HHsearch alignment for GI: 254780991 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1617.01 Aligned_cols=661 Identities=63% Similarity=0.986 Sum_probs=644.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 77547751888888438999999998873973379986337646999999999719978999316346899999999867
Q gi|254780991|r 138 ITFFQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFF 217 (805)
Q Consensus 138 ~~~f~l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~F 217 (805)
T Consensus 2 ~~~F~l~s~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fF 81 (663)
T COG0556 2 MKPFKLHSPFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFF 81 (663)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 97516606889999867999999988863860258862036883107999999868971998255547999999999768
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEE
Q ss_conf 89838998621344442101555432102210358899999999999985499849982778961689834772257999
Q gi|254780991|r 218 PHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQL 297 (805)
Q Consensus 218 p~n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvd 297 (805)
T Consensus 82 P~NaVEYFVSYYDYYQPEAYvp~tDtyIEKdasiNdeId~mR~SAt~sLleR~DVIVVaSVScIYGlG~P~~y~~~~~~l 161 (663)
T COG0556 82 PENAVEYFVSYYDYYQPEAYVPSTDTYIEKDASINDEIDRLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMMLSL 161 (663)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHEEEE
T ss_conf 67645888640014685134577773575365067899999999888775047869999876510489869987537998
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCC
Q ss_conf 41981117875323431176563387754533187247831788877888731044420022210166640011100001
Q gi|254780991|r 298 KIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETI 377 (805)
Q Consensus 298 Eehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~ 377 (805)
T Consensus 162 ~vG~~i~~~~ll~~Lv~~qY~Rnd~~f~rG~FRvrGDvveIfPa~~~~~~~RieffgDEie~i~~~dpltg~~~~~~~~~ 241 (663)
T COG0556 162 EVGQEIDRRELLRKLVDLQYERNDVDFQRGTFRVRGDVVEIFPAYYDDEAIRIEFFGDEIERISEFDPLTGQVIGELDRF 241 (663)
T ss_pred ECCCCCCHHHHHHHHHHHCEEECCCCCCCCCEEEECCEEEECCCCCCCEEEEEEECCCHHHEEEEECCCCCCCCCCCCCE
T ss_conf 35773489999999997261114555466715851767997216667605999972753033534445668521345518
Q ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 00000000256367887545589989989988754433211001244447777533211201451011333114465556
Q gi|254780991|r 378 KIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGEP 457 (805)
Q Consensus 378 ~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge~ 457 (805)
T Consensus 242 ~iypashyvt~~~~~~~Ai~~Ik~EL~eRl~~~~~~~kllEaqRL~qRT~~DlEMl~e~G~C~GIENYSRhl~gr~~Ge~ 321 (663)
T COG0556 242 TIYPASHYVTPRERLEQAIESIKEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCSGIENYSRHLTGRKPGEP 321 (663)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
T ss_conf 98056331478889999999999999999999987795378888887777539999982877661333565058999957
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 20233026544213210123447544543245654133323576655444322211101001215554544468675420
Q gi|254780991|r 458 PPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWEL 537 (805)
Q Consensus 458 P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~ 537 (805)
T Consensus 322 P~tL~DYfp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~~E~ 401 (663)
T COG0556 322 PYTLFDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYEL 401 (663)
T ss_pred CCCHHHHCCCCEEEEEECCCCCHHHHHCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 98478858841389982444650765320133378888898715768611137997779999745977999789974877
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 13220023432012446772000013310168899999986302321246621478999999998635966873257645
Q gi|254780991|r 538 EQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVK 617 (805)
Q Consensus 538 e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~ 617 (805)
T Consensus 402 e~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdid 481 (663)
T COG0556 402 EQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDID 481 (663)
T ss_pred HHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 74558426887247788898526514877478999999999964972999843688899999999866964786424403
Q ss_pred HHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 78999999997318986999845875357877711799962885674446013776654312799866999824898899
Q gi|254780991|r 618 TLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNSKVILYADTITKSI 697 (805)
Q Consensus 618 ~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~~~G~~il~ad~~t~~~ 697 (805)
T Consensus 482 TlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM 561 (663)
T COG0556 482 TLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 89999999997577874898501331347886455798860685444345325999987886357973999710114999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999878888888876887188530234667776656665555555543333431279788999999999999999974
Q gi|254780991|r 698 QLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLEDAATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADN 777 (805)
Q Consensus 698 ~~ai~e~~rrr~~q~~~n~~~~i~p~~i~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~m~~aa~~ 777 (805)
T Consensus 562 ~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~~~--~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~ 639 (663)
T COG0556 562 QKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYK--AKIEKKASKMSKKELEKLIKKLEKEMKEAAKN 639 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988889999999999669997122011566642011012333--20122223489899999999999999999984
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 14899999999999999997332
Q gi|254780991|r 778 LNFEEAARIRDEIKRLKSSPYFQ 800 (805)
Q Consensus 778 l~fE~Aa~lRD~i~~l~~~~~~~ 800 (805)
T Consensus 640 l~FE~Aa~lRD~i~~L~~~~~~~ 662 (663)
T COG0556 640 LEFEEAARLRDEIKELKEELLGK 662 (663)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78888999999999999876035