HHsearch alignment for GI: 254780991 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.88 E-value=1e-19 Score=166.30 Aligned_cols=345 Identities=20% Similarity=0.226 Sum_probs=203.1
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 1888888438999999998873973379986337646999999999719978999316346899999999867898-389
Q gi|254780991|r 145 TDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN-AVE 223 (805)
Q Consensus 145 ~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n-~V~ 223 (805)
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g 111 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIG 111 (442)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5788859999999999962225-786799967999889999999998269889997829999999999997348867660
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCC-CEEEECCHHHHCCC--CCHH--HHHCCEEEEE
Q ss_conf 98621344442101555432102210358899999999999985499-84998277896168--9834--7722579994
Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERN-DCIVVSSVSCIYGI--GSVE--SYSQMIVQLK 298 (805)
Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~-~~IVVgsrSAIfgl--~~P~--~~lglIIvdE 298 (805)
T Consensus 112 ~~~~~------------------------------~-------~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE 154 (442)
T COG1061 112 IYGGG------------------------------E-------KELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDE 154 (442)
T ss_pred EECCC------------------------------C-------CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 33687------------------------------2-------3357774899983897641555540356667599975
Q ss_pred CCCCCCHHH--HHHHHHHCCCCCCHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCC
Q ss_conf 198111787--532343117656338775453318724783-17888778887310444200222101666400111000
Q gi|254780991|r 299 IGDSVEQKE--LLSSLVKQQYKRQDIGIIRGTFRVCGDSIE-IFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVE 375 (805)
Q Consensus 299 ehd~~~~~~--~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILd-satps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~ 375 (805)
T Consensus 155 ~Hh~~a~~~~~~~~~~~~~~~-----------------~LGLTATp~R~D-~~~~~~l~~~~g~~vy----~~~~~~li~ 212 (442)
T COG1061 155 VHHLPAPSYRRILELLSAAYP-----------------RLGLTATPERED-GGRIGDLFDLIGPIVY----EVSLKELID 212 (442)
T ss_pred CCCCCCHHHHHHHHHHHCCCE-----------------EEEEECCCCCCC-CCCHHHHHHHCCCEEE----ECCHHHHHH
T ss_conf 245784779999997510310-----------------467714872448-7752487740575567----335899833
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC
Q ss_conf 01000000002563678875455899899899887544332110012444477775332112014510113331144655
Q gi|254780991|r 376 TIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPG 455 (805)
Q Consensus 376 ~~~i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~g 455 (805)
T Consensus 213 ~g~Lap~~~~~i~~~~t~~~~~~~----------~~------~~~~~~-------~~~~~~~~----------------- 252 (442)
T COG1061 213 EGYLAPYKYVEIKVTLTEDEEREY----------AK------ESARFR-------ELLRARGT----------------- 252 (442)
T ss_pred CCCCCCEEEEEEEECCCHHHHHHC----------CH------HHHHHH-------HHHHHHCC-----------------
T ss_conf 787577499998623662877740----------31------555555-------55543100-----------------
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 56202330265442132101234475445432456541333235766554443222111010012155545444686754
Q gi|254780991|r 456 EPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSW 535 (805)
Q Consensus 456 e~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~ 535 (805)
T Consensus 253 ------------------------------~~~~--------------------------------------------~~ 258 (442)
T COG1061 253 ------------------------------LRAE--------------------------------------------NE 258 (442)
T ss_pred ------------------------------HHHH--------------------------------------------HH
T ss_conf ------------------------------1345--------------------------------------------67
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 20132200234320124467720000133101688999999863023212466214789999999986359668732576
Q gi|254780991|r 536 ELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSE 615 (805)
Q Consensus 536 e~e~~~~~~~eqi~rptg~idp~ieir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~ 615 (805)
T Consensus 259 ~~~~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~ 315 (442)
T COG1061 259 ARRI---------------------AIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGE 315 (442)
T ss_pred HHHH---------------------HHHHHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHCCCCC-EEEEECC
T ss_conf 7777---------------------6642899999999987532-688669997577999999998626774-2466578
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-C-CCE--EEEEEC
Q ss_conf 457899999999731898699984587535787771179996288567444601377665431279-9-866--999824
Q gi|254780991|r 616 VKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARN-V-NSK--VILYAD 691 (805)
Q Consensus 616 ~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR~-~-~G~--~il~ad 691 (805)
T Consensus 316 t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-----t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~ 390 (442)
T COG1061 316 TPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-----TGSRRLFIQRLGRGLRPAEGKEDTLALDYSL 390 (442)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECC-----CCCHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 99889999999987089529999614126657888757999779-----9879999999616634788999659999964