HHsearch alignment for GI: 254780991 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=93.62 E-value=0.57 Score=25.77 Aligned_cols=160 Identities=20% Similarity=0.130 Sum_probs=96.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHCC------CC-EEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 8888438999999998873973379986337646999999-999719------97-899931634689999999986789
Q gi|254780991|r 148 HPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK-VIEAMQ------RP-AIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 148 ~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~-lI~~~g------r~-aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
T Consensus 51 ~pt~IQ~~~iP~~l~g-----~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 51 EPTPIQLAAIPLILAG-----RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCHHHHHHCHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 9898999658776369-----99799868987178999999999974004557775699779999999999999999862
Q ss_pred C---EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC---CC-CCHHHHHC
Q ss_conf 8---38998621344442101555432102210358899999999999985499849982778961---68-98347722
Q gi|254780991|r 220 N---AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY---GI-GSVESYSQ 292 (805)
Q Consensus 220 n---~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf---gl-~~P~~~lg 292 (805)
T Consensus 126 ~~~~~~~~i~GG~~--------------------~~~q-------~-~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 126 LGGLRVAVVYGGVS--------------------IRKQ-------I-EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred CCCCEEEEEECCCC--------------------HHHH-------H-HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEE
T ss_conf 45842999989989--------------------8999-------9-987249-98999796089999864885546501
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHCC
Q ss_conf 57999419811178753234311765633877545331-8724783178887788873104
Q gi|254780991|r 293 MIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFR-VCGDSIEIFPSHLEDVAWRVSM 352 (805)
Q Consensus 293 lIIvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~-~rg~ILdsatps~Es~~~Rie~ 352 (805)
T Consensus 177 ~lVlDEADrml----------d~gf~~-~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 177 TLVLDEADRML----------DMGFID-DIEKILKALPPDRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred EEEECCHHHHC----------CCCCHH-HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 89967617663----------887689-999999738977489999824898999999997