEDYVHRIGRTGRAGRKGVAISFVTEE--EEVKKLKRIEKR  392 (513)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEECCH--HHHHHHHHHHHH
T ss_conf             9998041317345343489987279985562--349999999998