HHsearch alignment for GI: 254780991 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=93.62  E-value=0.57  Score=25.77  Aligned_cols=160  Identities=20%  Similarity=0.130  Sum_probs=96.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHCC------CC-EEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf             8888438999999998873973379986337646999999-999719------97-899931634689999999986789
Q gi|254780991|r  148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK-VIEAMQ------RP-AIVMAPNKILAAQLYSEFKNFFPH  219 (805)
Q Consensus       148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~-lI~~~g------r~-aLvLvPei~La~QL~~rfk~~Fp~  219 (805)
T Consensus        51 ~pt~IQ~~~iP~~l~g-----~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~  125 (513)
T COG0513          51 EPTPIQLAAIPLILAG-----RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN  125 (513)
T ss_pred             CCCHHHHHHCHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             9898999658776369-----99799868987178999999999974004557775699779999999999999999862


Q ss_pred             C---EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC---CC-CCHHHHHC
Q ss_conf             8---38998621344442101555432102210358899999999999985499849982778961---68-98347722
Q gi|254780991|r  220 N---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY---GI-GSVESYSQ  292 (805)
Q Consensus       220 n---~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf---gl-~~P~~~lg  292 (805)
T Consensus       126 ~~~~~~~~i~GG~~--------------------~~~q-------~-~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~  176 (513)
T COG0513         126 LGGLRVAVVYGGVS--------------------IRKQ-------I-EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVE  176 (513)
T ss_pred             CCCCEEEEEECCCC--------------------HHHH-------H-HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEE
T ss_conf             45842999989989--------------------8999-------9-987249-98999796089999864885546501


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHCC
Q ss_conf             57999419811178753234311765633877545331-8724783178887788873104
Q gi|254780991|r  293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR-VCGDSIEIFPSHLEDVAWRVSM  352 (805)
Q Consensus       293 lIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~-~rg~ILdsatps~Es~~~Rie~  352 (805)
T Consensus       177 ~lVlDEADrml----------d~gf~~-~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~  226 (513)
T COG0513         177 TLVLDEADRML----------DMGFID-DIEKILKALPPDRQTLLFSATMPDDIRELARRY  226 (513)
T ss_pred             EEEECCHHHHC----------CCCCHH-HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf             89967617663----------887689-999999738977489999824898999999997